RNA id: XM_022684086.1


Basic Information

Item Value
RNA id XM_022684086.1
length 6612
RNA type mRNA
GC content 0.47
exon number 38
gene id atp8a1
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39643544 ~ 39795943 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACTTGTGAAGCGGCACTGGTTTCCCACTGTTCCGTTTCGAGCTCTTTATCGGTTCTTGCGCGCGAGCGCTCGCGTTTTCGGCCGAAAAACGGCGTCCGCGGGGAAACCGGCGAGTGGAAGAGGACTAACGCTGTTCGTTCACAAACAATGAACACTTGTCAGAAATAAGCGGCTGCCTGAACGTCGGCGGACGACGACCCGCACTGAAATTCCTGGAcaggagagacggagagagagagaggagggagaggcGAGAGCTGCGGCTGACAGGTGCCGTTACTCGGCTCGGTTCAAATTGAGCCAAGATGCCGCCGGTCCAGAGAACCGTTTCAGACCTCCGCTCCCGCGCTGAAGCTTTCCCACCTCAGAggtatGAAAAGACAGAAGATGCATCAGAGAAGACCTCCCTAGCTGATCAGGAGGATGCTCGCCTAATATTCATCAATCAGCCCCAATTTACCAAATTCTGCAGCAATCGTGTCAGCACAGCAAAGTACAACGTGCTGACCTTCCTGCCACGGTTCCTGTACTCTCAGTTCAGAAGAGCAGCCAACTCCTTCTTCCTGTTCATTGCCCTGCTGCAGCAAATTCCAGATGTCTCTCCAACTGGGCGATGGACCACGCTTGTGCCCCTGCTCTTCATCCTTGTGGTGGCGGCAGTGAAGGAGGTGATAGAGGACCTGaaacgtCACAAAGCTGACAGTGTTGTCAACAAGAAAGAGACGCAAGTGCTGAGGAATGGAGCCTGGGAGATAGTTCACTGGGAGAAGGTGGCAGTAGGGGAGGTAGTCCGAGCCTCCAACGGAGATCACCTCCCGGCCGACCTCATCATATTGTCCTCCAGTGAACCTCAGGGAATGTGCTACATAGAAACCTCAAACCTGGATGGagaaacaaatttaaaaatcaGACAAGGTCTGCAGATCACTTCTGAGATAAAAGACATTGACAGCTTGATGCGTCTGTCTGGCCGTATGGAATGTGAGAGTCCCAACAGACACCTGTATGAGTTTGTGGGCAATATCCGAATGGATGGACACAGCACAGTACCACTGGGTCCAGATCAGATCCTACTGAGAGGAGCACAGCTGAGGAACACACAGTGGGTGCATGGCATTGTGGTCTACACAGGACACGACACTAAGCTCATGCAGAACTCCACACGGCCTCCTCTGAAGCTGTCCAACGTGGAGCGCATCACTAACTTTCAGATCCTGGTGCTCTTCGGCTGCCTGCTGGCCATCTCTTTGGTGTGCTCCATCGGTCAGACCATCTGGAAGTACCAGTACGGCAATGATGCCTGGTACATGGACCTCAACTACGGTGGAGCGGCCAACTTCGGCCTGAACTTCCTCACCTTCATCATCCTCTTCAACAACTTGATTCCCATCAGTCTGCTGGTGACGCTGGAGGTGATCAAGTTCATCCAGGCTTACTTCATCAACTGGGACACTGACATGATCTATGAAGCTACCAACACTCCAGCCATGGCTCGAACCTCCAACCTGAATGAAGAGCTGGGCCAGGTCAAATACATCTTTTCAGACAAAACAGGAACTTTGACCTGCAATGTGATGCAGTTTAAGAAGTGCACTGTAGCCGGCGTGGCCTACGGTCACACATGCGAAGTGGAGGATGGTAGTTTTGCAGAAGAGGACGGTCACAGCTCTCACTCGATGGAGGAGGCAGGATTTAATGACCCCAGCCTACTGGAAAACCTCCAAAGCAATCATCCCACCGCCCCAGTGATCATGGACTTTATGACCATGATGGCGATCTGTCACACGGCCGTGCCTGAACGCAGCGAGGACACCATCACCTATCAGGCTGCTTCTCCAGATGAAGGTGCTCTGGTCCGTGCAGCCCAGAACCTGGGCTTTGTTTTCTCGGCCAGGACCCCGGACAGCGTCATTGTGGAGTCTcttGGTGAAGAGGAGAAATATGAACTGCTGCATGTCCTGGAGTTCACCAGTGCCAGGAAGAGGATGTCAGTCATCATGCGGACTCCATCCGGAAAGATCCGCCTCTACTGCAAAGGAGCCGACACTGTGATCTACGACCGCCTGGCAGACAATTCCAGATACAAGGATATCACACTCAAACATCTGGAGCAGTTTGCTACGGAGGgttTGCGTACACTGTGCTTTGCGGTAGCGGACATATCAGAGTCATTGTATCAGCAGTGGCTGGAGGTACATCATCGAGCCTGCACCTCTCTACAAAACAGAGCTCTCAAACTGGAGGAGAGTTATGAACTCATTGAGAAGAACCTACAACTCTTGGGAGCCACAGCGATTGAGGACAAGCTGCAGGATCGCGTACCTGAGACCATTGAGACCCTGATGAAAGCAGACATCAAAATCTGGATCCTGACAGGGGACAAACAAGAGACGGCCATCAATATCGGACACTCCTGCAAGCTGCTCACCAAGAACATGGGTCTGCTGGTGATTAATGAGGAGACGCTGGATgGGACAAGAGAGACTCTGAGCCACCACTGCGGCATGCTGGGAGATGCTCTGCATAAGGAGAACGACTTTGCGCTGATCATTGATGGGAAGACGCTGAAGTACGCACTGACCTTTGGAGCACGCCAGTACTTCCTGGACCTGGCATTGTCCTGCAAGGCCGTCATATGTTGCAGggtCTCTCCTCTGCAGAAGTCTGAGGTGGTGGAGATGGTGAAGAAGCAGGTGAAGGTCATCACTCTGGCCATCGGCGATGGAGCCAACGATGTAGGCATGATCCAAACTGCTCACGTGGGTGTTGGCATCTCAGGCAACGAGGGACTGCAGGCTGCCAACTCTTCAGACTACTCTATTGCACAGTTCAAGTATTTAAAGAACCTCCTGCTGGTCCATGGAGCCTGGAACTATAACCGTGTCGCTAAATGCATCCTCTACTGCTTCTACAAGAACATTGTGTTGTACATCATTGAGATTTGGTTTGCCTTTGTGAACGGCTTCTCTGGTCAGATCCTGTTTGAGCGCTGGTGTATCGGCCTGTATAACgtgATCTTTACAGCTCTACCCCCGCTGACACTGGGCATTTTTGAACGCTCCTGCAGGaaagaaaacatgttaaaataccCAGAACTGTACAAAACCTCCCAGAATGCCATGGGGTTCAACACAAAGGTTTTTTGGGCTCATTGTCTGAACGGACTCTTTCACTCAGTCATCCTCTTCTGGTTCCCCCTGAAAGCCTTCCAGCATGACACGGTCTTTGGAAACGGAAAGACTCCAGACTATCTACTGCTGGGGAACATGGTGTACACATTCGTAGTGATCACTGTGTGTCTGAAGGCAGGGTTGGAGACTTCTTCCTGGACCATGTTCAGTCATATAGCCATCTGGGGCAGCATTGGATTGTGGGTAGTGTTCTTTGGCATCTATTCCTCTCTATGGCCTCTCATCCCTCTGGCTCCGGATATGTCAGGAGAGgCGGATATGATGTTCAACTCTGGAGTGTTCTGGATGGGGCTATTCTTCATTCCTGTCACCTCTCTGGTGTTTGACGTGGCCTACAAAGTCATTAAGAAGGCTTGCTTTAAGACACTGGTGGATGAGGTCCAGGAACTGGAGGCTCTGTCTAAGGATCCTGGAGCTGTGGTTCATGGAAAGAGTTTGACAGAGAGGGCCCAGCTGCTGAAGAACGTGTTCAAGAAGAGCACAGTCAGCCTGTACCGCTCCGACTCCATGCAGCAGAATCTACTCCACGGCTACGCCTTCTCCCAGGATGAGAACGGAGTGGTCTCCCAATCGGAGGTCATCAGGGCCTACGACACCACCAAGCAGCGGACCAATGAGTGGTGAGATCCGGCCTCCCCCCAGGCCCGGTCCCCCTGAGCCTCAGCAATCTCAGTCAGTCTACCTTTTGAAACTGGCAAAAGCTGAAGTCTGTCAGTTTGTCTTTCTCCAGCTCAGAGTTGCCTGGCTGGAACTACagcaaagaaacaaaagagagagaaaagtagagagagcTTTACTTCGAAAGGGAAACAAAAAAGTAAGGAACAGTAATTAGGATTTGAAGATTTGTAGATTTCGAAGCAGTCACACTGGAGCAGTAGTGTCCAGCCTGGGTTTGAGGGGGTTTAGGCTGGACTGCAGTTTTTGCCCGGCTCTGTTATCAACCCTATAAAACAGAGGGACACTGAGAAGCAGTACTATGAATTCTTTCTCCTCTGACATCCTTCAAACTTTTACTGTTAAAGCCAAAAAtacagtggtggtggtggtggtggtggtaatgGTGATGGTAATAATGATGTAGACCCTTTGTGGTTGTGGTCTTTGATTGTGTCCCCCCTAATCAGTGATTGTGTATGAAACTCTCTGAATAATAGTATTGCTCAGTAATCCCTGATTGTGTAGCAACAGCAGTACTGAAGATCTTGTGGAAACGGAATTCGCCAAAGAACACCGTAAGGAACACAATCACTGTTAAAAAGGAAATGTTGAAGACGTGTTTAGAAATGTCAGTATTAAGCAGATGTATTACATTTTTCCTAAAGAATCTCCCCTCTGCACTGATTTGGCCACTGCAGACCTTAAAACTACagatttgtgttttgtttatgatgtttgttgctgtttctttgtatttattttctcttttttatttttttgtttttttttttctttgcatgcTCTTAATTTCTTTTCCTGCCTTCAGATactggttttaatttaatttattattttttaaattgttaaatagtTAGTTGTTTATTGTGCCTGATTTTTTTTAGGCCATTGGGTTCGTGCCATTTGTAAGACATGTGTATATCTTTTGATAGCCCTTCAACCAGTTTCTGCATTCCTCATCATACACCGCTGCAACGATCACAATGGTGCCTAATaggaacttttttttcttttcttcccagTTAGAGAGTGTACATCAGATATTTTAGCTAGGCAGGATTAGTCCGCTAACACACAAGGAGTTACAAGCTGTCGTCGTCTCTGCAGTGCCTGGCTGCTTCGTTTGAGCTCTGTGTGGACTCTCTGTTGTGGCAGCCAGTTCTGTTTGCTTTGTTAGGAAGTCTTTTAGATGTTGCAGATGGTTGGCTTCTAGTAATTCTCTtagagaaagatagacagagTTGATCCCTCAAAACTGAAGTGCCATTAGCTTGGGGGAGGAAGAGAAGGGGTTAGCCTGGAGGTCCACCCAGTATCAAAATGACTTTGTCTCCATAGTTATTTTgtgaatttgtatttttatattggacAAGTACAACTTTTTGGATTGATCTGCTTTGTATATGAGACGTTGTGTCGTTCTTCTTATTTTGTCGTCTATCTTCAGAAAGTTGATGGTGGAGAATGAGCCTCAATCTTAACCCGTGACTAAAAAACACTCGTCTTGTTGACTAAATGAAggcttatttaatttattgtctagtatttttttgtttttcttttttttgtgcgcTGGTTCTCTTCTCCCTGTGGGAGAGCAGGTTTTTGTACGttgtgtgtgcattgtgtgtgttgtctgcATGTGCATGTGATGAGTGTATGCTGGACtggatgtgagagtgtgagtgtgtgtgaatgtgtcttaagtgtgtgtacctgttctgtagcatgtgtgtgtgttaacttgCCCACTGGGTGACTAACTGCTATTTCCTCAGGCGGACTTCTGGAATCCTTTGTGTGTGGGACTGAAgaatggatgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgagatccccatgtctttgtctttgtggGTGTAATGCTGCTCGCTCCTCGTCTGCATGACTCCAGGTTATAATCACAGTGAGCTATGATGCTGCATGGCCCTGTACATGTAGAGAGTGTTTGTGCTGGAGTGTGggagtgtgaaagtgtgtttgtgtgtgtgtgtgcgtgtctgtagTCCTTCAGCCTGTACTGGGCAGAAGAGTCTTGTTGGTAACACTGAGCTAAAGCTTGACAGATAACGTTGCACATTGCACTGTTAATCTCTCCAGTGGTGGCGTGTCTTTCTGAACTGGATTGTTTGTTTCCAGTATTATTTATCTACTGGTACACTTGTGTTAAAATCTCATACGGTGTACCTCGGCTCGCAACAGGAATCACcacgtttttctttttctgttgtttttatttctcagcTTGTGTAAAGTACAACATCAGTGCATCTGTCTCTAACCTCTGCTTTCAGTGGGTTGTTTCTGTTCTGAATGTTCGCTGTCGTTGGTTGTTGTCGGCTCTTGCTGAATTGAACTCTGGATGTTATTTTCTGACGTGCCGCAGTGAAAGAGTTGGACCGTTGCTTTAGCGAACTGTCGTCTGTGGAAGTGGTTGACTGCATGAATGGTTTAAATGTTAGTCGTACATGGATTTTTCTTTAGTACCGGACACTTTAAAGAAgaaattgcactttttttaatttgtgttaacttttttctttgttcttctTTTCTGTCTTCATCGTTTAATGATTGTTCAGCATGTTGGGACTGCAAAATTTTAAGTGTTCTGTCTTTTACTGCCATAAAGGactactgaaataaactttACAACTTGAAGATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286074 lncRNA downstream 139138 39503698 ~ 39504406 (-) True G210772
TU286062 lncRNA downstream 142611 39497739 ~ 39500933 (-) True G210764
TU286044 lncRNA downstream 168190 39471582 ~ 39475354 (-) True G210752
TU286061 lncRNA downstream 174265 39463107 ~ 39469279 (-) False G210764
TU286035 lncRNA downstream 174681 39447499 ~ 39468863 (-) False G210749
TU286124 lncRNA upstream 17399 39813339 ~ 39813564 (-) True G210799
TU286125 lncRNA upstream 20684 39816624 ~ 39819903 (-) True G210800
TU286127 lncRNA upstream 20684 39816624 ~ 39819903 (-) False G210800
TU286132 lncRNA upstream 20684 39816624 ~ 39819903 (-) False G210800
TU286136 lncRNA upstream 20684 39816624 ~ 39819903 (-) False G210800
XM_007246368.3 mRNA downstream 11368 39613715 ~ 39632176 (-) False bend4
XM_007246367.3 mRNA downstream 11368 39613715 ~ 39632176 (-) True bend4
XM_007246369.3 mRNA downstream 11369 39613715 ~ 39632175 (-) False bend4
XM_007246366.3 mRNA downstream 30898 39596437 ~ 39612646 (-) False LOC103033813
XM_007246365.3 mRNA downstream 30900 39596437 ~ 39612644 (-) True LOC103033813
XM_007234338.3 mRNA upstream 29373 39825313 ~ 39835771 (-) False slc30a9
XM_007234337.3 mRNA upstream 29373 39825313 ~ 39835770 (-) True slc30a9
XM_022684088.1 mRNA upstream 29373 39825313 ~ 39835406 (-) False slc30a9
XM_022684090.1 mRNA upstream 40357 39836297 ~ 39842575 (-) True LOC103030807
XM_022684089.1 mRNA upstream 40357 39836297 ~ 39841635 (-) False LOC103030807
TU286109 other downstream 22044 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 102728 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 2932801 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 4893338 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 5006245 34629587 ~ 34637299 (-) False egf
TU286210 other upstream 137198 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 565318 40361258 ~ 40363237 (-) True G210991
TU286454 other upstream 576865 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 766923 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 1511006 41306946 ~ 41310735 (-) True LOC103037199

Expression Profile