RNA id: XM_007238079.3


Basic Information

Item Value
RNA id XM_007238079.3
length 1962
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC103042952
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40302159 ~ 40307383 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCACAAGTATATTATACCGTGGTGAACTGCTTGGCTCTATGCGGTTTTCTAGTGTATTCTGCTCCGCTCCAGAGGAACCACTCGGAAATTACATGAGCGGAAGGGATTTTCGAAGAAGAAAACAGTTGAATGGCGGTTCTCCTCCTCTGTTCCAGGAGTGAGTTTTTTTAAAGCCGGTTTTTTGGACAGATGAGCCCGTCTACACAcgAAATGCTATAGTTTAACCTGGATCACATAAAGAGCAGAAGATATGGATGATACCACACTGGAAGAGCCGAGGCCTGATGGCAGTCcttttccagagctggatgATCCTGAAGCAGCTGAATCTCTCAATAACGCCTGCCTGCTGGATGACAGCGACCTGCCGTTTAATGATCTGGGTGCCTCTCATGATTTTTCTCATTTACTTATTCCTGAAACTCCTGAAATTCCTGAAAGCCCTGTTTTGTTTAGAAGAAAACGGCAGTCCCAGGTATCTGATAATCACAGTGAGGCTTTGATGTGTGCTTCAAATGCCAGAAGATCAGACAGATGGGACATGATGCCTGGATACCTCCACAAAACTCCAAACTCTCAGAGAACACTGAAGCGTCGGCGGCTCCACGGCACAGAAGGGAGCAGTCAAGAATCACAAGGAAGAACAGGAGGAAATGGATTTGTACCTGCTTCGTCTCTTTTAAGTTCAAACTGCTTTTGGCTGGAGTCCCCATGTCCGCCACCATCCTCCTTTTCTTGCTCTGCCACTTTATCTGCCTCGTCCTCTGCTGGAGCTCCTGAACACTTAATGCTGGAAactgcttcttctgctgctggtgGTCTAAATGGTTTTAATGAGATGTCTTCTTTTGATCATACCTCCACTGATCAAAAAAAGTGTAGTAGTAAAGAACAGAAATCTAGaaggaaaaacacaagaaatggTTCAAGGACCACTAGAACTGCAACAGCTGCACCTTTGTATAGACCTGAAGAACAACACTTGCTAGATGTGCTTAACACGGatacagagagaagtGAAGCTGTGAATCCTTCAGCATGTCAAATACAGGAGGAGATTGTTATCAtagatgaggatgaggaggatgatGTGGTTGTTGAGGCAATGGTTCGCTCCATTCAGATGGCTGAAGATGAGGCATTTGCCAGAAGCCTTCAGGATCAGTTTGACAGAGAGGAGCAGATACAGCAGGACCATAGAAGACAGCAGACAGCTCAACCTACCAGGCACACCCATAACAACCCGTTTGACTCTTATGTAGGTTTAGACTGGATCTCTCCATGGGCCTCCATGGTAAACTCTCCATCATTCAGAAGCCTGGGGTTGACTGAGCTGCAGCAGGCCATGTTTGAAGGGCAAGCTGGTGGCCAAGTGAGACAACCTCGGACTCGACGCACTCGCAACACTCGCCGCAGACAGCCTGTGCCTGTGGACCTGTTTGATGACAGTCAGGGAAATAACTATGAGGCCCTTCTAGCCTTTGAGGAAAACCAGGGAAGTGCAGTGGCCAAGAACAATCTTAGTAAAGGTGACATAGAGAGACTCCCTACAAAAGtgtatgaccctgcacatagTGCTGGGAAAACAGAGTGTCAGATCTGTTTCTGTGATTACAAACAGGGGGAGAAATTGCGAATTCTTCCATGTCTTCATGACTACCATGTGAAGTGCATAGATCGCTGGTTAAAAgaGAATTCCACCTGTCCTATATGCAGGGCGGATGTATCAGAGTGTGGTGGCTTTTCATGATGCACAGGGTTTAATGTTtgacttttgtttttaaaaatgcccAACACAATGCGAAGGATGGACCAGCATAAACactgtatgttttaaatgttctgaCAAACGATTTAAGTTTACAAAAGTATTCTGTTGTACATTTTAGTAAGAAATTAACATTCACTGTTCAACTACtacaatttttacttttttatataataaattacattttatgga

Function

GO: NA

KEGG:

id description
K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286401 lncRNA downstream 138609 40163333 ~ 40163550 (-) True G210959
TU286387 lncRNA downstream 163851 40137876 ~ 40138308 (-) True G210949
TU286374 lncRNA downstream 193236 40106604 ~ 40108923 (-) True G210937
TU286362 lncRNA downstream 227391 40072385 ~ 40074768 (-) True G210934
TU286234 lncRNA downstream 246941 40054723 ~ 40055218 (-) True G210868
TU286452 lncRNA upstream 64146 40371529 ~ 40372033 (-) True G210994
TU286461 lncRNA upstream 144859 40452242 ~ 40452572 (-) True G211001
TU286488 lncRNA upstream 191911 40499294 ~ 40500630 (-) True G211025
TU286489 lncRNA upstream 193816 40501199 ~ 40504302 (-) True G211026
TU286494 lncRNA upstream 204253 40511636 ~ 40512067 (-) True G211029
XM_022684132.1 mRNA downstream 52617 40246606 ~ 40249542 (-) True c24h15orf40
NM_001291260.1 mRNA downstream 71850 40228839 ~ 40230309 (-) True cartpt
XM_022684094.1 mRNA downstream 81425 40165500 ~ 40220734 (-) False LOC103046604
XM_022684131.1 mRNA upstream 1111 40308494 ~ 40312741 (-) True LOC103043462
XM_022684130.1 mRNA upstream 1111 40308494 ~ 40312510 (-) False LOC103043462
XM_007238081.3 mRNA upstream 1111 40308494 ~ 40312480 (-) False LOC103043462
XM_022684129.1 mRNA upstream 1111 40308494 ~ 40312049 (-) False LOC103043462
XM_007238082.3 mRNA upstream 5501 40312884 ~ 40317812 (-) True actr6
TU286210 other downstream 362112 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 506218 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 680659 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 761343 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 3591416 36710420 ~ 36710743 (-) True G210059
TU286446 other upstream 53875 40361258 ~ 40363237 (-) True G210991
TU286454 other upstream 65422 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 255480 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 999563 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1897753 42205136 ~ 42205636 (-) True G211539

Expression Profile