RNA id: XM_007238082.3


Basic Information

Item Value
RNA id XM_007238082.3
length 1724
RNA type mRNA
GC content 0.40
exon number 11
gene id actr6
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40312884 ~ 40317812 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTAGCATCATACTGTAAGGCACATACACATTTGAAGGAAATGTGCTCTTGAATGTAAAGGCGATTTTTTAAATCCACttcactaaatataaaaaaatgcaaatatttagAATGTATGTTTATAATAAGCATGAAGACAATATCTTTACATGTCCGGTGCAGCAGGGGGCAGTAGCCGCAGTTATGCTGCTGATATAATGTTGGACTGGAGAAGAACAAGAGCTGAATACAGTTAAACTGCGTAAAGGCGCAGAAGCGCAGTCTCAGTTCCCACTGCAGAGAATGGAGTTTATTTAAGGAGTTTAATTCCATTAAAACACGCCTTGAATACTTTAACCCTGAATAACAGCTGCTGAAAATGACAACCCTCGTCCTGGATAACGGAGCTTACACAGCTAAGATCGGATACAGCCATGAGAAAGTCAGTGTTCTTCCTAATTGCCAATTTCGCTCCAAAACTCTGAGGCTAAAAACCTACACTGCCAATCAGCTGGATGAAATCAAGGATCCATCTGGCCTCTTCTATATTCTACCATTTCAGAAGGGTTATCTTGTTAACTGGGATGTGCAGCGTAAAGTGTGGGATCATCTGTTCggaaaagaaatgtttaagGTTGATTTTGCTGACACCAGCATAGTGATAACAGAGCCCTACTTCAACTTCACCTCAATTCAAGAGTCAATGAATGAGATTTTGTTTGAAGAGTACCAGTTTCAAGCAGCATTAAGAATCAATGCTGGATCTCTGAGTGGCCACAGATACTTCCAAGAGAACAATTCAGAGTTGTGCTGCATTGTGGTGGATAGTGGCTTTTCCTTCACACACATCATCCCTTACTGTAGAGGAAGGAAGATGAAGGATGGCATTTGCAGGATCAATGTAGGTGGAAAACTTCTCACCAACCACTTGAAAGAGATAATTTCTTACAGGCAGCTTCACGTAATGGATGAGACACATGTGATTAACCAAGTAAAGGAGGATGTGTGCTATGTATCTCAGGACTTCTACAAAGACATGGAGATCGCTCAGCTAAAAGGAGAAGAAAACATGGTGATGAAGGACTATGTACTACCAGATTTCAGTTCCATCAAAAAGGGCTTCTGTAAGCCTCGAGAGGAAATGAATTTCACAGGAAAGTATAAGACAGGGGAGCAGATCTTGAGGCTTACCAATGAGAGATTTGCAGTCCCAGAGATGCTCTTCCATCCTGCAGACATTGGAATCCAGGAGATGGGCATTCCAGAGGCTTTAGTCAACTCTATCAACAAAATGCCTGAAGAAATGCAGCCCCACTTCTACAATAATATTGTCTTGACAGGTGGTAACACCTTATTCCCTGGCTTTAGAGACCGGGTATACAAGGAAGTCCGTGCCCTCGCTCCTACAGAATTTGAGGTTTCTGTAGTACAGCCACAGAAtccAATCTGCTATGCATGGGAGGGAGGAAAGCTTTTAGCAGAAAATCCAGACTTTGAAGAGATGGTTGTCACACGAGACGATTATGAAGAGAATGGACATTTTATATGCGAGGAAAAGTTTGACATTTGACCTTCAAATAACTGCAGTAATATTACTCTGTTTAATGTTTCTTCTGACATCTTTTGTGGCAGAAATTATGGTGTACTGCAACTATGAATCTGATAGTTGTTAAATTTGTAAGGTGTTTTGTATTGTGCTCAATGCCTAAAATATGTGaggaaataaatatgttttcatatgttt

Function

GO: NA

KEGG:

id description
K11662 ACTR6, ARP6; actin-related protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286401 lncRNA downstream 149334 40163333 ~ 40163550 (-) True G210959
TU286387 lncRNA downstream 174576 40137876 ~ 40138308 (-) True G210949
TU286374 lncRNA downstream 203961 40106604 ~ 40108923 (-) True G210937
TU286362 lncRNA downstream 238116 40072385 ~ 40074768 (-) True G210934
TU286234 lncRNA downstream 257666 40054723 ~ 40055218 (-) True G210868
TU286452 lncRNA upstream 53717 40371529 ~ 40372033 (-) True G210994
TU286461 lncRNA upstream 134430 40452242 ~ 40452572 (-) True G211001
TU286488 lncRNA upstream 181482 40499294 ~ 40500630 (-) True G211025
TU286489 lncRNA upstream 183387 40501199 ~ 40504302 (-) True G211026
TU286494 lncRNA upstream 193824 40511636 ~ 40512067 (-) True G211029
XM_022684131.1 mRNA downstream 143 40308494 ~ 40312741 (-) True LOC103043462
XM_022684130.1 mRNA downstream 374 40308494 ~ 40312510 (-) False LOC103043462
XM_007238081.3 mRNA downstream 404 40308494 ~ 40312480 (-) False LOC103043462
XM_022684129.1 mRNA downstream 835 40308494 ~ 40312049 (-) False LOC103043462
XM_007238079.3 mRNA downstream 5501 40302159 ~ 40307383 (-) True LOC103042952
XM_007238084.3 mRNA upstream 977 40318789 ~ 40325440 (-) True gtse1
XM_007238085.3 mRNA upstream 10027 40327839 ~ 40355274 (-) True LOC103045095
XM_022684118.1 mRNA upstream 10640 40328452 ~ 40355276 (-) False LOC103045095
XM_022684120.1 mRNA upstream 10640 40328452 ~ 40355276 (-) False LOC103045095
XM_022684119.1 mRNA upstream 10640 40328452 ~ 40355276 (-) False LOC103045095
TU286210 other downstream 372837 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 516943 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 691384 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 772068 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 3602141 36710420 ~ 36710743 (-) True G210059
TU286446 other upstream 43446 40361258 ~ 40363237 (-) True G210991
TU286454 other upstream 54993 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 245051 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 989134 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1887324 42205136 ~ 42205636 (-) True G211539

Expression Profile