RNA id: XM_007238085.3


Basic Information

Item Value
RNA id XM_007238085.3
length 4718
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC103045095
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40327839 ~ 40355276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAAAATCCCAAAGTCCCGCCTCATTGCGTCAACGCTCGccggtgggggcggggctttccAGATGGAGTTGTAGAGCGCAGATGGGTAAAGTGATGACAAGAGGACAGGAGATAACTATCCGTGGCTAAAAATGTATCTTGAAGTTCATCTCAACAGCCTGGATCTTCAGTGAACAAAGATGAAGAAACGTTTGCAGGTGCACTGGATGGACATAGCTGATTACATGCATCCTGTTTGCCTTTTGGAATGTAGGTTTCTGCTATCCTAAGTAACTAACAGTGTTGGGAAATTCTGGATTTTGCCACTGAAGATTTAGCTTTCCCTGGAGGGAGCCTGTTCTCCGCTGTCGTGTGGTGCACTGCAGAGGAGACATGGCCCGAAACTCTTTCCGTGGGTCCAAATACAAGGCAGATGCCAACCATGATGCCGAGTTTGGCTGCACGCTCAAGGAGCTGCGCTCGCTCATGGAACTCAGGGGGCCAGAAGGATTACAGAGAATCCAGGAGTGTTATGGAGATGTTCAGGGACTTTGCTCCAGGTTAAAATCTTCTTGCACAGAAGGGTTAAGCGGTCATTCTGATGATATTGCAAACAGAAAGGATGTATATGGGAAGAATTTCATACCTCCTAAAAAGCCAAAAACATTCCTGCAGTTAGTTTGGGAAGCACTGCAAGATGTGACTCTAATCATATTGGAAGTTGCAGCCATAATATCTTTAGGCCTTTCCTTCTACAGACCTCCTGATGCAGAAAGAGAAAACTGTGGTAAAGCTGCTGGAGGAGTGGAAGATGAGGGTGAAGCAGAGGCTGGATGGATTGAAGGTGCAGCCATCCTCTTATCTGTCGTATGTGTGGTGCTTGTCACTGCCTTTAATGACTGGAGCAAAGAAAAGCAGTTTCGCGGCTTGCAGAGTCGCATCGAGCAGGAGCAGAAGTTCACAGTGGTTCGAGGAGGCCAGATCATTCAGATTCCTGTAGCAGAGCTGGTGGTTGGAGATATCGCTcaagtaaaatatgGTGACCTCCTTCCTGCTGACGGGGTGCTAATCCAAGGCAACGATCTGAAAATTGACGAGAGCTCTCTCACAGGAGAGTCAGACCATGTCAAAAAAACAATGGACAAAGATCCCATGCTGCTTTCAGGCACCCATGTTATGGAGGGTTCAGGCAAAATGCTGGTCACTGCCGTGGGTGTCAACTCTCAGACTGGAATTATCTTCACCCTCCTCGGGGCTGGAGATGAGGATGGGGACAATGAGGATGAGAAGGAAGAAAAAGATAGGAAGAAAagggagaaggaggagaagaagaaggagaaagaaaggaaaaagaaggagaagaagggcAAGAAAAGCAAAAAGCAGGATGGATCTGACAAAAACAAGAGTAAAGATGGAGGTGGTGTGGACACTGAGCCTCTCAGCAGTGAGGATGGCATTGATGGTGATGTGAAAAAGAAAACCAATCtaccaaagaaagaaaaatctgTACTTCAAGGAAAGCTCACCAAACTTGCCGTACAGATTGGAAAAGCAGGCCTTTTTATGTCAGCCATCACAGTCATTATACTGGTGGTGCTCTTTTTGGTGGACACCTTCTGGGTCCAGGGGCTTCCGTGGATCAAAGACTGCACTCCTGTCTACATCCAGTTCTTTGTCAAGTTCTTCATCATAGGGGTCACTGTGCTGGTTGTTGCTGTGCCTGAGGGATTGCCCCTCGCTGTCACCATCTCACTAGCCTACTCTGTcaaaAAAATGATGAAAGACAACAACCTGGTCAGACACCTGGATGCATGCGAGACAATGGGCAATGCCACTGCCATCTGCTCAGACAAGACTGGCACTTTAACCATGAACAGGATGACAGTGGTACAGGTGTATGTGGGAGACAGACACTACCGAAAGGTTCCTGAACCTGATCTGATTCCAGGCAAGATCATGGACCTGCTGGTCACAGGCATCAGTGTTAACTGTGCATACACCACCAAGATCATGCCTCCTGAGAGGGAAGGTGGTCTGCCCCGTCAGGTGGGGAACAAAACTGAATGTGCCTTGCTGGGGTTTTCCCTTGACTTACGCAAAGACTACCAAATCATCCGCAACGAATACCCTGAAGAGAAGTTCTTCAAAGTATACACTTTTAATTCTGTGAGGAAATCCATGAGCACAGTGCTGAGAAACTACGATGGAAGCTACCGGATGTTCAGCAAAGGAGCCTCTGAAATTCTCTTGAAGAAGTGCTGTAAAATATTGACTGCAAACGGAGAACCCATATACTTTAAACCCAGAGATCGAGATGACTTGATGAAGATGGTAATTGAGCCCATGGCTTCAGAGGGCCTGAGGACCATCTGCCTGGCTTACAGGGACTTCCCCGTATCGGAGGGTGAACCAGACTGGGACAACGAAACAGACATCCTTACAGGTCTTACCTGCATTTGTGTGGTGGGCATCGAAGACCCTGTACGGCCAGAGGTTCCTGATGCTATTAGGAAGTGTCAGAGAGCAGGCATCACTGTCCGCATGGTCACTGGGGACAACATTAACACGGCTCGCGCTATTGCCACCAAGTGCGGCATCCTCCATCCTGGAGATGATTTCCTGTGCCTTGAAGGCAAAGAGTTTAATAGGCGGATACGCAACGAATTGGGAGAGATTGAACAAGAGCGCATTGACCGAATTTGGCCTAAACTCCGTGTCCTGGCAAGATCTTCTCCAACTGACAAGCACACTTTAGTAAAAGGTATAATCGACAGCACTGTTGTAGAACAAAGACAAGTAGTTGCTGTAACAGGAGATGGAACAAATGACGGTCCTGCCCTGAAGAAAGCTGATGTTGGCTTTGCAATGGGTATTGCTGGAACCGATGTGGCCAAAGAGGCCTCAGATATCATCCTGACCGATGACAACTTCTCCAGCATTGTGAAAGCTGTGATGTGGGGGCGTAACGTGTATGACAGCATCTCCAAGTTCCTGCAGTTTCAGCTGACAGTCAACGTGGTGGCAGTGATTGTGGCATTCACGGGAGCTTGCATCACGCAgGACTCTCCACTGAAAGCAGTTCAGATGCTGTGGGTGAATTTGATTATGGACACGTTTGCCTCGTTGGCTCTGGCCACTGAGCCCCCAACCGAATCCCTACTGCTGAGAAAACCGTACGGCCGCAACAAACCTCTCATCTCCAGAACCATGATGAAGAACATTCTGGGTCATGCCATCTACCAGCTCACCATCATCTTTACTCTGCTGTTTGCTGGTGAGCAAATCTTTGATATTGACAGTGGCAGGAATGCTCCTTTACATGCGCCTCCTTCAGAACACTACACCATCGTTTTCAACACCTTCGTCATGATGCAGCTCTTCAATGAAATCAATGCTCGCAAAATTCATGGCGAGAGAAATGTCTTTGATGGCATCTTTAACAACCTCATCTTCTGTTCCATTGTGTTTGGCACATTTCTTATTCAGATTGTGATTGTGCAGTTTGGAGGGAAGCCCTTTAGCTGTGTAGGCCTCAGTATTGAACAGTGGCTCTGGTGTGTCTTCCTTGGCTTTGGATGTCTGCTCTGGGGTCAGTTGATCACCACCATTCCCACAAGTCGGCTAAAGTTCTTGATGACTGCTGGGCATGGCACCCAGAAAGAGGAGATCCCAGAGGACGAACTGGAAGAGATGGACATGGATGAAATTGACCATGCTGAGATGGAACTGAGAAGAGGGCAGGTCCTGTGGTGCAGAGGACTCCAAAGAATCCAGACACAGATCCGTGTGGTAAATGCTTTTCGGGAAGCCATGTCTCCATATGAAGGCCTGGAGACCCCAGAGTCACGCAGCTCTATTCACAACTTCATGAGTCACCCAGAGTTCCGCATCGAAGACTCTGAGCCAGCCATCCCTCTGATTGATGAGACTGACCCAGAAGAGGAAGCGCCTACAAAACGTAATTCTGCACCGCCCCCGCCCCTTTCTCCGATCGTATCTTCTCCTAACCAGAACAACAATGCTACAGACAGCAGAAGCTTTCACCGCCATAAGGACATAATCAAGACTGCCATTCCTCAGCCCCCTGGTAGCCCCCTGCACAGCCTGGAGACATCTCTCTGATTCCATCCAAGCTAAAACCTTGCTAAGACCATGTCTGTACTACCCATGCCAAGAGCACATCACAACCCTTGCAAAGAGCATGCTTAGGAGGTCAttaaatgttctggtaatgAAATGGACAGTTTTCCATCAGTCCAGGTGTAGCTGGATGGACAAGTTAGCTAACCTACAGAGAAATGTTGGTATAGATTGAGGATTTATTTGAGGATTTCTTCCCAGGCGATCTACAGTAGTCTGAGAGGAAGCTagaaagaaaatgtatattttaatacatttacaaattgtccttaaaagaaaaaagataggAATGGAaattttttctcaattttcaaTTTGAACGAAACCTTACCCACGTGCTTTCAAGTGAAACACtgatgtgtgttgttttggctgattatattgtaataaaaattgTTTGTTTACATGCTTTTCAAAAATATACCACCTTTGGGGGAGGGGGAGTGTGGGGGGCAAAGTGCAAATAATGAACAAGACATATGCATAGTTGCTGCTGTATCTTTATGTGAGGTTTATGTTTAGGACTTAGACAGATGATATTAAGGCATTGTGGTCTGGTTTAGTGGTATGCAGAATAAATGGGGAAAAgaatata

Function

GO: NA

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286401 lncRNA downstream 164289 40163333 ~ 40163550 (-) True G210959
TU286387 lncRNA downstream 189531 40137876 ~ 40138308 (-) True G210949
TU286374 lncRNA downstream 218916 40106604 ~ 40108923 (-) True G210937
TU286362 lncRNA downstream 253071 40072385 ~ 40074768 (-) True G210934
TU286234 lncRNA downstream 272621 40054723 ~ 40055218 (-) True G210868
TU286452 lncRNA upstream 16255 40371529 ~ 40372033 (-) True G210994
TU286461 lncRNA upstream 96968 40452242 ~ 40452572 (-) True G211001
TU286488 lncRNA upstream 144020 40499294 ~ 40500630 (-) True G211025
TU286489 lncRNA upstream 145925 40501199 ~ 40504302 (-) True G211026
TU286494 lncRNA upstream 156362 40511636 ~ 40512067 (-) True G211029
XM_007238084.3 mRNA downstream 2399 40318789 ~ 40325440 (-) True gtse1
XM_007238082.3 mRNA downstream 10027 40312884 ~ 40317812 (-) True actr6
XM_022684131.1 mRNA downstream 15098 40308494 ~ 40312741 (-) True LOC103043462
XM_007252837.3 mRNA upstream 203410 40558684 ~ 40570148 (-) False LOC103026726
XM_007252836.3 mRNA upstream 203410 40558684 ~ 40570148 (-) False LOC103026726
XM_007252835.3 mRNA upstream 203410 40558684 ~ 40570148 (-) False LOC103026726
XM_007252834.3 mRNA upstream 203410 40558684 ~ 40570148 (-) True LOC103026726
XM_022684137.1 mRNA upstream 203410 40558684 ~ 40569756 (-) False LOC103026726
TU286210 other downstream 387792 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 531898 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 706339 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 787023 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 3617096 36710420 ~ 36710743 (-) True G210059
TU286446 other upstream 5984 40361258 ~ 40363237 (-) True G210991
TU286454 other upstream 17531 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 207589 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 951672 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1849862 42205136 ~ 42205636 (-) True G211539

Expression Profile