RNA id: XM_022684117.1


Basic Information

Item Value
RNA id XM_022684117.1
length 3996
RNA type mRNA
GC content 0.48
exon number 21
gene id LOC103045095
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40327839 ~ 40355276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATGTTTTCCAATGAAATGCAGATGTATCTTGAAGTTCATCTCAACAGCCTGGATCTTCAGTGAACAAAGATGAAGAAACGTTTGCAGGTGCACTGGATGGACATAGCTGATTACATGCATCCTGTTTGCCTTTTGGAATGTAGGTTTCTGCTATCCTAAGTAACTAACAGTGTTGGGAAATTCTGGATTTTGCCACTGAAGATTTAGCTTTCCCTGGAGGGAGCCTGTTCTCCGCTGTCGTGTGGTGCACTGCAGAGGAGACATGGCCCGAAACTCTTTCCGTGGGTCCAAATACAAGGCAGATGCCAACCATGATGCCGAGTTTGGCTGCACGCTCAAGGAGCTGCGCTCGCTCATGGAACTCAGGGGGCCAGAAGGATTACAGAGAATCCAGGAGTGTTATGGAGATGTTCAGGGACTTTGCTCCAGGTTAAAATCTTCTTGCACAGAAGGGTTAAGCGGTCATTCTGATGATATTGCAAACAGAAAGGATGTATATGGGAAGAATTTCATACCTCCTAAAAAGCCAAAAACATTCCTGCAGTTAGTTTGGGAAGCACTGCAAGATGTGACTCTAATCATATTGGAAGTTGCAGCCATAATATCTTTAGGCCTTTCCTTCTACAGACCTCCTGATGCAGAAAGAGAAAACTGTGGTAAAGCTGCTGGAGGAGTGGAAGATGAGGGTGAAGCAGAGGCTGGATGGATTGAAGGTGCAGCCATCCTCTTATCTGTCGTATGTGTGGTGCTTGTCACTGCCTTTAATGACTGGAGCAAAGAAAAGCAGTTTCGCGGCTTGCAGAGTCGCATCGAGCAGGAGCAGAAGTTCACAGTGGTTCGAGGAGGCCAGATCATTCAGATTCCTGTAGCAGAGCTGGTGGTTGGAGATATCGCTcaagtaaaatatgGTGACCTCCTTCCTGCTGACGGGGTGCTAATCCAAGGCAACGATCTGAAAATTGACGAGAGCTCTCTCACAGGAGAGTCAGACCATGTCAAAAAAACAATGGACAAAGATCCCATGCTGCTTTCAGGCACCCATGTTATGGAGGGTTCAGGCAAAATGCTGGTCACTGCCGTGGGTGTCAACTCTCAGACTGGAATTATCTTCACCCTCCTCGGGGCTGGAGATGAGGATGGGGACAATGAGGATGAGAAGGAAGAAAAAGATAGGAAGAAAagggagaaggaggagaagaagaaggagaaagaaaggaaaaagaaggagaagaagggcAAGAAAAGCAAAAAGCAGGATGGATCTGACAAAAACAAGAGTAAAGATGGAGGTGGTGTGGACACTGAGCCTCTCAGCAGTGAGGATGGCATTGATGGTGATGTGAAAAAGAAAACCAATCtaccaaagaaagaaaaatctgTACTTCAAGGAAAGCTCACCAAACTTGCCGTACAGATTGGAAAAGCAGGCCTTTTTATGTCAGCCATCACAGTCATTATACTGGTGGTGCTCTTTTTGGTGGACACCTTCTGGGTCCAGGGGCTTCCGTGGATCAAAGACTGCACTCCTGTCTACATCCAGTTCTTTGTCAAGTTCTTCATCATAGGGGTCACTGTGCTGGTTGTTGCTGTGCCTGAGGGATTGCCCCTCGCTGTCACCATCTCACTAGCCTACTCTGTcaaaAAAATGATGAAAGACAACAACCTGGTCAGACACCTGGATGCATGCGAGACAATGGGCAATGCCACTGCCATCTGCTCAGACAAGACTGGCACTTTAACCATGAACAGGATGACAGTGGTACAGGTGTATGTGGGAGACAGACACTACCGAAAGGTTCCTGAACCTGATCTGATTCCAGGCAAGATCATGGACCTGCTGGTCACAGGCATCAGTGTTAACTGTGCATACACCACCAAGATCATGCCTCCTGAGAGGGAAGGTGGTCTGCCCCGTCAGGTGGGGAACAAAACTGAATGTGCCTTGCTGGGGTTTTCCCTTGACTTACGCAAAGACTACCAAATCATCCGCAACGAATACCCTGAAGAGAAGTTCTTCAAAGTATACACTTTTAATTCTGTGAGGAAATCCATGAGCACAGTGCTGAGAAACTACGATGGAAGCTACCGGATGTTCAGCAAAGGAGCCTCTGAAATTCTCTTGAAGAAGTGCTGTAAAATATTGACTGCAAACGGAGAACCCATATACTTTAAACCCAGAGATCGAGATGACTTGATGAAGATGGTAATTGAGCCCATGGCTTCAGAGGGCCTGAGGACCATCTGCCTGGCTTACAGGGACTTCCCCGTATCGGAGGGTGAACCAGACTGGGACAACGAAACAGACATCCTTACAGGTCTTACCTGCATTTGTGTGGTGGGCATCGAAGACCCTGTACGGCCAGAGGTTCCTGATGCTATTAGGAAGTGTCAGAGAGCAGGCATCACTGTCCGCATGGTCACTGGGGACAACATTAACACGGCTCGCGCTATTGCCACCAAGTGCGGCATCCTCCATCCTGGAGATGATTTCCTGTGCCTTGAAGGCAAAGAGTTTAATAGGCGGATACGCAACGAATTGGGAGAGATTGAACAAGAGCGCATTGACCGAATTTGGCCTAAACTCCGTGTCCTGGCAAGATCTTCTCCAACTGACAAGCACACTTTAGTAAAAGGTATAATCGACAGCACTGTTGTAGAACAAAGACAAGTAGTTGCTGTAACAGGAGATGGAACAAATGACGGTCCTGCCCTGAAGAAAGCTGATGTTGGCTTTGCAATGGGTATTGCTGGAACCGATGTGGCCAAAGAGGCCTCAGATATCATCCTGACCGATGACAACTTCTCCAGCATTGTGAAAGCTGTGATGTGGGGGCGTAACGTGTATGACAGCATCTCCAAGTTCCTGCAGTTTCAGCTGACAGTCAACGTGGTGGCAGTGATTGTGGCATTCACGGGAGCTTGCATCACGCAgGACTCTCCACTGAAAGCAGTTCAGATGCTGTGGGTGAATTTGATTATGGACACGTTTGCCTCGTTGGCTCTGGCCACTGAGCCCCCAACCGAATCCCTACTGCTGAGAAAACCGTACGGCCGCAACAAACCTCTCATCTCCAGAACCATGATGAAGAACATTCTGGGTCATGCCATCTACCAGCTCACCATCATCTTTACTCTGCTGTTTGCTGGTGAGCAAATCTTTGATATTGACAGTGGCAGGAATGCTCCTTTACATGCGCCTCCTTCAGAACACTACACCATCGTTTTCAACACCTTCGTCATGATGCAGCTCTTCAATGAAATCAATGCTCGCAAAATTCATGGCGAGAGAAATGTCTTTGATGGCATCTTTAACAACCTCATCTTCTGTTCCATTGTGTTTGGCACATTTCTTATTCAGATTGTGATTGTGCAGTTTGGAGGGAAGCCCTTTAGCTGTGTAGGCCTCAGTATTGAACAGTGGCTCTGGTGTGTCTTCCTTGGCTTTGGATGTCTGCTCTGGGGTCAGTTGATCACCACCATTCCCACAAGTCGGCTAAAGTTCTTGATGACTGCTGGGCATGGCACCCAGAAAGAGGAGATCCCAGAGGACGAACTGGAAGAGATGGACATGGATGAAATTGACCATGCTGAGATGGAACTGAGAAGAGGGCAGGTCCTGTGGTGCAGAGGACTCCAAAGAATCCAGACACAGATCCGTGTGGTAAATGCTTTTCGGGAAGCCATGTCTCCATATGAAGGCCTGGAGACCCCAGAGTCACGCAGCTCTATTCACAACTTCATGAGTCACCCAGAGTTCCGCATCGAAGACTCTGAGCCAGCCATCCCTCTGATTGATGAGACTGACCCAGAAGAGGAAGCGCCTACAAAACGTAATTCTGCACCGCCCCCGCCCCTTTCTCCGATCGTATCTTCTCCTAACCAGAACAACAATGCTACAGACAGCAGAAGCTTTCACCGCCATAAGGACATAATCAAGACTGCCATTCCTCAGCCCCCTGGTAGCCCCCTGCACAGCCTGGAGACATCTCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286401 lncRNA downstream 164902 40163333 ~ 40163550 (-) True G210959
TU286387 lncRNA downstream 190144 40137876 ~ 40138308 (-) True G210949
TU286374 lncRNA downstream 219529 40106604 ~ 40108923 (-) True G210937
TU286362 lncRNA downstream 253684 40072385 ~ 40074768 (-) True G210934
TU286234 lncRNA downstream 273234 40054723 ~ 40055218 (-) True G210868
TU286452 lncRNA upstream 16689 40371529 ~ 40372033 (-) True G210994
TU286461 lncRNA upstream 97402 40452242 ~ 40452572 (-) True G211001
TU286488 lncRNA upstream 144454 40499294 ~ 40500630 (-) True G211025
TU286489 lncRNA upstream 146359 40501199 ~ 40504302 (-) True G211026
TU286494 lncRNA upstream 156796 40511636 ~ 40512067 (-) True G211029
XM_007238084.3 mRNA downstream 3012 40318789 ~ 40325440 (-) True gtse1
XM_007238082.3 mRNA downstream 10640 40312884 ~ 40317812 (-) True actr6
XM_022684130.1 mRNA downstream 15942 40308494 ~ 40312510 (-) False LOC103043462
XM_007252837.3 mRNA upstream 203844 40558684 ~ 40570148 (-) False LOC103026726
XM_007252836.3 mRNA upstream 203844 40558684 ~ 40570148 (-) False LOC103026726
XM_007252835.3 mRNA upstream 203844 40558684 ~ 40570148 (-) False LOC103026726
XM_007252834.3 mRNA upstream 203844 40558684 ~ 40570148 (-) True LOC103026726
XM_022684137.1 mRNA upstream 203844 40558684 ~ 40569756 (-) False LOC103026726
TU286210 other downstream 388405 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 532511 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 706952 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 787636 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 3617709 36710420 ~ 36710743 (-) True G210059
TU286446 other upstream 6418 40361258 ~ 40363237 (-) True G210991
TU286454 other upstream 17965 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 208023 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 952106 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1850296 42205136 ~ 42205636 (-) True G211539

Expression Profile