RNA id: XM_007245505.3


Basic Information

Item Value
RNA id XM_007245505.3
length 4161
RNA type mRNA
GC content 0.48
exon number 9
gene id rnf130
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 35168540 ~ 35263408 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacgcgcacacataTACGCGCTCGCGCGCGCAGACGGAGACAGAGACGGGGAGAAAGACAGTGAGCGCGAGcgagccagccagccagccagcgagcgtgtgtgtgtgcgtgcgcgcgcTCGCGGTAAACGGGCCTCGGCTTCACTCGGacattatacacacacgcacgcggACAGAGGAGCGGCGCGCGGATGACCGGTACCCCACCGCGACAGctctCCCTGCGGCTTGTGAGCGTGAGGGCAGCATGAGACTGCCCGTGCTGCCGTGATGAGCGTCAGACGAGAGATGACCCGCTCCGGCCTCTTCCTGTTCCTCCTGTGTGCGCTGCCTGGCGCCCTGGCCGCCACGGAAAAGAGCGTGGGCAGTAAGGAGGAGTACTACAGCGCCACGGTAAACGCCACCGTGCTGGACAGCAGAGGCAACCCAAAGCGGCTGATATCCAAAGACGACGGGCGGTACGGGCAGAACTCGCCAAAGGTCGAGGCCAAAGGAATCGTCCTGACGCCGGTAGCCATTAACGGGGTGGTGGACATGCAGGGCTGTTGTCCGTACACTCGTTTCGTGATCCCGCCGAAGACCACGCACTGGGTGGCCCTTGTGCAGAGGGGGAAGTGCACGTTTAAGGAGAAGATTCTGAAGGCCGCAGCCTTTAACGCCTCCGCCGTGCTAATCTACAACAACAGCTCCAAAGAGGACACGGTCACCATGGCCCACGAAGGAACCGGTGATACAGTAGCGGTGATGATCACGGAGGCGTTCGGGAAGGAGATCCTGATTCCGCTGGAGCGGAACGAGACCGTGCTGGTGTCGGTGATGGTTGGTCAGCGCGGTCCGGCCAAGAACATCAACCGTGGATCGCTGGTGTTCGTCTCCATCTCCTTCATCGTCCTGATGATCATCTCCTCAGCGTGGCTCATCTTCTACTTCATCCAGAAGATCAGAGACACCAGCACGAGGGACCGCAGCCAGCGACGACTTGGGGATGCTGCCAAGAAGGCCATCAGTAAGCTGACCACCCGCACGGTGAAGCGAGGGGACAAGGAAACGGGTCCGGACTTCAATCACTGCGCCGTGTGCATAGAGGGCTACCAGCTGAACGACGTGGTCTGCATTCTGCCCTGCAAACACGTGTTCCATAAGATGTGTGTGGACCCCTGGCTGAACGAACACTGTACCTGCCCCATGTGCAAACTTAACATCCTCAAAGCCCTGGGCATCTTGccaAACTTGCCGTGTGTGGATAATGTGGCTTTTGATATGGATCGCGTGTCCCGCAGTCAGAGCTCCAGTCAGCGGGGGGCGTTGGTGGACCTGTCAGAGAGCGTCAGTCTGGAGCCTCTGAGATTGTCCGGCTCCACCCAGCTGCCCTCAGACTCCGACCTGACCTCCCGCACCGACATCAACATCGCAGTCACCAGTGGACACTTCTTCAGCCGGAACTCTGGTTCCCCCCGCACTGTGGTCTGCGAAATGGAGCTTCCTGACATCCAGACGTCTCTGGACCTGTATGAGGAGAACAAGTCATGAGAACACGCCTCCTTGTGCTCTTGGCCCCTCCTCCCCTGTGCCCCTCCCACCTCCCAGCCTGAGGGGGGCAGCACTTTCCTACTGAAAACTAGAGAAACTCGGACAGTGACACCGATGACCGTGGAGAATGGAGGTTTAATTGCTGGAGAATGTACTCCTGACTGGAGGGTTCAGGCCGGTTAGGGCCGGACACAGAAACCCTCCTCACACTTCCagacctttatttctttctttctcttgttgACATTCTCAGACTCTCTTTTGCGAGATTTTCTCTGTTCGTtcgtttattttctcttttcgATTCCAGCGccgcctgtctgtctatctgtccgtctgtctgtctgaccgAACTCGTTTCATGTACGTTCTCTGCTGATCATTGTTTTTATCGTTCATCCACTTATATGACTCTGATGGACAGTCTAAACTGGTGGATGGACATTTGAGCCGCTCTCGTAGCTAAAAGCCTCAgaactcttcttcttcttccacgTGAGCTAAACAGAGCTCACTGCCCTCAGTGCTAACCGGTTAGCACTCGAAACCAAACTTCTGTTGACAAATCAGCATTTCTTCCCTTGTAGATCGAAGCACAAGTATTCCTCTGTACATAGAAAACGCGTTTTAGACCTGTATCTAACGGCAAGCCTGGAATAACTACACTGAGTACTACTCAGCCCCTTATACAGGGGCCAAATGTATACATTATATGTCCAAAAGTGTCCTGACACCCCTTATAAATAGTGGATTCTGCTATATTAAGGTTTAATGAATGTCCAGCCAAGTAATCGAAATTAGATTAGGAGGTAGGAAGTAGGATGGGACATAATGGAGAAGTTCAGAGTCTAGGTCACTAAGGGTCACCTAGAGAGGTCCAAAGCTCctaagagctttttttttaacttaggaTATGTTggggtaataataataaagctccattaaaaaaataccttTTGGCATGAGTTAAAATAATGAAGCTTGGAGTTATCTATTAGGATCTATAAAGACAGACGAAGATGAAGATAAAAACACCTTTAGGCTGTATGTAATAAAGCTCAACTAAACTTCTATGGGATGAGTTCAATGTAATGGCACATTAACACCTTGAATGTGAGCAAAACATACGTCCAGGTGAAACCATGTCTGAAGTTGGCATGATGACGCTTCATTAAACTGCTTTTTGATACAATGAAGCGGTTatgctccaaaaaaaaaataaataaatatgatgagttagaaaaaacaaacaaaaggacCGTTTATAACATCTCAGCAATAAATTGAAGCGAGAaagcttcattttttaaaaacatctctGGGATGTGTCGGAATGAGGACCTTCATTGAGAACATACTACTAATGGGTTATGTTTGAGTGATAAAGCTCCATCAGTAACATGTCTTTGGATGAGTTGGAGTGATGGAATGCCATTGAAAGCATCTTTAGCATAAGTTAAAGTGATGGCTCTACATGAAAAATCACCTTTAGTGTGAGCTAAAGCAATGGAGCTCTATTCAAAACACTTCTGGGAAAAGTTAGCTTGATGATGCTCTACTAAAATTTCTTTGGGATTAGCTGAAGTGATAAGAGTTTGGGTGACAAAGTGCCAAAAGTTAAGAACATCTTCAAGATTAATTGTAGTGATGATGCTCCAATAGACACATCCTGGTGATGAACTAAAGGTGACTCGACTGCATTAAGAACATCAAGTGATGAAGCTCCATTTTGTAAGTTATTTATTTGAACTGAGAACTGAGATCTTTGGGTTGAGTTGGAGAGGAATCGCTCTGTGATTAACACCCCTGGAATGACAAAATTGCAGTAAGAACATCTTAAGCAGCTTTTGAAAGATGGAGTGCCATTATTGATCCATACTGTACAAAAATCTTATATTGGCAGGTTAAAGTACCTGGAATGTGGGCAATAACTGAAGCAATGTTGtctacatttacagtaaatacacatttttacatgCAAAGGCTTCAGTTTAAGAGTGCAAATCTAATCCATCCTCTCACCCTGACCTCACAAAGCTGAGCTCTCACGGCTGAATGCAATCCAGCCCTCACAGCAATGTCCCAAGCCTTTCTTGAAAGGGTCACGTCTGTTCCTACTGCAAAGGAAGACAAATCTTTTGGTTTAAGATGAAAAACGTGGATTTAGAGTGGGTGAACTGATGTACGGATACTTTTAGACATAGACTGTATATGAATATATCCAgtatttgcatatatatatatatatttatatatatttacatatatatatctatacattCATATATATCTCTGAAGTGACCTCTTagcactgtctgtctctcctggACCTCGTCGCTCGTCTCTTTGTGTTccgtttttttgtattttgaaggTGATGGTCTGGGATCACACAGGGCACCGGTCAGTCTGCTCTGGTTCTGGGTCACTGTAGCTCTGTTTTTCCTCCAGATGGGTGCAATcagtagggttagggttagaggtGGCGGGGGGTGTAGTACCTGTGACCTGGGACTGGTTCTAGACTCTGGGGCTCTGTGTGAGAACTGGTCCTGTTTGTGTTGGTGGTGCAAATGGATGACCTGTGTTGCGTTCTGCCTCAGCATTAAAACTCGTCATAACTGCC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15701 RNF130, GOLIATH; E3 ubiquitin-protein ligase RNF130

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284808 lncRNA downstream 22960 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA downstream 26228 35136218 ~ 35142312 (-) False LOC111195784
TU284811 lncRNA downstream 28433 35139450 ~ 35140107 (-) True G209872
TU284805 lncRNA downstream 30454 35136254 ~ 35138086 (-) False LOC111195784
TU284746 lncRNA downstream 535324 34632785 ~ 34633216 (-) True G209814
TU284846 lncRNA upstream 72013 35308319 ~ 35308594 (-) True G209894
TU284877 lncRNA upstream 411096 35647402 ~ 35648209 (-) True G209924
TU284882 lncRNA upstream 466483 35702789 ~ 35703454 (-) True G209929
TU284901 lncRNA upstream 599897 35836203 ~ 35836645 (-) True G209946
TU284906 lncRNA upstream 637569 35873875 ~ 35878253 (-) True G209951
XM_022684023.1 mRNA downstream 1315 35147631 ~ 35167225 (-) False ctso
XM_022684022.1 mRNA downstream 1325 35147631 ~ 35167215 (-) False ctso
XM_022684024.1 mRNA downstream 1331 35152905 ~ 35167209 (-) True ctso
XM_007245508.3 mRNA downstream 382873 34774062 ~ 34785667 (-) True aga
XM_022684016.1 mRNA downstream 409449 34741691 ~ 34759091 (-) True LOC103045435
XM_022684035.1 mRNA upstream 1453293 36689599 ~ 36691324 (-) False LOC111195785
XM_022684034.1 mRNA upstream 1453293 36689599 ~ 36691324 (-) True LOC111195785
XM_022684365.1 mRNA upstream 1553723 36790029 ~ 36792803 (-) True LOC107197706
XM_007252895.3 mRNA upstream 1557076 36793382 ~ 36804302 (-) True LOC103044642
XM_007252896.3 mRNA upstream 1573001 36809307 ~ 36810496 (-) True c24h12orf73
TU284750 other downstream 418334 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 531241 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 536222 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 893947 34234918 ~ 34274593 (-) True G209660
TU284515 other downstream 955691 34170767 ~ 34212849 (-) False G209640
TU285068 other upstream 1474114 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 4291327 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 4377412 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 4410048 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 4696832 39933138 ~ 39940047 (-) True LOC103023530

Expression Profile