RNA id: XM_022684026.1


Basic Information

Item Value
RNA id XM_022684026.1
length 2335
RNA type mRNA
GC content 0.45
exon number 10
gene id rnf130
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 35168540 ~ 35263408 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGCGGACAAACACAAAATGGCGCCGAGCGCGAGTGAGGGAGAACCGAGGATCGCCTGGGAAGCGAGGCTGCCCCTTATTTTCGGGGAGATAAAAGGAACAACTTCCCAACTAAAACAAAGctctCCCTGCGGCTTGTGAGCGTGAGGGCAGCATGAGACTGCCCGTGCTGCCGTGATGAGCGTCAGACGAGAGATGACCCGCTCCGGCCTCTTCCTGTTCCTCCTGTGTGCGCTGCCTGGCGCCCTGGCCGCCACGGAAAAGAGCGTGGGCAGTAAGGAGGAGTACTACAGCGCCACGGTAAACGCCACCGTGCTGGACAGCAGAGGCAACCCAAAGCGGCTGATATCCAAAGACGACGGGCGGTACGGGCAGAACTCGCCAAAGGTCGAGGCCAAAGGAATCGTCCTGACGCCGGTAGCCATTAACGGGGTGGTGGACATGCAGGGCTGTTGTCCGTACACTCGTTTCGTGATCCCGCCGAAGACCACGCACTGGGTGGCCCTTGTGCAGAGGGGGAAGTGCACGTTTAAGGAGAAGATTCTGAAGGCCGCAGCCTTTAACGCCTCCGCCGTGCTAATCTACAACAACAGCTCCAAAGAGGACACGGTCACCATGGCCCACGAAGGAACCGGTGATACAGTAGCGGTGATGATCACGGAGGCGTTCGGGAAGGAGATCCTGATTCCGCTGGAGCGGAACGAGACCGTGCTGGTGTCGGTGATGGTTGGTCAGCGCGGTCCGGCCAAGAACATCAACCGTGGATCGCTGGTGTTCGTCTCCATCTCCTTCATCGTCCTGATGATCATCTCCTCAGCGTGGCTCATCTTCTACTTCATCCAGAAGATCAGAGACACCAGCACGAGGGACCGCAGCCAGCGACGACTTGGGGATGCTGCCAAGAAGGCCATCAGTAAGCTGACCACCCGCACGGTGAAGCGAGGGGACAAGGAAACGGGTCCGGACTTCAATCACTGCGCCGTGTGCATAGAGGGCTACCAGCTGAACGACGTGGTCTGCATTCTGCCCTGCAAACACGTGTTCCATAAGATGTGTGTGGACCCCTGGCTGAACGAACACTGTACCTGCCCCATGTGCAAACTTAACATCCTCAAAGCCCTGGGCATCTTGccaAACTTGCCGTGTGTGGATAATGTGGCTTTTGATATGGATCGCGTGTCCCGCAGTCAGAGCTCCAGTCAGCGGGGGGCGTTGGTGGACCTGTCAGAGAGCGTCAGTCTGGAGCCTCTGAGATTGTCCGGCTCCACCCAGCTGCCCTCAGACTCCGACCTGACCTCCCGCACCGACATCAACATCGCAGTCACCAAGGAGTGGTTTATTGTGGCGAGTTTCGGGGTCCTCAGCGCTCTGACGCTCTGCTACATGATCATCCGGGCCACCAACCACACCAGCCCCTACACTGAGTGGGAGATTGATTGAAGACGAAGATTTGATATTAACAAAATCTCTGATATTttcataattacatttttgcattCAAAATCAAGTCCGTTCATGTAATTCTGAGATTTCACTCTTTTCACTGTTATTAAATCAGTATTAGAGGTGTGGAGTGTTTAGACTGTGACCTGCTGTATTAATCACTAACATCTGAACGTATCTCTTTATGATGAGGCTTTTTATTCTGTGTGCCAAAAAACAAATCTTTTAATACACACTACTCTTCAAAAGTTTCAAAATCATTATTTGTAACCATAGTAAAGCAaatctaatatatttttataataaaaaaatgatttaaaatttgTTGAGAAACtaatataataacaaatataacagaataatatagtaataatatttattcCAGCATATATTGTTGATATCAGAATCCATTTAATGTCCACAATTTAAGTTGTATAAGTAACATCCAgacaatttattatttatctattgaaattaacatttaaaactaataataatttctatTAAAATCAACAACCACAATGAATTTCTgattgcaaataaaaaagaattcgtttttaaggtttttaacaAAGATTAACCTtcaaaataaatttataataaaacttATATCCATACTGTACATTATAGAATATATTTCTGATAAAATTAACATTCCGAATAAActactaataatatttaatttgaataaaGTGTGCATTCAGAATGATGATGATTAATAATGATATTGTAAACTTTTGAATGGTGGTCTTTATCTTTCAGGAAAGAAATGTAAATGGTAGCAGCAGCTTTTTAGTGTAGAGTTAATTTTGTATTCATTTTGCTGATTGTCTTTGTGCTTTTTTAGAAAATGGGAGAATGAAAAATAAACTTTGTACTGtataaaactgaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284808 lncRNA downstream 26639 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA downstream 29907 35136218 ~ 35142312 (-) False LOC111195784
TU284811 lncRNA downstream 32112 35139450 ~ 35140107 (-) True G209872
TU284805 lncRNA downstream 34133 35136254 ~ 35138086 (-) False LOC111195784
TU284746 lncRNA downstream 539003 34632785 ~ 34633216 (-) True G209814
TU284846 lncRNA upstream 44911 35308319 ~ 35308594 (-) True G209894
TU284877 lncRNA upstream 383994 35647402 ~ 35648209 (-) True G209924
TU284882 lncRNA upstream 439381 35702789 ~ 35703454 (-) True G209929
TU284901 lncRNA upstream 572795 35836203 ~ 35836645 (-) True G209946
TU284906 lncRNA upstream 610467 35873875 ~ 35878253 (-) True G209951
XM_022684023.1 mRNA downstream 4994 35147631 ~ 35167225 (-) False ctso
XM_022684022.1 mRNA downstream 5004 35147631 ~ 35167215 (-) False ctso
XM_022684024.1 mRNA downstream 5010 35152905 ~ 35167209 (-) True ctso
XM_007245508.3 mRNA downstream 386552 34774062 ~ 34785667 (-) True aga
XM_022684016.1 mRNA downstream 413128 34741691 ~ 34759091 (-) True LOC103045435
XM_022684035.1 mRNA upstream 1426191 36689599 ~ 36691324 (-) False LOC111195785
XM_022684034.1 mRNA upstream 1426191 36689599 ~ 36691324 (-) True LOC111195785
XM_022684365.1 mRNA upstream 1526621 36790029 ~ 36792803 (-) True LOC107197706
XM_007252895.3 mRNA upstream 1529974 36793382 ~ 36804302 (-) True LOC103044642
XM_007252896.3 mRNA upstream 1545899 36809307 ~ 36810496 (-) True c24h12orf73
TU284750 other downstream 422013 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 534920 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 539901 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 897626 34234918 ~ 34274593 (-) True G209660
TU284515 other downstream 959370 34170767 ~ 34212849 (-) False G209640
TU285068 other upstream 1447012 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 4264225 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 4350310 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 4382946 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 4669730 39933138 ~ 39940047 (-) True LOC103023530

Expression Profile