RNA id: XM_007245512.3


Basic Information

Item Value
RNA id XM_007245512.3
length 4758
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC103036564
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34659490 ~ 34674207 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagaaaagaagacagagaaagacagagcggGGTAGAAAAGAGAAGATAGGAAGAGGCGGGGGTGGTTGTTAAATAAAGAGATGGAGGGGCTATGTGTTGGGCGGAGACTGGTGGTGGTCACATGATGGGGGAAACCTTTTCAGGATTAGCCTGTTAGCTGATTAGCATATTCACAGCTTATCTCCCCCACAACAACTCTCACTTTTTCCACTTCAAGTATTcgaaggatttgattgcattcagccacattggagctTCATTAAGATCGGGTTCTGGTGCTGAACACTCAGACACTCCAACgctactggatggagctccgtCAACACTCTAGCAAGCCTTTTATACCCCTCCAACCCAAACCAGGCATTGAAAAAGATGAACTTTGGGTCATGTGGTCATGGCTGTTGTAGAAAGTCTGATTCTATTGGTCAATGATTCTTCTCTATGGACATTATACAAGCTGTATGTGCATTTAAACACCTGTGCCAGCAGGGGGCGCACTTTAATGCAGGTGAATGAACACGTAACTGCTAATATTAGGAGCAGTTCAAACAGTTTTGAAGGCGTAAAGATATTCGGACACTTGATTGGTTAGGCTAATCATTCTAACGTTAAACAACATTGCTCCTCTAACCACACCCACTCAAACCCTACCTTCCCCTACCTTTTACCCTGTCCTGTCCAAAATTTTGGATATATGAAGTTATTTGGACACCTAATTGGCCAATCTGGCCTCTCAATGTAACCACACCAACTTTAGCCTCGCCTTCACACCCACCCTTTCTATGGCCCTGTCCCTCACATGACTTCCGTGACCTACTCAGCCTGGAGAAATCCTCTGGGTAATCCGTGCTCTCCTGCACTCACCCCGCCCAATCCCATCCAATCCCGTCCCCTCCACCTGTCCAGCCCGAGCCCGGAGACGAGCCGGTCACCTGAAGACGAGAGCCGACCGGAGAACCGAGCCCCGGGAATGCCCAGCTCCTGCTTCCCCTCGCTCCCCCACAGGCCCGGCAGATCCCTGAGCGTCGGTGGGTGAGCGCTGGCACGGCGGGTGGgcgctgatgtgtgtgtgtgagtgtttgtgccACTCAGTGAAGGATGCAGCGTCTCCTGGTGGTTcaggtgctgctgctgtgctgttgcCGTTTGGTCCAGCCGTTCTGCCCGTCGCAGTGTACCTGTGTGTTCCACTCCCGCAGTGACGGAACCGGGACCAGGACCGTCCTTTGCAATGACCCGGACATGTCCGACATCCCGGTGAACGTCCCGGTGGACACAGTGAAGCTGCGGGTAGAGAAAACGGCCGTGCGTCGGATCCCCACCGAGGCCTTTTACTACCTGACGGAGCTGCAGTACCTGTGGATCACTTACAACTCCATCACCTCCGTGGACCAGGGCAGCTTCTACAACCTGAAGGTCCTGCACGAGCTGCGGCTGGACGGCAACCAGATCGCCACCTTCCCCTGGGAGTCTCTAAGGGAGATGCCTAGCCTGCGGACCCTCGACCTGCACAACAACCGCCTCACCAGCATCCCCGTGGAGGCGGCGCCTTACCTGGTCAACATCACCTACCTGGACATCTCCAGCAACAAGCTCACCACCCTGCCCTCTGACCTGGTGGACATCTGGCCCCCGTTCTCAGGAATGCCGCCCACCTTCAACGCTTCCCAGAAGATTGTGCTGGGTCTCCAGGACAACGCGTGGTTCTGCGATTGCAGGATCTCCAAACTCATCGAGTTGTCCAAGATGACCGACATCCCCGTGGTTCTGATGGACCAGTATTTGTCCTGCAGTGGCCCAGAGAACCTGGCTGGGGTTCTGTTCCAACGAGCGGAACTGGACCAGTGCGTCAAACCGTCAGTGATGACCTCAGCCACTAAAATCACGTCATCGCTCGGCAGTAACGTTCTCCTCCGCTGTGACGCCACGGGATATCCTACCCCCACCCTCATGTGGAGTAAAAGGGATAGGTCTGCTTTTAATAACACAGTTGTGCAAGAATCTCCTGGTGAAGGTGTCCGGTGGTCCATCCTCAGCTTGCACGGGATCGTGGTAAAGGATGCTGGCGTGTACCGCTGCAAGGCCAAGAACGTCGCAGGAAATGCGGAGGCCTTCATCACCCTCTCCCTGGCTGGGATGGACTCTACAACCGTGTCCCCGCCACCGAGCATCACCAAGAAGCCTGACGAGAATCCGGGACTGGTTACCCAGTCTCCACCTCCAGTCACTGGCACTGTGGTTCTGACACCTACTACTACTTTCATCCCAACGACCTCCAAACCGCCCATGACCACAGTATCACCTATGTCAAGCCGGATGAACCTTGGCCCGGGTGGAGGCATTCAGAGGTCCCCACCTGCTGGAGATACACCGGCTAAGGTTCAGCAAGGAAAGGACGTCAAAAGTCTGAGTGGGAGCAACAAAACGAGGAAAAAGGGGAGTCCCTACATCAAGGATATTGAAGTGGTGGAAGAGACTGGAGATACGGTGGTTGTGTTATGGACAAGTGAGGATTTGCCTAGCGACACACCCTTGTCTGTGGCGTACTTCCCGTACGATGCGGAAGACAGCAAGGAAACGTTGGAAACTGAGGTTGGGTTGGGTAAACTTCTTTTGGAGAACCTGTTTCCCAACCAGGCCTACACGGTCTGCTTGGTTGCCAAAGGTTACATGTCTGGAAAGGGTCAGTGTGTGAATTTTAGTACTCTGGACGCCGTTGCGGACGATGGCCAGAACAAGTGGCTAATGATAGCGAGTGGGATTGCTTGCGCTGTTGCACTCCCACTTATTATTCTTCTCCTTTATAAGATTGTATCGCTCTACTGCAAAGGTAGAAGCGGTAGAAGTGGTGGAACGGATGAAGACCTCTCGAAAGAGACATATGTAAAGTTTGAGACCCTCACAATGAAACAGAGGACATTGAACGGACCAGGGAATGACCTCTGGGCTCGACGGCAGACGCAAGAATCGGAAAGGATGCTACTGTGTTCACGATCAAGTATAGACTCCCAAATGACCTACAAGAGCGACAGTTCACGGTCGGAGTACCTATGCTAGCTCTGCGTGAGTTAGCTACTAggaattaccatatttttctgaAACAGTGTTGCCTGTGCTCCAACTCCACTGGTTGCCGAATAAAGACAATGATTGACAATAAATGAAATGAGCATATTGGATGTATTAGTGCTTAAGATGTCCTAGATCACACTTGTCCTTCTACAACCAACCTGCTAGCACAGGAAATggttatacatttatttacaggatgtgttttttttacaggaagTTTGTAATCAGTTGCAATCTCTCTCTGGGTGATGGACATGAGGTAGCTTTCTGTTTAAATATGAGAATATCTTGTATACCAATGACTTTATGTAAGCTTGGAAGCCTTCAGTTCCATAGAAATAAAGCCAAAACTAATCGGCCATGTTGAAGTCTGTGCAGTAAAGAGCAGAGGCGGAGCCAGACTTGCCTTCATTGACTTTACAGTGCAGCCTGAAGGACCAGAAGCAGGACTTCAGTATTCATAGTTATTTCAGTAAGTGAAACTTCCCAACACTACAAGTGCAGTTCATGTTGTTTTTCTTAGCAAACTTAGATTTTGAGGTCAAGTTATagcaaattaaaaagaaaatatgggCAGGAATGTTTTGACATTAAACAGTATGGAGATGGGCGGAGCTAAACGTCATACTGCAACCACccagcagaggcactagaccTGGTGGCTTTGCTTCTGAGAAACCATGCTTATATAAAGTCATTGATCTGTACTAATACTGTGATGAGACATAAGTAATTGGATGCAGAATGTGGGAAACATCTACTATAGGCTACTCTTGAGTTTGTTGATGTGCTAACACTGTCAATGTATTGCCTTATACGAGTCTGTTTTAATTCCTgtttatttcttcctttttttaatggacggttttatttattgtacattttaagATTAAACATTAAAGATTTTTTATGATGTAAAATATTCATGTGGAGatgtaaatactgcatattcttccctatttatacattatagtatctcaacataaaatataatttaacctTTACATTAAATGGTTTGGGCTAAAATGTCTTCAATATCTTTATGCTTTAAAGTCTGTTTAATTCAAAGAATCTCTTATTTGAAGTATATATAACTTTGTGGGGGTGAACAGACTACATATATAGTGTAACTGTATCAACAGTATAATCTGTATAAACAATATTGCAAAGCCTTGCCAACCACACATATACATGTATTATGTCCAGTTTTGCCATGTCTTTTGTGATCAATCTGCCATCTTTTTCAACCagataaactttaaaaaatggatttagctgttttctttctttctctgattAAGTCTAAATTCCCTACATtgataattctgtgtttttatgttctgTTTAGGCAGTATTAACATTTGCAAACTTTGTTCGCTGTAGCTAAAGATATTTAAGGACTTGTTTGGGTGATGTTATCCTGTTGGTTCAAGATTTATGAGATTATATAGTAATTTTGAGGTATTTacacagatttaaaaataatcttaGTTTAACCTTTAGCTTGCTCCTCTTGAGGCAGTGTTTAGTCTGTTTAGAATCATTATTCTGTTTTAAAAGCTACTCCCCTTTTTAACTTTGTTACACTGGTTGCCACTGGCAGCAACACAAGCCAACAGCATGATCCATCCACCCCCATATTTAACAGTTGGACAGGAGATAGTTTCATgagataaaaaaca

Function

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284746 lncRNA downstream 26274 34632785 ~ 34633216 (-) True G209814
TU284744 lncRNA downstream 29156 34629587 ~ 34630334 (-) False egf
TU284716 lncRNA downstream 46094 34610036 ~ 34613396 (-) True G209793
TU284721 lncRNA downstream 92972 34563439 ~ 34566518 (-) True G209798
TU284562 lncRNA downstream 272855 34386145 ~ 34386635 (-) True G209682
TU284808 lncRNA upstream 450956 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA upstream 462011 35136218 ~ 35142312 (-) False LOC111195784
TU284805 lncRNA upstream 462047 35136254 ~ 35138086 (-) False LOC111195784
TU284811 lncRNA upstream 465243 35139450 ~ 35140107 (-) True G209872
TU284846 lncRNA upstream 634112 35308319 ~ 35308594 (-) True G209894
XM_022684364.1 mRNA downstream 3006 34620461 ~ 34656484 (-) True egf
XM_007245519.3 mRNA downstream 429609 34221879 ~ 34229881 (-) True tmem144
XM_007245520.3 mRNA downstream 438950 34211565 ~ 34220540 (-) True fam198b
XM_007245527.3 mRNA downstream 657879 33909109 ~ 34001611 (-) True pdgfc
XM_022684346.1 mRNA downstream 805084 33853069 ~ 33854406 (-) True LOC111195843
XM_007245511.3 mRNA upstream 1919 34676126 ~ 34708056 (-) True gpm6a
XM_022684015.1 mRNA upstream 52955 34727162 ~ 34731836 (-) True spata4
XM_022684016.1 mRNA upstream 67484 34741691 ~ 34759091 (-) True LOC103045435
XM_007245508.3 mRNA upstream 99855 34774062 ~ 34785667 (-) True aga
XM_022684023.1 mRNA upstream 473424 35147631 ~ 35167225 (-) False ctso
TU284739 other downstream 22191 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 27172 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 384897 34234918 ~ 34274593 (-) True G209660
TU284514 other downstream 446641 34170767 ~ 34212849 (-) True G209640
TU284515 other downstream 446641 34170767 ~ 34212849 (-) False G209640
TU284750 other upstream 35564 34709771 ~ 34750206 (-) False LOC103045435
TU285068 other upstream 2036213 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 4853426 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 4939511 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 4972147 39646354 ~ 39795941 (-) False atp8a1

Expression Profile