RNA id: XM_007245520.3


Basic Information

Item Value
RNA id XM_007245520.3
length 3069
RNA type mRNA
GC content 0.51
exon number 5
gene id fam198b
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34211565 ~ 34220540 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGCTTTTATACTCAAacactttagaaaaaaaaaatccatggaactttgttaatgtttttttctctctctcgtgcttCAGTTTAGAAGGTCGCTCGTGCTGCCAGATCACCTCAGGATCTATGAAGAACGTGCCTATGTATAAAGAAGATGATCTAAAACCTCCACATCTCCAGCTTTACTGAAGATTATCTCCTTGAGAGACCCAAATATCCCGGATTTAGGGTGAAAGGGTGAGGCTGGCTGGACTGTCTCCGGAGGTTCAACCAGTGCACGTCTCCTTCCAGTGCGGTGTGGAGGAGATACGCGGTGTGGGAGGCGGTAAATCAGAGGGAACACTGGATATACACTGGGTTTAGTGGGACAGCAGCAGCTTGTGAGCAGGACCAGGAGCTGGCTCTATAGTGACCATGTGGATTCTCTCGCGCTAATGGAGCGGTGCGTAATTCCTGCCAGCCTGCTCTGTCCCAGGCTCTGCAGAGCGTCCGGCCGCCTGTGGCGGTGGTGGAGGCACGCCCGTGCCCGGAGGAGCGCGCTGCTGGCCGGCCTGTGCTTCGTGTACCTGCTGTTCGCCGTGCTCCAGGTCAGCCCCTCGCCGGCTGCTGGGAAACCGGGCGTTGGCACCGGTACCTTTGTCCCGTTGCGCCCTGGGAACGCTGGCCAGAATACGCACGAGCCTCCGGCGCCCACACGCTCTAACGTGGTGTACATCACCCTCAGGTCCAAACGGCACAAGCCCGCCGTCATCCGGGCCACGCTGAAGCCCAAGCAGCGCAGGAAACGGGGCGCGAGGAACCTGGTGGCGCGTGACACGCAGGCGCGCGGGGATAAAGGCACGCATGTCCAGGACGCATGGCAACCAAAGCGCACCAACtacaacagcaacagcagcaccGATACTGACCCCTGGACGCAGGTCATCCAGCGGGGACTGGCTCTGTACAGAGCGGGCCAGCGCGTGCAGGAGGATGCCACGGATCACCGTTATGCCAACAGTGGCAGCAGCTCCATCAGGATCTACAGCCAGAAGCCTCCGCCGTGGCTCAGCCAGGAGGACATGGCCCACATGCGCCTTCTGGCCGGCAGCAGGGTCAGGACGCTGGAACAGGTCCAGCCTGAGGGGTCTCAAGCTGTCCTACTGTTCAGGGGTGAAGTCCAGGGTACCCCGGACCCCTCAGACCCCTCACAGTGCAGTAGGGGAGGATGTGGTGTCATCAGGTCTCCAGTTGATATGAGTGAAGTGTTCGCCTTCCATTTGGACCGGGTCCTAGGACTCAACAGGAGCCTGCCCACTGTCAGCAGGAGGTTCCGGGCACTGGATGGTCAGCTGTGTCCTGTGATGCTATGGGACCCGACAGTCAGTCCTGTATCTGCTCAGCTGACCTGGAGCTCGTACCAAACCTTCCTCAAACACAGGTGTTGGCAGCGTGGCACGCCGAAGCCTGAGTGGGGCTGTACCAGCATCCACCACCATGAGTGGAGCAAAGTGGCACTGTTTGACTTTCTATTGcagATCCACCAGCGGCTGGACCGGAACTGTTGTGGATTCAGGCCGCTCCCAGAGGACAGCTGTGTTGTCCTGGGTTACCATGGTGAATGTGGGGACGTAGATGTGGAACTGTCTAGTATCGTTCACCGCAGACATGACCCCCATCACCTCGTCTTCATCAATAACAAGGGCTTCTTCGACCGGGATGAAGGAAACCTCGACTTCAGACTGCTGGAAGGAATCAAAGAGCTGCCGGATGTGGCCGTGGGTGTGCTGCGTTCTCAGCGTTTGAGGGAGAAGCTCTTGCAGTCTCTGTTCCTGGATCAGCTGTACTGGGACAGTCAGGGTGGACGGCAGGGCATCGAGAAGCTCATTGACGTCATTGAGAGACGGGCCAGAGTTCTGCTCAGATACATCAACGCCCACGGCATCACAGTCATACCCATGAACACATAATGATCCAGATGAAGAGGACTCTTAGTTTATtctagaaatagaaaaaaaattgcttttttacCTTAAATGTCTGTCACTGGTatgaaagaaaggaaaatgcAGTCAAAATGTAGTCCAGAACTACTGATGAGAACCAGAACTGCTCAAAACATCACTCTGACAGTGTGAAATAGAAGACTTGACCATTTTATAAACTGAAAAGCATGGAGGCACATACAAACAATATGATGATGGACAAAAGTGAGATTTTGTCTTGAATTATTGGCTGTTGTTTACTTTCTATTTTTACCATCCATTCCATCACTGTTTCCAGGACTTGctgcactatatggacaaaagtattgggacatttACAGGAACTTTTAGGATGTCCCATTCTAAACCTCTGGAaactaatgtgtgttttttttttttttaagattaaatataaaaacacagctgTCATATGTTctgctaaataaaaatgttcagaaccctatatgttttattctgtgtgcaTTGCTCCCTTAAACATGACTGTATCATTTGAATAGGACTCTCCGTtgcagataaacaaacatgaatCTTTTGGCACCATGCCAGGCATGGGCTACAGGGGCACACAACCCCCcagcattaagctgtggagcagtgataCTTTTGTCTGGGATGAGTTGGTTGGGGAGTTGTGGGGTGGTGTTAATCTATTCAACAACTTGACTTCATTAAAGTTTGAGTTGCTGTATGCAATCAAATTTAGTGATCGACCGATAGATCGGCCGGTCGATTAATGCCATTTTTAGATTATTGGAATCAGCTGATATCTGCGCCCAAAAGGCcgattttttaatgaatgtctCAGACTCCGCTCTGGGCAGCACTGTATGCTGTTCTGTAGTAGAGTCGTTAGAGCTCCCCCTAGTGTCCATTCCACCATCCTACTGACACACAGCAGATGAGCTGAGGAGCTCAGTTCCCCAGAACCTGCAGAGCTTCAGATAGAGCTGCGGAGAACAGCTTCACTTCAGCCTCAACTGGATCCAAACTGGACAGaTGACAAAGGTGGAtatcaaggtgtacttttcagAGGATGCTGTGGCACCCTCTGACTGGACTATTTACACTGGAAAGAACTACTTTCCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651808.1 lncRNA downstream 22936 34170756 ~ 34188629 (-) False LOC111195783
XR_002651807.1 lncRNA downstream 22936 34170756 ~ 34188629 (-) True LOC111195783
TU284490 lncRNA downstream 43154 34168174 ~ 34168411 (-) True G209628
TU284484 lncRNA downstream 59897 34136212 ~ 34151668 (-) True G209625
TU284480 lncRNA downstream 83789 34124362 ~ 34127776 (-) True G209623
TU284562 lncRNA upstream 165605 34386145 ~ 34386635 (-) True G209682
TU284721 lncRNA upstream 342899 34563439 ~ 34566518 (-) True G209798
TU284716 lncRNA upstream 389496 34610036 ~ 34613396 (-) True G209793
TU284744 lncRNA upstream 409047 34629587 ~ 34630334 (-) False egf
TU284746 lncRNA upstream 412245 34632785 ~ 34633216 (-) True G209814
XM_007245527.3 mRNA downstream 209954 33909109 ~ 34001611 (-) True pdgfc
XM_022684346.1 mRNA downstream 357159 33853069 ~ 33854406 (-) True LOC111195843
XM_022684363.1 mRNA downstream 366614 33840987 ~ 33844951 (-) True mrpl18
XM_022684011.1 mRNA downstream 399243 33800102 ~ 33812322 (-) False grhpr
XM_022684009.1 mRNA downstream 401066 33800102 ~ 33810499 (-) True grhpr
XM_007245519.3 mRNA upstream 1339 34221879 ~ 34229881 (-) True tmem144
XM_022684364.1 mRNA upstream 399921 34620461 ~ 34656484 (-) True egf
XM_007245512.3 mRNA upstream 438950 34659490 ~ 34674207 (-) True LOC103036564
XM_007245511.3 mRNA upstream 455586 34676126 ~ 34708056 (-) True gpm6a
XM_022684015.1 mRNA upstream 506622 34727162 ~ 34731836 (-) True spata4
TU284339 other downstream 606576 33602099 ~ 33604989 (-) True G209529
TU284258 other downstream 1255480 32955615 ~ 32956085 (-) True G209458
TU284055 other downstream 2693673 31517433 ~ 31517892 (-) True G209303
TU283995 other downstream 2937163 31273868 ~ 31274402 (-) True G209256
TU283958 other downstream 3111704 31098844 ~ 31099861 (-) True G209224
TU284540 other upstream 14378 34234918 ~ 34274593 (-) True G209660
TU284739 other upstream 409047 34629587 ~ 34637299 (-) False egf
TU284743 other upstream 409047 34629587 ~ 34632318 (-) False egf
TU284750 other upstream 489231 34709771 ~ 34750206 (-) False LOC103045435
TU285068 other upstream 2489880 36710420 ~ 36710743 (-) True G210059

Expression Profile