RNA id: XM_007246393.3


Basic Information

Item Value
RNA id XM_007246393.3
length 3723
RNA type mRNA
GC content 0.41
exon number 15
gene id LOC103041350
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39239951 ~ 39253228 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaggCTGCTAATGTGAGAGTATCAATAATCAAGATATTCTAAAGtttaatatggattttttaatgataatgaaCTAAAATCTTCCATTCtaatttagaaatgactttattttaagaattagaAGTGAAAGGATTGTGTGCATTTTAAAGTTGATTAGTTAGCAACGCCGATTCACATGAGAAAGTAAGCTCAGTGTTTTATAACctattgatttttttcatttttcagaagaaaaatctaaaatgaagTTATGAGCAGCcattatacacatacatatttgCATAAGACAACAGGATTAAAGCAGTTCAGGGGAAAGAGTGTGTATGGTGTTAGCCATGTCTTCAATGGCTTGTGTGATGTGCACATCACAACGTCCAAATAATCCCAGTTTAAGGTAGTGTACAGTAATCTATACAGCAATACAGAGATTTCTGTGATGACCACATGCTATTAGAGGAGAGCATAGTGTCACTTTTACTCCTTCTTTTACAAAAGTGACCAACATGTACTATTTGCCTGCAGACAGCTTTCCCCTGATTTCACTATAGACCATTCTGATTCTAAATATTGTGTTAAGAAGTAAAAGTACATCCTTATAATTTCAAGATGTTTTTTGCTtacttctcaaaataatgacttagtttcTGAAAAATAATAGGATAGCAATTTACTTCAtaatgagaaagaaaaataacgTAGTAAAATAGCTTAGAAAAATAACTTAGTATATCAAAGTAAAGACTTAGTATCTTACAATAAAttgatagcatctcaaaataaggaattcaaatttcaaaataacgacttagtatctcaaaataatgagatagtatctcaaagtaatgaTTTAGTAAGGTAATAATGagaaaacaatatttgctggatttcttattttgttttgatATGTTACATTTTTGTGCACATATTACTCAAAAGGAACATCAGACCACTAATAATAGAATACAGACCACATTGATAATAGAATACACATCTGCAAATATCACTTTTGACCACTTTGTTACTGTGTAGTCAGCAGATTTCAACAGTTTAGGACATATAGTTATTAAATCCATATTTGCTAATTTGGCTCAATATTGTTTAGGCCTAATATACACTGGTTCAGCCACTCAGGTCAAAAGAACTGATCTTTCAGTGTTCCTCAGCTGCCCAAGCtccatttaaagtaaataatagaACTGCTAAAATAATTTATCCTTTTAAGGTATATCTTGAAGTACAATTCTTATATATATGCTAAAAGCCCCTGACATGAGCACACACCCACTTAAATTGTGGTTACACTGTTCTGTTATGCGGAAgttgacaaaaaaagaaaaaagaaaaaacccaCTATTTCACACAACTACGCCTACATGCAGTTAACCACACCTTGGGCTGAAGCGAGTCAGAGACGGGGGTATAGGGTCACATAGATGACACTCTGAAAAAGGGAGGACACCATCCAGCAGCGCGCCCAGTGAAAGGCAGAAAagAATGGCAGCGTGGGATCTGTCAGTTATAGTAGAGGACATGGGCCCTGAAGCCCCACCCCTCAAAATCAGTGTCACCTCAGATCTCCATATAGGAGGAGTCATTTTCCAAGTTGTGGAAAAGATAAATTTGCAGCGGGACTGGTCAGATCATGGTCTGTGGTGGGAGCAGAAGCAGCAGTGGCTCTTGCGGACTTCCTGGACTCTGGAGAAATATGGGATTCATGCAGATGCTCGCCTCATTTTCTCCCCCCAGCACAAGCCCCTGCGTCTGGGCCTTCCTAATGGGGTCACCCTTCGGCTCCGCGCGTGCTTCTCCAGCTCAGTCTTTCGCACGGTTCAGGGAATCTGCAGGGTCTTGAACATCCGCCATCCAGAGGAACTGTCTCTGTTACGGCCtgtggaggaaaaaaagaaaaagaaagataaggATTCTGCAGAGGACGAGTATGACCTCACAAATGTTCCCCTGACCTCAGTATCAGTGCCAACTCTTTACAATGGCATGCCTGCTCATTTCGCTGACTCTCCGAAAACTGAGTTTGTCTATAGGATGCTTTCTGTCTGCCAGCCTTCACCTCCTCCTGAGACCATTGCTAAACTCTACCGGCCGGCAAGCAAAGTGGacaaaacacacattcataGCAGGTGGCTGGATTCATCACGCTCACTCATGCAGCAGGGAATACAGGAGAACGACAAGCTGTGGCTTCGCTTCAAATACTACACCTTTCATGATGTGGAACCCAAGTATGATGCGGTGCGTATGACGCAGCTGTATGAACAGGCACGCTGGGCAATCCTGCTGGAGGACAATGACTGCACAGAGGAGGAGATGATGCTGTTCGGAGCCCTGCAGTACCACATAGGCAAGCTATCTCAGACACAGGAAGTAGGCTCATGCCAGGGCATGGAGGACCTGGATTCTGCCCTGAAGTCCTTAGAGGTCAAGATGGTAGGAGACAATAACAACTCTGATTTACTGAGTAACATGACTGCTCCAGAACTGAATGGATACCTGAAAATGTTTCGacCCAAAAGACTAACTCTGAGGGACTACAAACAGTACTGGTTTAAGTTTCAGGACACATCTATCTTCTATTACAAAAGTTTTGAGGACCGATACGGAGAGCCAATCCAGCAACTGAATCTGAAAGGCTGTGAGGTGGCTCCTGATGTAAATCTAGCAGGACAGAAATTCTGTATCAGACTCCTGATCCCAGTGCCGGAGGGCATGAATGAGGTCTATCTGCGATGTGAGAATGAAAAGCAATATGCAGAATGGATGGCTGCCTGTAAACTGGCCTCTAAAGGACTGACCCTGCTGGACAGCTCCTACCAGAGTGAGGTGAAGAACATCCAGATGTTTCTTTCCATGCAGCGCAGTAACTCGTCTTCCTCAACTCCACAGACTGACGACAGcatcaacacacagagccttgtTTCGCCTCGCtacaccaaaaaatacaaagtcAAGCAGTTAACCCCTCGTATCCTGGAGGCCTACCAGAACGTGGCTCAACTTTCTATGACGGCAGCAATTCTGAAGTTCCTCCAGATGTGGCAGTCCCTGCCTGACTTTGGCATTTCCTATTTCATGGTCAGGTTTAAGGGAAGCCGTAAAGATGAGGTCTTGGGTATTGCAAACAATCGCCTAATCCGAATTGACCTGGGAGTGGGGGATGTAGTGAAGACCTGGCGCTACAACCACATGAGACAGTGGAACGTCAACTGGGACATACGACAGGTGGCTATTGAATTTGATGGCAACATCAATATAGCCTTCGGTTGTGTAACTGCAGACTGTAAGGTAGTGCATGAGTACATTGGTGGCTACATCTTCATGTCAACACGCTCAAGACAGCCCAGTGACACCCTGAACGAAGAGCTTTTCCACAAACTCACTGGTGGTCATGAAGCTCTCTGACCGGCACAGGCTGGATGATCCTGAGCACTTATACTCCAGCAGGAGGACTAACAAAATCTTTgaaagtattagtattatttgtGGCTAGATCCTATgtctttaattatataaaaagttGTTTCAGCTTGATGATGGAAGTGGTGACATTCCTGAAAGGCTGCAGTGGATGTGGATGTTTATTCAAGACCAAGTAATATAAGTactgctgttttttgttttcagttgtaTTTTGTTATATTACAAAAGAGATGAGCAGAATAATACAGAAGTATTTAAACTGAAAATTACATAACATTTTGATGaaa

Function

GO: NA

KEGG:

id description
K17084 FERMT3, KIND3; kindlin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285817 lncRNA downstream 95520 39140107 ~ 39144431 (-) True G210607
TU285793 lncRNA downstream 158354 39076137 ~ 39081597 (-) True G210590
TU285794 lncRNA downstream 158354 39076137 ~ 39081597 (-) False G210590
TU285779 lncRNA downstream 216283 39022746 ~ 39023668 (-) True G210580
TU285774 lncRNA downstream 253536 38985708 ~ 38986415 (-) True G210576
TU286036 lncRNA upstream 128712 39381940 ~ 39452086 (-) True G210749
TU286034 lncRNA upstream 131648 39384876 ~ 39452086 (-) False G210749
TU286032 lncRNA upstream 194271 39447499 ~ 39452086 (-) False G210749
TU286035 lncRNA upstream 194271 39447499 ~ 39468863 (-) False G210749
TU286061 lncRNA upstream 209879 39463107 ~ 39469279 (-) False G210764
XM_022684070.1 mRNA downstream 4203 39221149 ~ 39235748 (-) True LOC103042155
XM_007246395.3 mRNA downstream 7520 39221149 ~ 39232431 (-) False LOC103042155
XM_007246396.3 mRNA downstream 21196 39215210 ~ 39218755 (-) True eif1ad
XM_015605091.2 mRNA downstream 92819 39144836 ~ 39147132 (-) True LOC103043921
XM_007246469.2 mRNA downstream 205914 39026145 ~ 39034037 (-) True LOC103037382
XM_007246388.3 mRNA upstream 25451 39278679 ~ 39315176 (-) True LOC103040115
XM_007246384.3 mRNA upstream 149318 39402546 ~ 39428096 (-) True LOC103039284
XM_007246383.3 mRNA upstream 176601 39429829 ~ 39436025 (-) True LOC103038965
XM_022684073.1 mRNA upstream 183448 39436676 ~ 39446995 (-) False LOC103038656
XM_022684072.1 mRNA upstream 183448 39436676 ~ 39446995 (-) False LOC103038656
TU285068 other downstream 2529208 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 4489745 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 4602652 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 4607633 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 4965358 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 274405 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 360490 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 393126 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 679910 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 1108030 40361258 ~ 40363237 (-) True G210991

Expression Profile