RNA id: XM_007246438.3


Basic Information

Item Value
RNA id XM_007246438.3
length 3368
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC103027906
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37558694 ~ 37625939 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCGCGCTCTGAACACCAGAAGAAACAACAAGCCTCGCAGCAGCAGTGAGACAGCGGGTCAGCGGCGGGGTTCACACCGCGCTGGAGATTTAAAACCGGACCGTGCTTTAAATACTGTTATCTGTTTAAGTTGTTAAAGGAAAATGTGGCTGTTCATTCGTCTTTGCTAGTGAAATAAGGCTTCTGCGCGGCCGCAGCGGCTCTCTGGAGCTCCCGTGGCTGGATGAATTGTCTCCACAATAAAAGCAGGGACCAGTGAAACTTCCAGCTGAGCGGAACAGCCATGAATTCAGACATCAACTATCAGGATGgGCCTGCATTCTCCCGTACAGAGGAGAGTCCAACAGAGGACGAAGAGCCCGTCCATTCCCCGTCCCGCATGCAGAGACAGTACGAGCGAATTGGAGGCAGAACCGGATCCTCGTTTTTTCAGACCTTAATTCATTTACTGAAAGGAAACATCGGCACTGGTCTGCTCGGCTTGCCTCTCGCTGTGAAGAATGCAGGGCTTGTGGTGGGTCCTCTGAGTCTCTTCGTGATGGGCATTGTGGCTGTGCATTGCATGCAGATTCTGGTGAAATGTTCCCACCATCTAAGTGCTAAGCTTGGGAAACCGTTCCTGACGTACGGGGATGCAGTAGAGTATGGAATGGAGAATGTGTCTTGGCTGAGGAATCATTCTCGTTGGGGAAGaCGATTGGTGAATATCTTCCTGATCATCACTCAGCTGGGCTTCTGCTGTGTATACTTTGTGTTCCTCAGTGACAACATCAAACAGGTGGTCGAGGCTGCAAACGGGACCACGGTGAACTGCGACACCAACCAGACTGCAGTGATTGTTCCCAGCTACGACTCCCGACTCTACATGCTCTTCATCCTCCCCTTCATCATTCTGCTGGTGTTCACCCGCAACCTCAAATTTCTGGCCCCTTTCTCTTTTGTGGCCAACATAGTCATGTGTGCCAGCCTGGTTCTCATCTACTACTTCTGCCTAACGCATATTCCAAATCCTATTGACCTCCCGAAGGTTGGAAGGCCCATTGACTACCCACTGTTCTTCGGGACAGCTATATTTGCCTTTGAAGGCATTGGTgtgGTTCTACCACTTGagaacaaaatgcaaaaacctCAGAGATTCAGTGCAGTCCTGTACCTTGGAATGGGCATCGTCACTTTTCTGTACATTTCCTTGGGCACCATTGGTTACATCTGCTTTGGAAGTCACATTGGGGGCAGCATTACCCTCAACTTACCAGACTGCTGGATGTACCAGTCAGTTAAGCTGCTCTACTCATTCGGGATCTACATCACGTACGCCCTGCAGTTTTACGTCCCAGCCGAGATCCTGATTCCTCAAGCTGTGGCACGGGTGGACCCCCGGTGGGAGCTGCTGGTGGACCTCAGCATCCGTGTGGGCCTCGTTATCTTAACATGTCTACTGGCCATACTGATTCCAGAGCTGGACCTGGTGATTTCCTTGGTGGGTTCAGTCAGCAGCAGCGCCCTCGCCCTCATCTTGCCACCACTTCTGCAAATCATCACCTTCCATAACGAGGGGCTGTCAAAATGGGCGGTGCTCAAGAACATCATCATCAGCCTTTTTGGCCTGGTGGGCTTCGTGGCTGGGACCTATATTTCCATTGTGGAGATCATCTCACGCAGCAAGTCCAAGCAGATTGACGGGTTCTTTCAGGTCATGTGACGACAGCCCTATTAAACAAAGGGTTTATAGACATCTAAAGCCATTCATTCACTCAAAAAAAGGCCatcaatttaaatttaattatactATGAGATTATTTCAGTCTAGAAAAATGACCTTGGCTGTTTTATAGTGGAACTACCGACCTCATGTGGCTCAGATTTGTCTATTTATTCCTCAGAGCTGGGTTATGGACTTATCACAGTTAGGacctgaattaaaaaaagagaaaaactagtcattaaatgctcttaaaaaatgttttatgtctttgattttatatgtttttaatttaaatgtttgttaattTCTTTTAGTTTACTGGTTTTAATATGCTAACTGgttttaacatgttaaaatgGTCAGAGCACAGTGTTACATAAACTCTTAATCAAATTCATTTTGCATTGATAAAAGCTCTTTTATTCCCTTGAGAACAGAAATACAGGTAATAATTAAAGTTCAgatagttttatttagtaatatGTATAGGGATTATCTGTATAATCTCACTACGGTTAAAGatggttttatgtttcttttttcaatttATGAATCGGTACAGATTTTTTAcacaatattcttttttttctctttgtttttacaaagtgggctttttatttactaaaggATTATTTGTCAATGCACAACAAAGTAAAATGTATgaagtactgttttttttcttggtagTACACCTAGACACGTTActtttagaattaaaaaatgtttacacttaaaaaaaacttttaatagtttaaaaactTAATAGGTTATTCAGGTTTTCTGGAACTAACTGGATCCTTCACACATTAAATGTGATACAAGGCTGTGTTTTTAAGATGAATCACAGATCAtagtcatttttttcagatttgccAAGCCTGATATATGGAGCAAATGATTTCACACCTCAGTTGGCAAAGAAATTCAGATGTGATTTGTCAGACTTATAGGCAAGatgttttaaaatgcaaaaaaaaacaaaaacaaaccatatataccaaaacattattttaggtTCTTTTGTGGGAGATGAAACAGTTGTATATATTTTGAACATCTCTCATAATGTATATTATGCTCACTAAAGAACAGTTGCGATTCATTATAAGGTTTCTTTtttagataatgttttttttttttttaagtttttgtttttggagttttttttttatcatgcatCACATTAGTAGATAGTGtgataagttattttattgaatttattaTGGGTGCCAAACAGAAGAGACCTTGATGTAAAAATTCTTGACATGTTCTGCTGTACTTCATGTTCATGCACTGCACTCATACTACACTTTGTTTTGCAGCtgtagaaatattttttttggtgagCCTTAACATACAGCATGTCCATCGATTGTAAATTTAAGTACaattacactgtaaatgtaaaatgtaaaatgttttttctcaTGACGGGGGCTCGATAGTGTATCATCAGTGTCAACAAGAGTGTAACACCATGAACAGTTGTGTATATTATTTTGATTCAGTGTGTGTCCACATGCTATTTAAAGCCAGaacggtttttttttttactgcatctgTATGTGTTCACATGCTGTCACCTACTGTAGGCTACGGTCTCCGAGTGATAAAAGTGTTCTGTGGAAatgcaaagtgaaataaaaagtgctttgaGATCTC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14209 SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285339 lncRNA downstream 235068 37323407 ~ 37323626 (-) True G210242
TU285331 lncRNA downstream 244078 37309378 ~ 37314616 (-) True G210235
TU285314 lncRNA downstream 256892 37299114 ~ 37301802 (-) True G210223
TU285279 lncRNA downstream 330082 37228261 ~ 37228612 (-) True G210197
TU285275 lncRNA downstream 391328 37165049 ~ 37167366 (-) False LOC103033395
TU285424 lncRNA upstream 900 37626839 ~ 37629906 (-) True G210314
TU285428 lncRNA upstream 6453 37632392 ~ 37632695 (-) True G210317
TU285455 lncRNA upstream 20253 37646192 ~ 37646869 (-) True G210339
TU285470 lncRNA upstream 51517 37677456 ~ 37683502 (-) True G210347
TU285493 lncRNA upstream 199280 37825219 ~ 37825820 (-) True G210365
XM_007246442.3 mRNA downstream 137544 37414592 ~ 37421150 (-) True gm2a
XM_007246443.3 mRNA downstream 151265 37392070 ~ 37407429 (-) True ccdc69
XM_022684050.1 mRNA downstream 272964 37280841 ~ 37285730 (-) True LOC103038966
XM_022684049.1 mRNA downstream 340403 37206239 ~ 37218291 (-) True LOC103033714
XM_007246456.3 mRNA downstream 354309 37165034 ~ 37204385 (-) True LOC103033395
XM_007246434.3 mRNA upstream 68114 37694053 ~ 37776716 (-) False glra1
XM_007246433.3 mRNA upstream 68114 37694053 ~ 37776716 (-) True glra1
XM_007246428.3 mRNA upstream 418082 38044021 ~ 38048482 (-) True thoc3
XM_022684055.1 mRNA upstream 424299 38050238 ~ 38075468 (-) True LOC103024433
XM_022684058.1 mRNA upstream 450190 38076129 ~ 38079211 (-) True LOC103022549
TU285068 other downstream 847951 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2808488 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2921395 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2926376 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 3284101 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 1901694 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 1987779 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2020415 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 2307199 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 2735319 40361258 ~ 40363237 (-) True G210991

Expression Profile