RNA id: XM_007246443.3


Basic Information

Item Value
RNA id XM_007246443.3
length 2341
RNA type mRNA
GC content 0.46
exon number 9
gene id ccdc69
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37392070 ~ 37407429 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACAACATCCAATCAAAGGAAGTTTAAAAGACCTGTTTTAAAGGACTGCCTGGTCTCAGCGCTGTCTTCTGTTTTGTAATTTGCTTTGTTTTCACCATGTGAAACTGAAAATCCCTTAGTCCGCTCGAGTTTCCGTGTTTCGGTAGGATACAGGTTAAAGACGGGCAGCGCGCGTTCCCGCCCCTCGGTAACAGTCAGCGGCGCTGCGGGTTCACAGACTTCAGGCTGTGAGTGTTTCAGGGCTTCAGTATCCTGAGCTGAAGATCTTCTCACACCACTTtcctgaaggagagagagagagagagggcaggaAGAAAGCATGGGCTGCCACCACAGCAAGCCGTGTCTCCACGCCTGTCAGAGGAAGCAGAAGaaaaacaaagcaaaatgtgAGACCCATCAAAAGGAGATCAGCGCTCAGGATGGAAGTGGAAAGCTCCCTCTGCAGGAGCTGAGCACCAGCCCAGAGAAGCTGCTGGAGAGTTATGAACAGCAGCTGAAAGTTCTGCATAAACTTTTGTCAGCTTCTGGTACAGAGCGGGAGCAGCTCCTGAAGGACCATCAGCACGGAGAGATCTGCACACTTGTCCACAGCATCACTGAGAAGGTGAAGAGCGAAGTTACGGCTGAGCTCGCTGCTCTTCACGAGAAGCAGGCAAAGATCTCCTCAGAGCAGCACCACAAAGAAACAGAAGAGATGCGTCGAGTACACAGTGAAGAGAAGCACGCATTAAAGGAGGCACACACAGCAGCTGAAGCCGCTCTGAAGGGGCAGATTGAAGAACTGACATCAGACTTGAAACTGTTCACCATGTTGAAACAGAGAGTGAAGGAGTCCACACTGAACAGGGACCTTCGGAGAAACATTGAGactcATGGCAGCCCTGGTGAATTCTGGGAGCAGGAGCAAGAGAGTCTGCTAATTGTCATAGAGATGAAGAGCGAGCGTTTACAGGAGCAGGGAAGCAAGCTGCGGCAGATGGAGGCGCTGGTTGAGAAGAACCTTTCTCTGGAGGACCAGGTTTTGCAGGTTCTACAGCAGAACGAGGACCTGAGAGTTCGGATAGAGAACTATCAAACACTAATACACCAACTTTCCAAGGAGCAGAATGAGACACAGGAGGCTCTGGAGAAGCAGACCCTGCAGATGCATAAACTCAATCAGGAAAAAGAGGAGCTGCTTTTTAAACTCCTCCACAGCCAGGACTCTCGCTCCTCGTTTCACATGCCGGCCCTTATTCCTGCGGAAGTGTCCCACAGCTAGCCTGACTGGCCTTCTCTCAGACTGGAGTGGACTTTACTCACCAAAGCCTTGCCATTGACTCCAGTGTTTTGTTACTTGTGCCTCAATTTTTACCTTGTTGCTGCTGTTGATTTCTATACAAGCAACTGTTTTCAAGAAGCAGTGGACATTACGCCTCGTCGAAACTGACTTACAGCATCCGTTTTACTGTCAGTCTTTGGAAAACTGATGTAAtggttgtatttgtattttacgttttggttttatttaattttattcaatgCTCTGATGCATTTTGGAATAGTCATAATATACCAATAATGCTGTATAGATATAATGGTAATCTGCTACTTTGCTGGTGATTTTAGGCCGGCTTGTTTATAGTCTTTAGCATTATGCATATGATGTTGTCAAATGACAGAGGTTCTCTTTATTTCCCCCCAAAGACAATCAgccatttttcctttttgccGTGCAACACTGTAGCAGGCAAAAGCACTTGTACGTGTAGTTTAAAAGCAATAgggatatttttttccagatgcaCTGGCACTTTTGCAGCAGTAtttttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatgtatgaatgAGGATGATTGTGGGACTTGTTGGTTTAGAACTGTATGTTTGCATGCTTACACCTTTGGATGTGTTCATGGAAGTGTCGTTTCTGAGCACATGGATCGTTCTGGTAGTTGAGACATGACTGGTGACTCACTGGAGTGGaatcagtgttttgttatttaGGCAAATATATGAATGTTTGCTGGGAGAGAACCTCATATATTAAGAAGTGTGAGTGCAGAGCAAGTTTGGACAGATGCTGGAGGACTCCTTTACTGGTCGTTGGTCAATGGTGCAGAACAATGTAGAGTAGTTAGTGCTCAAAATGGCTGTTTTTGTACTTCAATTGCATTTGAGTTTTTCtctgatttctttttctttctttcatactCGTGTTCCCATGTGCCTGTTCTGTTGTCCATTTTCTTACCTCTGAACCAGTCCTTGTTGCAATGGGCATCCCAAAGAAAGGTGAACCTCAATAAAACTGCATCTGTCCAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285339 lncRNA downstream 68444 37323407 ~ 37323626 (-) True G210242
TU285331 lncRNA downstream 77454 37309378 ~ 37314616 (-) True G210235
TU285314 lncRNA downstream 90268 37299114 ~ 37301802 (-) True G210223
TU285279 lncRNA downstream 163458 37228261 ~ 37228612 (-) True G210197
TU285275 lncRNA downstream 224704 37165049 ~ 37167366 (-) False LOC103033395
TU285416 lncRNA upstream 178157 37585586 ~ 37586656 (-) True G210306
TU285424 lncRNA upstream 219410 37626839 ~ 37629906 (-) True G210314
TU285428 lncRNA upstream 224963 37632392 ~ 37632695 (-) True G210317
TU285455 lncRNA upstream 238763 37646192 ~ 37646869 (-) True G210339
TU285470 lncRNA upstream 270027 37677456 ~ 37683502 (-) True G210347
XM_022684050.1 mRNA downstream 106340 37280841 ~ 37285730 (-) True LOC103038966
XM_022684049.1 mRNA downstream 173779 37206239 ~ 37218291 (-) True LOC103033714
XM_007246456.3 mRNA downstream 187685 37165034 ~ 37204385 (-) True LOC103033395
XM_022684047.1 mRNA downstream 285613 37100295 ~ 37106457 (-) False LOC111195788
XM_022684048.1 mRNA downstream 287010 37100295 ~ 37105060 (-) True LOC111195788
XM_007246442.3 mRNA upstream 7163 37414592 ~ 37421150 (-) True gm2a
XM_007246438.3 mRNA upstream 151265 37558694 ~ 37625939 (-) True LOC103027906
XM_007246434.3 mRNA upstream 286624 37694053 ~ 37776716 (-) False glra1
XM_007246433.3 mRNA upstream 286624 37694053 ~ 37776716 (-) True glra1
XM_007246428.3 mRNA upstream 636592 38044021 ~ 38048482 (-) True thoc3
TU285068 other downstream 681327 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2641864 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2754771 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2759752 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 3117477 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2120204 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2206289 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2238925 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 2525709 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 2953829 40361258 ~ 40363237 (-) True G210991

Expression Profile