RNA id: XM_007246459.3



Basic Information


Item Value
RNA id XM_007246459.3
length 1093
RNA type mRNA
GC content 0.39
exon number 8
gene id polr2g
representative True

Chromosome Information


Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37083976 ~ 37086979 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CGGGGGTACCCGGATGTGAGGCAGATGTTAGCTTTGTTCGGCGGCGCTAACGCTTTAAGCGCAGGACGTGTTCCAGTCATTCAGCGCggtttattaataatacaagAATAAATACATCCAGATCAGAGATGTTTTACCATatttCTCTGGAACATGAAATCCTTCTTCATCCTCGATACTTCGGTCCAAACCTCTTGAACACAGTCAAACAGAAGCTCTTCACAGAGGTGGAAGGCACATGTACAGGAAAGTATGGGTTTGTCATCGCAGTGACCACAATTGATAACATAGGGGCAGGTGTTATACAGCCAGGACGAGGGTTTGTGCTGTACCCTGTCAAATACAAGGCCATCGTATTCCGGCCCTTCAAAGGGGAAGTGGTGGATGCTGTTGTCACTCAGGTTAACAAGGTTGGATTGTTTACAGAAATCGGGCCAAtgtcttgttttatttcacGCCATTCTATACCCTCAGAAATGGAATTTGACCCAAACTCTAATCCCCCCTGCTACAAGACAGTGGATGAGGATATTGTTATCCAACAAGATGATGAAATCCGATTGAAGATTGTGGGTACTCGAGTGGACAAGAACGATATTTTTGCCATTGGCTCCCTCATGGATGATTACCTGGGTCTTGTGAGCTGAATGATCTCTGAAATGATCCAGAGGACTTTTACATTCTTGgacatttttttgtacataGTTCAATATACAGTGTAGAATCTAGAATACAAATGTTcctgtgatttattttttccccacagTAGTCTATGCTAAATTGTActcttttgtttattaatttgctcaTGATAGTTATAAGAGTATTCCTTCCCTGTGTATTTGCTTTGGCCATATTTTACACAATTGGTATCTCCAATGTTACACAGAAATGAATGTTCAATTTATGTGCgttttttaatcattataatCAGTCTATATaatgtcacacaaaaaaaatctgatcaaaCCAGATTAAGAACTTTGTGTCCCAGCCAAAGACATTAAACCAGTTTGATCCAGCCAGCTTTACTCAGAATTACCAGGGAAAactgtatataattttttttataaaaagaaaatctcaAGAAAAA

Function


GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03015 RPB7, POLR2G; DNA-directed RNA polymerase II subunit RPB7

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU285146 lncRNA downstream 212032 36871579 ~ 36871944 (-) True G210120
TU285132 lncRNA downstream 261870 36815671 ~ 36822106 (-) True G210107
TU285129 lncRNA downstream 273492 36809311 ~ 36810484 (-) False c24h12orf73
TU285135 lncRNA downstream 278524 36805131 ~ 36805452 (-) True G210110
TU285088 lncRNA downstream 312979 36769669 ~ 36770997 (-) True G210076
TU285245 lncRNA upstream 20721 37107700 ~ 37108089 (-) True G210169
TU285249 lncRNA upstream 40715 37127694 ~ 37128205 (-) True G210173
TU285275 lncRNA upstream 78070 37165049 ~ 37167366 (-) False LOC103033395
TU285279 lncRNA upstream 141282 37228261 ~ 37228612 (-) True G210197
TU285314 lncRNA upstream 212135 37299114 ~ 37301802 (-) True G210223
XM_015605100.2 mRNA downstream 1770 37072586 ~ 37082206 (-) True eef1g
XM_022684366.1 mRNA downstream 45245 37003908 ~ 37038731 (-) True LOC103034997
XM_022684046.1 mRNA downstream 80341 36951881 ~ 37003635 (-) False LOC103039285
XM_022684044.1 mRNA downstream 83659 36951881 ~ 37000317 (-) True LOC103039285
XM_022684045.1 mRNA downstream 108419 36951881 ~ 36975557 (-) False LOC103039285
XM_022684047.1 mRNA upstream 13316 37100295 ~ 37106457 (-) False LOC111195788
XM_022684048.1 mRNA upstream 13316 37100295 ~ 37105060 (-) True LOC111195788
XM_007246456.3 mRNA upstream 78055 37165034 ~ 37204385 (-) True LOC103033395
XM_022684049.1 mRNA upstream 119260 37206239 ~ 37218291 (-) True LOC103033714
XM_022684050.1 mRNA upstream 193862 37280841 ~ 37285730 (-) True LOC103038966
TU285068 other downstream 373233 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2333770 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2446677 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2451658 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2809383 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2440654 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2526739 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2559375 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 2846159 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3274279 40361258 ~ 40363237 (-) True G210991

Expression Profile