RNA id: XM_007252849.3


Basic Information

Item Value
RNA id XM_007252849.3
length 2713
RNA type mRNA
GC content 0.50
exon number 19
gene id dnm1l
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40687792 ~ 40704331 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGTGCGCAGTTGGTTCCCGGGCCGGGCTGTTAAATGGTGGCACCGTGAGGGACATTGGATGACTTTGTGCTGTTTTTAGCCGTTCTACAGTAGCGACTCCATTCATTTAGACAGGCAGCGGTCGCCTGAACCATGGAGGCTCTTATTCCTGTTATTAACAAGCTGCAGGACGTGTTTAACACAGTGGGCGCGGACATTATCCAGCTGCCGCAGATCGCAGTGGTGGGAACGCAGAGCAGTGGGAAAAGCTCTGTTTTGGAGAGTCTGGTGGGCCGGGACCTCCTGCCCCGTGGGACAGGCATCGTCACCCGCAGACCGCTCATCCTGCAGCTGGTGCACGTAGACCCAGAGGACCGCAGAAAGACGAGTGATGAGAACGGTGTGGACGGTGAGGAATGGGGCAAATTCTTACACACCAAAAACAAGatctacacagattttgaTGAAATCAGACAAGAAATTGAAGCTGAAACAGAAAGAGTTTCTGGCAACAACAAGGGCATTAGCGATGAGCCCATCCACTTAAAGATCTTCTCCCCTCATGTGGTTAACCTCACTCTGGTGGATCTGCCTGGTATCACCAAGGTTCCTGTTGGTGACCAGCCCAAAGACATTGAGATCCAGATTCGTGAGTTGATCCTGAAGTACATTAGCAACCCTAACTGCATTATCCTGGCAGTCACAGCTGCCAACACAGATATGGCCACCTCTGAGGCCCTTAAAGTGGCCCGGGAAGTCGACCCTGACGGCCGAAGGACGTTGGCTGTAGTGACAAAGCTGGACCTGATGGACGCTGGAACAGATGCGATGGATGTGCTCATGGGCCGAGTCATTCCTGTCAAACTGGGACTCATAGGAGTTGTCAACAGGAGTCAGCTAGACATCAACACCAAGAAATCCGTTGCTGATGCCATTCGTGATGAGTATGCCTTCCTCCAGAAGAAGTATCCTTCCTTAGCCAACAGAAACGGAACCAAATACTTGGCCAGAACGTTGAACAGGTTGTTAATGCACCACATCCGGGACTGCCTTCCAGAACTGAAGACCCGTATCAATGTTCTAGCTGCTCAGTACCAATCTCTACTCAGCAGCTATGGAGAGCCTGTTGATGACAAAAGCGCTACTCTTCTGCAACTCATAACCAAGTTTGCTGCTGAGTACTGCAATACTATAGAGGGAACAGCCAAATACATAGAGACAGCTGAACTGTGTGGCGGTGCAAGAATTTGCTATATTTTCCATGAGACGTTTGGTAGGACGCTGGAATCAGTAGACCCCCTCGGTGGGCTCACAACCATAGATGTTCTCACAGCTATCAGAAATGCTACGGGTCCACGTCCTGCTCTGTTTGTGCCAGAGGTGTCGTTTGAGCTGCTGGTAAAGAGGCAGGTGAAGCGCCTAGAGGAGCCCAGTCTCCGCTGTGTGGAGTTGGTGCACGAGGAGATGCAGAGGATtattcagcactgcagtaactACAGCACCCAGGAATTACTGAGGTTTCCAAAGCTACACGATGCCATAGTTGAAGTGGTTACATCTCTCCTGAGAAAGCGTCTTCCTGTTACTAATGAGATGGTTCATAATTTGGTGGCTATTGAGTTGGCGTACATCAACACAAAGCACCCAGATTTCGCAGATGCTTGTGGACTCATGAACAACAATATTGAGGAACAGAGGCGGAACCGAATGAGGGAACTTCCTTCAGCGGTACCACGTGATAAGtctCTGAAGGGTCCCGGTGGGCAATCTCTGTCCCCCAGTGATCAGCCCCAGGCTGATGGTGATGCCCTCAAGgcgGTAGGCGCACAGGGGGATCAGGAAGCAGGAACAGGGAACTGGAGGGGGATGCTGAAGAAAGGAGAGGAAGGCCAGCCAGAAGATAAGTTTAAACAGCAGGGTCCTCTACCAGCCAGCCCACAGAAAGGTCATGCAGTTAACCTGCTTGATGTGCCTGTCCCGGTTGCCAGGAAACTCTCTGCTCGTGAGCAGAGAGACTGTGAGGTTATTGAGAGGCTCATCAAGTCCTATTTCCTCATCGTGCGCAAGAACATCCAGGACAGTGTGCCAAAAGCAGTGATGCACTTCTTGGTAAACCATGTGAAGGACAGTCTGCAGAGTGAGCTGGTAGGACAGCTGTATAAATCAGCACTGCTGGACGACTTGTTGACTGAGTCGGAGGACATGGCCCAGCGCCGCAATGAGGCTGCAGATATGCTCAAGGCCTTGCAGAAAGCCAGTCAGGTTATTGCTGAGATCCGGGAAACACACCTGTGGTGAGGGTCCCTGCGTGCTGCACAGCTCCCCCATCGCCCTGCCCACTGTCTGCGCTCAGTCCTGCCTCGCAGACCTCTCAGACAGCCAACTTGAAAATGCACTGGTGTCAGTTTGTGTGtgaatatatagttttattatgtTACATGCCGTGGACTCTCATTGAAGTACACTGAGGGCAGCACATATCATCCTGTCACACCCGCACACCGTCCTCTAGAGTAGCGTCTCAGAAATCTCCAGTATATTCAGTATACAACCACGTTAGCCTCATTTCTGTGTGCGGCCTACCAAGCGATGTGTGTCCCAGATGTAGCTTCAATTAAAGGTAGTGATGTAAAAAGAGCTGCTGAATTCTGTGTTTCCTGGGTGTCTGGTTTGATGAAAAGAATGTGGAAGATGGATGTTGCttccattaataaaaaaatattttactgctA

Function

GO:

id name namespace
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0000266 mitochondrial fission biological_process
GO:0005777 peroxisome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651829.1 lncRNA downstream 35746 40651665 ~ 40652046 (-) True LOC111195798
TU286573 lncRNA downstream 76072 40611097 ~ 40611720 (-) True G211085
TU286530 lncRNA downstream 120615 40566889 ~ 40567177 (-) True G211058
XR_002651817.1 lncRNA downstream 135097 40551912 ~ 40552695 (-) True LOC111195793
XR_002651863.1 lncRNA downstream 136013 40550281 ~ 40551779 (-) True LOC103026547
TU286653 lncRNA upstream 11199 40715530 ~ 40718202 (-) True G211140
TU286654 lncRNA upstream 13989 40718320 ~ 40726184 (-) True G211141
TU286793 lncRNA upstream 186483 40890814 ~ 40911636 (-) True G211242
TU286833 lncRNA upstream 454899 41159230 ~ 41219443 (-) False LOC103035761
TU286977 lncRNA upstream 889041 41593372 ~ 41595965 (-) False LOC103022682
XM_015606785.2 mRNA downstream 97324 40584365 ~ 40590468 (-) True LOC103027945
XM_007252841.3 mRNA downstream 104839 40570582 ~ 40582953 (-) True LOC103028575
XM_007252834.3 mRNA downstream 117644 40558684 ~ 40570148 (-) True LOC103026726
XM_007252847.3 mRNA upstream 798 40705129 ~ 40710254 (-) True dnajb9
XM_007252853.3 mRNA upstream 62722 40767053 ~ 40787591 (-) True LOC103032053
XM_007252854.3 mRNA upstream 62722 40767053 ~ 40786574 (-) False LOC103032053
XM_022684144.1 mRNA upstream 91206 40795537 ~ 40870630 (-) True LOC103031733
XM_007252857.3 mRNA upstream 187200 40891531 ~ 40896561 (-) True adal
TU286524 other downstream 123964 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 309439 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 324555 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 747745 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 891851 39646354 ~ 39795941 (-) False atp8a1
TU286910 other upstream 602615 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1500805 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 1577798 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 2058870 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 2299074 43003405 ~ 43025465 (-) True G211912

Expression Profile