RNA id: XM_007252853.3


Basic Information

Item Value
RNA id XM_007252853.3
length 4456
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC103032053
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40767053 ~ 40787591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCACTTTCACCTTCCCTTCTTCCGTGAGGGTTAAAATGTGTTGGTGTGTCGCCGCGGTGAAGCTGCCTGTCTCTGCCTGGCTGAGAGATGCCATTAAAGGCTGGAGGGTCTCCATCTGACCGTGCTGGAGATGGAAATGGCGCGTTTGGCCGCAGGCGGGCTGTGGGGGCGCTTTCTGCTCTGCGTGCGTTCACGTTCATACACTCCGTCCTGCTTTAATGCACAGCGCCATATGACAACAGATACGGGGGTTTATTTATACAAGTTGGGGTCCTGTTTCCTAAAACGTAGTTAGTGTGTAGTAGTGCTCTTCTTGAATAAAACAGCAGATTGCGCGGTGTTGGAGCTATTATAGTGAGCTATTATAAACAGCTGAAtttaggagagagagagatactggaGTAGCTTAACagttaatgtattattttctattaagcttttagcttttctttcttgtgtttttgtttgttttgctgtagTTAAGTTTATTAAGGCAGATGCGGCTGAAATGCTGAAATGAACACCAGCTGTGTGTGGTAATATGACAGGTCACAGGtacttagctaggttagctaatagcTAGTTAACGATAAAACACCGCAGCTCGGATGTGTTTGTCGTTggaacaggtaaaaaaaaactgatttaattcGTTGGTAAATGTGCGTATGCGTTTCCACGTATGAATAAGCGAGATCAAGTGTTCCTGTGCTCAGGCAAGGCTGAGCTAATTGGAGGCTAATCCTTTGCCCCCGGGGGGCGAGCCGAGAGCCCGGAGCGAGACTTCATCTCTCCCAGCCCCTGTCCTCTGTTATTCGGGGAGGAAACGCCTGGCTTCGGTGCGCGCTCTCTCTCACGCCTCAGCCAACAACAAAAAGAAGGAGCTAGAAATAGAAAACACGCGAGGAAAAGACGAGGGGATCGATCTCATGTTTTAAAAGAGGAGAAGGAAGATACCACAGCAGCGATGTCTTCCTCCAAGGAGGGAAGAAGCATGTCTCGTCTCTCTCTGACCCGCTCTCCGGTGTCTCCTCTGGCCGCTCAGGGGATCCCTCTCCCAGCTCAGCTGACTAAAGCCAACGCTCCAGTGCACATTGACGTAGGAGGACACATGTACACCAGCAGCCTGGCCACACTCACCAAGTACCCCGACTCAAGAATAAGTCGGCTGTTCAACGGCACAGAGCCGATCGTGTTGGACAGTCTGAAGCAGCACTATTTCATCGACAGGGATGGAGAGATATTCCGTTACATTCTGAGCTACCTCCGGACCAGCAAGCTGCTTCTGCCTGAAGACTTCAAGGAGTTCCAGCTGCTGTACGAGGAGGCCCGCTACTACCAGCTGAGCCCCATGGTGAAGGAGCTGGAGCGCTGGAAGCAGGAGCGTGAGCAGCGGCGGACATCACAGCCCTGCGAGTGTCTGGTGGTGCGTGTGACCCCTGACCTGGGTGAGCGGATCGCTCTGAGTGGCGATAAGGCCCTCATCGAGGAGATCTTCCCTGAGACAGGAGATGTCATGTGTAACTCAGTCAACGCCGGCTGGAACCAGGACCCCACTCACGTCATCCGCTTCCCACTCAATGGATACTGCAGACTCAACTCCGTACAGGTGCTGGAGAGATTGTTCCAGAAAGGCTTTGCCATGGTGGCATCATGTGGCGGGGGAGTGGACTCGTCTCAGTTCAGCGAGTACATCCTGAGTCGTGAGGACAGACGCTGTCAGACCATTCACACACCCATCCGGATAAAGCAGGAGCCGCTGGACTAGCAAGTCGAGCAGAAACTCCTCAGACTGACCCTCAGCGGTGAGAGGCCGGCAGTGGACAGTAAGGAGATGGCAAAATGGATCAAGTGTGTGCCTCTCTGCTGGACTTCTTGGACTATTTAGGAGTTTGTGAAGATGGAACTCTTAATctagataataaaaaaactcttcaGAGACTGAATTGACAGATGtcttgatgaaaaaaaaagaacaaaaactgacaaaaagaaGAAGTCTTGGCTTGGAGGAAAAACAGCATTCTGTATATTTTGGTCTTCCACATACCAGAGCATACTCTTCCGGCATTTACTTAGTCATGACCTCATCTGTTTTAATGCAGAAATCAATCATTTCTGCATACCAATCGCCCCTCGCCTCAGCACCACCATTGGGAAATATTCTGATCTCATGTTCCAGTCTCTTTCTGTAAATcagttctttgtgtgtgtgtgtgtgagattcaCCATATATGAAGGATGTGAGAACAGCACTGAGAACAAAGGCATTTGATTGCGAGTGCAGAGTGGAGGGGAGTTGGCTGCCTGGACTGGCCGCAGGCTGCATGGCCTGAGCGTTAGGGCTACTAATGCATCCAGAGCCGCGGAGAGGGGCTGGCTGTTAGAGCACAGCCACAGGGAGACCTGTGCTTATTTCAGGAGAGCTTTTCCAATCTTCAGGAACACAGAGAGCCACCACAAAAACAATGATGgctggtagtttttttttattttttatttaagtcagCAACAATACTGTCATCCAGTCTCAGATAAGTTAATATCTCCACATAAATATTTCGAATTTACACGCCTGTATAACTATGGTGGCTGCATTTTACTGAAGGGTGGCATTCCTAAGGTTAAAGCAggattctttttctttttaagaaaaataaaaaaaaacttttccaggACACGCAGCTTAACTTAATATTTCCAGCTTATGCTAGGAACTGTTACACAGCTGACAAtgtgtgtaacaatgtgtgagACACATGTTAAACAGTGTCAAATTCACCAACAAAAGTATTCATTTATTGAGCAGTTATTTACGTACCCATCTATGACATTACACCCTGTTAAACACGGTGCAGTGTAACAGAACTGTCTCCATCAAAACTAATAATGCATCAGACAAAAATCTAAGTTTAATCTTAACTTAGTTTAAGATTAACTTtcttcatattcataacatatcctgtttttttttagaagtttatttttattttaaaatagtttccaTGAAAACACAATTCAGTCGGCTTATTCTTATTTCAAGTCATAGTTTGTATCATTAGAGGTTGGGTGTAGGAGTCCTATCATAAACCTTGTGAAAATTGTTAGCCTTCAGCAAAGTGTTAGCCATATGATTAGAAACCTCTAATCAAGAAATATCTGCTTGTGAAATGATGGTGGGTGACTTATTTATTACCTTTTAAATCTGAGGTTGCTGTGAAGTGTTCTTTTGTTGATGCTATAAACAATGAAAGAAGTGCTGGATTGGAACAATGGTTCTTCTATGGTATCGCTTAAATAACCCTTTGAAGTGGATTAAATTCAAACTCATCTGCAGAACACTAAAGAACATTAAATCATATTGATAAAAGGTCAAATAAAGCAAGCAAGCAGTGCTTCCTGGATCCCACAGGAAGCTCTTTTCATGAAGGCAGCATTAGGTAGGGGAAATGAGAGATTACTCAGATTAATGAACACAGGGCTGCGATACTGCTCTTCCTGCATGGTCGGAGTTGCTGGCGGAGCTGGTCCTACCAGAGCAGAAGGGGGCTTAGTGTGCTCCTTGAGGGGCCCATCAGGGCTGAGGCGGAAGGGCACGGGTCAGAGAGAAGCTAGACTCCTCCCCACACTGCCCCAGGAGCTGAGGTCACTTTCCCACAATCCTTTTACTCACCCGGACCCCCGAGCCAAACAAGCCCAGTCATAGGGAGGAGAGCGTACGGCGCGCGGGCAGCTGGAGGAAGATGGAAAGGTTACTTAGGTGGCTGGGAAACAGCGAGCGATGCTTAATGTGTTGtaaaaatgcacatttaatAGCCCCAGTATTCTTTAGGCTCTGTAACCTCATTAAGAGGGCAGAGGTCACAGAGATGCCACCATGTTCTACAAGATCAGGCGCTGAGTGTTGTCTTACTAAGACAGTATGAACGTGCCGAGACCTTATTCTTCACGCTATCCACTGAAAGTGATGCTCTGGTTCGCCCTGACCCTCATGCAGTGGGTGTTGTGAGGGGGCTTGTTGCAAATTTTACCATCACAGTTATAGCagataatacactgtaaaaacatgtCGTTTGTGTTGGAGTTTTTGGTATTTCATCAAACGATAAAGAAAATGCTTCCACCAGCCATGCAACTGGATTTCAGACCACAGACACAGAAATGGATCTCATACATACACTGAGAACTTCAAGAAAGGACTTCGGTATGGACCATAAAGAACTaagaaaaatcttaatttaaataCTGTTCTAATGGAtgttgtgtcaaaatgtataatattacaGTAAGGTGCAAATGTtaactattatttaaataaagctcattacgtttctttttttgttcataCATAATTATTAAGAAACATTGTAGTAGTGCAGGCATGTGTTCACTATCCTTTTGTAATTGGTGTTGATCAAATGgacttttaataaattgttgGACTTTTTTTCCTAA

Function

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0051260 protein homooligomerization biological_process
GO:0044335 canonical Wnt signaling pathway involved in neural crest cell differentiation biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286654 lncRNA downstream 40869 40718320 ~ 40726184 (-) True G211141
TU286653 lncRNA downstream 48851 40715530 ~ 40718202 (-) True G211140
TU286626 lncRNA downstream 49940 40629372 ~ 40717113 (-) True G211119
XR_002651829.1 lncRNA downstream 115007 40651665 ~ 40652046 (-) True LOC111195798
TU286573 lncRNA downstream 155333 40611097 ~ 40611720 (-) True G211085
TU286793 lncRNA upstream 103223 40890814 ~ 40911636 (-) True G211242
TU286833 lncRNA upstream 371639 41159230 ~ 41219443 (-) False LOC103035761
TU286977 lncRNA upstream 805781 41593372 ~ 41595965 (-) False LOC103022682
TU287067 lncRNA upstream 1066207 41853798 ~ 41860053 (-) False G211450
TU287065 lncRNA upstream 1071272 41858863 ~ 41865986 (-) True G211450
XM_007252847.3 mRNA downstream 56799 40705129 ~ 40710254 (-) True dnajb9
XM_007252851.3 mRNA downstream 62722 40687792 ~ 40704331 (-) False dnm1l
XM_007252849.3 mRNA downstream 62722 40687792 ~ 40704331 (-) False dnm1l
XM_007252850.3 mRNA downstream 62722 40687792 ~ 40704331 (-) False dnm1l
XM_007252848.3 mRNA downstream 62722 40687792 ~ 40704331 (-) True dnm1l
XM_022684144.1 mRNA upstream 7946 40795537 ~ 40870630 (-) True LOC103031733
XM_007252857.3 mRNA upstream 103940 40891531 ~ 40896561 (-) True adal
XM_007252858.2 mRNA upstream 109301 40896892 ~ 40902164 (-) True LOC103033419
XM_007252859.3 mRNA upstream 125492 40913083 ~ 40945688 (-) True LOC103033740
XM_007252860.3 mRNA upstream 125492 40913083 ~ 40945687 (-) False LOC103033740
TU286524 other downstream 203225 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 388700 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 403816 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 827006 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 971112 39646354 ~ 39795941 (-) False atp8a1
TU286910 other upstream 519355 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1417545 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 1494538 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 1975610 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 2215814 43003405 ~ 43025465 (-) True G211912

Expression Profile