RNA id: XM_007252889.2


Basic Information

Item Value
RNA id XM_007252889.2
length 2555
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC103043124
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41637335 ~ 41652545 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACTATGTAAAGGTTTTAACTGGCTCTACTGAACCTGCTTTGACTACTTTACAtccattcatgcagaggaacattCCCATCAGGCACTGACTGCTGAggaacttttacattttaaaattcatttttaaacttttgattgagctttttttgtgtaattaaactgaaaatcatgaaaaaaatcttCAGTTTGGTCAACCTCACAAAGAACAGGGAAGCCAAGGGTGCTGTAACATCTCTACATATAAAGcagCAAATCGAGGTCCCACAGCCACCACACGAGTTTAAAGACAGGCTCACTAAAACAGGCCATCGCTCTctgtcctgctctctctctcgctcttctacTGACAATCTCAGCTCAGAAAGCACAGACGAGGAGATTTCTCCTCAAAACAAGGAGCAGAAGAACTCTAAAGGAAGCAATGACTTCTGCATTAGGAGCATTCGTCAGGCTGCTTTTGGACGCAGAGAGATAGAAATGGCAGAACAAGAGATGCCAGCCCTGATGATGCTGAGAAAAGCGACCCAGGGAGAGAAGCCATTAGCTGGTGCTAAGATAGTGGGCTGTACCCACATCACTGCACACACGGCTGTGCTGATAGAGACTCTGTCGTTGCTGGGTGCTCAGTGTAGATGGACAGCTTGTAACATCTACTCTATCCAGAATGAAGTGGCTGCAGCTCTTGCAGAAGGAGGAGTTCCAGTGTTTGCATGGAAAGGAGAGTCAGAGGAAGATTACTTCTGGTGTATAGATAAATGTGTTAATGCAGAAGGCTGGGAGCCAAACCTGATTCTTGATGATGGAGGAGATCTGACACACTGGATCTATAGGAAATACCCTCAGCTGTTTGAGAATATTAAAGGCATTGTTGAGGAAAGTGTTTCTGGAGTTCACAGgttaTACCAGCTGTATAAAGCTGGTAAGCTCTGTAGTCCAGCAATAAATGTGAATGAgtcagtgataaaacagaagtttgaCAATTTTTACTGCTGTAAGGAGTCTGTCCTGGACGGgcTGAAAAGAACCACTGATGTAACTCTGAGTGGGAAGCAGGTGGTTGTTTGTGGTTATGGAGAGgtGGGGAAAGGCTGCTGTGCTGCACTAAAAGGGTTGGGAGCAATTGTGTATGTGACAGAAATTGACCCTATTTGTGCTCTACAGGCCTGCATGGAAGGGTTGCAACTTGCCAGACTGAATGATGTCATAAAGATGGTAGACATTGTCATCACCTGCACAGgaaataaaaatgtagtCACACGGGAACTCCTGGAGAGCATGAAGAGCGGCTGCATTGTGTGCAATATGGGACACTCCAATACAGAGATTGATGTGGCCAGTCTCTTGACACCAGATCTGACGTGGCGGCGTATAAGAAAGCATGTGGATCATATTGTCTGGCCAGATGGCAAACAAATAGTACTGCTAGCAAAGGGTCGCCTCCTGAATCTGAGCTGCTCTACTGTGCCTGTTTATGTGTTGTGCATCACAGCTACAACCCAGGCTTTGGCACTGATTGAGCTGTTTAATGCCCCTGAGGGCCGCTACAAACAAGACATTTATATGTTTCCCAAGAAACTGGATGAGTATGTAGCGGTGCTGCACCTCCAGAGCTATGACGCACATCTAACTGAGCTCACCGACGAGCAGGCCAAGTACATGGGCGTCAACAAGAGTGGGCCATTCAAACCAAGCTATTACAGatATTAAGTTGATGACAACCCACTCATggacataataataatacctgAACCTGGTTCTAGACTCTGGTCTCCATCTTTATTTTTGGTCTGTTTGTGGTTGAGTGCAACCTTTAGCCTGTGAAAATAAACTGCAAGTTATCTTCCTAGCTAGTTACGCAATTACGCAAAATAccacattaaatatacagccTGTATATCTGacaacagatttaaaaaatattttgtaaagaaataatacaatacatttcAATAATCAATTGATAATTGCATTTATTATGAGTGGTCATCCTTTGTAAATGGAATTCTATAAAACAGCATTCATTTGCTCTATAATGTGCACAACTAAAAGTACCCATATCCAAAAAACAAACTTTCTACTGGCAATATATATCCTTTGagaatataaagaatatatataaatatattaaaggttTCTAATACTCTGGATTCCATTAAAACACAATGATTAAAGGCAACACATCCAGTGTATTGTGACATAgacgtgctctctctctctctctctctctctctctctctctttcccataCAAATCCCACTTGTACCCACCCTCCAGTAACTGCATTACTACTCCAGTACTGTAGGTGGTAGCATTTAGCCATCCAGCTACAGGTGTCAGCCATATTCTGAAAACTCTCAACTGCCTGCTCATTGGCCCTGCAATGCTGTCTGAAATCTCCTCACACATCATCAGCCAAACGGGCTGGATCGATGCCTTAGTAGTGACCTTTATCATCCTTACAGCAACCCAGCCTCACAAACCGGTCACTGAGGGACAGACTGTGGTGGATGCCGTTTTTTCCAGCATTGGTGTCTGGTCTTAAAGTACAGgacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286977 lncRNA downstream 41370 41593372 ~ 41595965 (-) False LOC103022682
TU286833 lncRNA downstream 417892 41159230 ~ 41219443 (-) False LOC103035761
TU286793 lncRNA downstream 725699 40890814 ~ 40911636 (-) True G211242
TU286654 lncRNA downstream 911151 40718320 ~ 40726184 (-) True G211141
TU286653 lncRNA downstream 919133 40715530 ~ 40718202 (-) True G211140
TU287067 lncRNA upstream 203261 41853798 ~ 41860053 (-) False G211450
TU287065 lncRNA upstream 208326 41858863 ~ 41865986 (-) True G211450
TU287068 lncRNA upstream 208326 41858863 ~ 41860053 (-) False G211450
TU287066 lncRNA upstream 209722 41860259 ~ 41865986 (-) False G211450
TU287064 lncRNA upstream 216223 41866760 ~ 41872555 (-) True G211449
XM_015606777.2 mRNA downstream 3433 41627823 ~ 41633902 (-) True LOC103022995
XM_007252883.3 mRNA downstream 12135 41616553 ~ 41625200 (-) True bmt2
XM_007252884.3 mRNA downstream 22144 41608077 ~ 41615191 (-) True tmem168
XM_022684173.1 mRNA downstream 31137 41601106 ~ 41606198 (-) True LOC111195800
XM_015606784.2 mRNA downstream 36712 41593331 ~ 41600623 (-) True LOC103022682
XM_022684177.1 mRNA upstream 3162 41653699 ~ 41694976 (-) True LOC103042404
XM_007252887.3 mRNA upstream 3162 41653699 ~ 41694974 (-) False LOC103042404
XM_007252888.3 mRNA upstream 3162 41653699 ~ 41694974 (-) False LOC103042404
XM_007252886.3 mRNA upstream 3162 41653699 ~ 41694974 (-) False LOC103042404
XM_007252891.3 mRNA upstream 44952 41695489 ~ 41702386 (-) True LOC103043640
TU286910 other downstream 326600 41306946 ~ 41310735 (-) True LOC103037199
TU286524 other downstream 1073507 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 1258982 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 1274098 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 1697288 39933138 ~ 39940047 (-) True LOC103023530
TU287190 other upstream 554599 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 631592 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 1112664 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 1352868 43003405 ~ 43025465 (-) True G211912
TU287749 other upstream 1438485 43089022 ~ 43106949 (-) False LOC103021577

Expression Profile