RNA id: XM_022684178.1


Basic Information

Item Value
RNA id XM_022684178.1
length 2326
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC103043124
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41637335 ~ 41652545 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTACCATGCAGGAGTTCACTGAGTTttcacagcttttttttaatcagtctgCATCTCTATGTACTTagaagtgattggaacctgagAGTAATTATTTGGGTTATTATgggtgagtgaatacttttggcaatatagtgtatgtttAATCTCTCACCATTTTATGCTTAATATGAATTTCTACTATCTTTTCcacatctatttttatttattttaggtcCATATAAAGAACCATTTAACCAGCAAAAGAAACAATGCAGAACCTTTTTGGGGATGTAGATAATCTATAAATGACACCCTTTCTGGTAAATCAAAACACATGCTTTTTAGGAAAAACATCTTCACAAATTCCATCCTGAAGTTTACTATTCCACTCCATAGTCTGATAAGGGCAGAGAGATTGCCCTCCTCGTTTCGTGAAGTCTCACAGTTACCCTCATGTTTACCCTCCTTTATCCTGGCCTGTGTTTTTACACACATTCATCATGAAGGTAATGTTTATGCACCTCCAAGACTAGCCCAGTGTGCAGACAAGCACTGCCAGTAtctgttcagcagcagcagcatcccaGAGCATTTACAGCCATGACCGACAATGAAGCAGACGACAGCATTAAGAACACCTCACAGCTCGGACCTCCAGACCCAACAACTGCAGCCGGTAACGGATCTAAAGGCGAGAATGTCGGTATACAGCCATCGAGCAATGACAAATCGGCGACTGGAGCTTCAGCTTCTGTATCTGCTGTTACCTCTCAGCTGCTGAGAATGCTGGCGGCTGCAGAGGCCCGCAGGTCTGCCTATCTCCACAGTGCTGAAGAAGCATCCGCAGCCAGAGATGGAGAGGTCAGGGAGGCCCCcaggacagagagaCAAATCGAGGTCCCACAGCCACCACACGAGTTTAAAGACAGGCTCACTAAAACAGGCCATCGCTCTctgtcctgctctctctctcgctcttctacTGACAATCTCAGCTCAGAAAGCACAGACGAGGAGATTTCTCCTCAAAACAAGGAGCAGAAGAACTCTAAAGGAAGCAATGACTTCTGCATTAGGAGCATTCGTCAGGCTGCTTTTGGACGCAGAGAGATAGAAATGGCAGAACAAGAGATGCCAGCCCTGATGATGCTGAGAAAAGCGACCCAGGGAGAGAAGCCATTAGCTGGTGCTAAGATAGTGGGCTGTACCCACATCACTGCACACACGGCTGTGCTGATAGAGACTCTGTCGTTGCTGGGTGCTCAGTGTAGATGGACAGCTTGTAACATCTACTCTATCCAGAATGAAGTGGCTGCAGCTCTTGCAGAAGGAGGAGTTCCAGTGTTTGCATGGAAAGGAGAGTCAGAGGAAGATTACTTCTGGTGTATAGATAAATGTGTTAATGCAGAAGGCTGGGAGCCAAACCTGATTCTTGATGATGGAGGAGATCTGACACACTGGATCTATAGGAAATACCCTCAGCTGTTTGAGAATATTAAAGGCATTGTTGAGGAAAGTGTTTCTGGAGTTCACAGgttaTACCAGCTGTATAAAGCTGGTAAGCTCTGTAGTCCAGCAATAAATGTGAATGAgtcagtgataaaacagaagtttgaCAATTTTTACTGCTGTAAGGAGTCTGTCCTGGACGGgcTGAAAAGAACCACTGATGTAACTCTGAGTGGGAAGCAGGTGGTTGTTTGTGGTTATGGAGAGgtGGGGAAAGGCTGCTGTGCTGCACTAAAAGGGTTGGGAGCAATTGTGTATGTGACAGAAATTGACCCTATTTGTGCTCTACAGGCCTGCATGGAAGGGTTGCAACTTGCCAGACTGAATGATGTCATAAAGATGGTAGACATTGTCATCACCTGCACAGgaaataaaaatgtagtCACACGGGAACTCCTGGAGAGCATGAAGAGCGGCTGCATTGTGTGCAATATGGGACACTCCAATACAGAGATTGATGTGGCCAGTCTCTTGACACCAGATCTGACGTGGCGGCGTATAAGAAAGCATGTGGATCATATTGTCTGGCCAGATGGCAAACAAATAGTACTGCTAGCAAAGGGTCGCCTCCTGAATCTGAGCTGCTCTACTGTGCCTGTTTATGTGTTGTGCATCACAGCTACAACCCAGGCTTTGGCACTGATTGAGCTGTTTAATGCCCCTGAGGGCCGCTACAAACAAGACATTTATATGTTTCCCAAGAAACTGGATGAGTATGTAGCGGTGCTGCACCTCCAGAGCTATGACGCACATCTAACTGAGCTCACCGACGAGCAGGCCAAGTACATGGGCGTCAACAAGAGTGGGCCATTCAAACCAAGCTATTACAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286977 lncRNA downstream 43188 41593372 ~ 41595965 (-) False LOC103022682
TU286833 lncRNA downstream 419710 41159230 ~ 41219443 (-) False LOC103035761
TU286793 lncRNA downstream 727517 40890814 ~ 40911636 (-) True G211242
TU286654 lncRNA downstream 912969 40718320 ~ 40726184 (-) True G211141
TU286653 lncRNA downstream 920951 40715530 ~ 40718202 (-) True G211140
TU287067 lncRNA upstream 201253 41853798 ~ 41860053 (-) False G211450
TU287065 lncRNA upstream 206318 41858863 ~ 41865986 (-) True G211450
TU287068 lncRNA upstream 206318 41858863 ~ 41860053 (-) False G211450
TU287066 lncRNA upstream 207714 41860259 ~ 41865986 (-) False G211450
TU287064 lncRNA upstream 214215 41866760 ~ 41872555 (-) True G211449
XM_015606777.2 mRNA downstream 5251 41627823 ~ 41633902 (-) True LOC103022995
XM_007252883.3 mRNA downstream 13953 41616553 ~ 41625200 (-) True bmt2
XM_007252884.3 mRNA downstream 23962 41608077 ~ 41615191 (-) True tmem168
XM_022684173.1 mRNA downstream 32955 41601106 ~ 41606198 (-) True LOC111195800
XM_015606784.2 mRNA downstream 38530 41593331 ~ 41600623 (-) True LOC103022682
XM_022684177.1 mRNA upstream 1154 41653699 ~ 41694976 (-) True LOC103042404
XM_007252887.3 mRNA upstream 1154 41653699 ~ 41694974 (-) False LOC103042404
XM_007252888.3 mRNA upstream 1154 41653699 ~ 41694974 (-) False LOC103042404
XM_007252886.3 mRNA upstream 1154 41653699 ~ 41694974 (-) False LOC103042404
XM_007252891.3 mRNA upstream 42944 41695489 ~ 41702386 (-) True LOC103043640
TU286910 other downstream 328418 41306946 ~ 41310735 (-) True LOC103037199
TU286524 other downstream 1075325 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 1260800 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 1275916 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 1699106 39933138 ~ 39940047 (-) True LOC103023530
TU287190 other upstream 552591 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 629584 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 1110656 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 1350860 43003405 ~ 43025465 (-) True G211912
TU287749 other upstream 1436477 43089022 ~ 43106949 (-) False LOC103021577

Expression Profile