RNA id: XM_007252895.3


Basic Information

Item Value
RNA id XM_007252895.3
length 4353
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC103044642
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36793382 ~ 36804302 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTACCCGTGTATAGCAGGAGCTGtgtttagcagcagcagcagcagcagctcggcGGAGGGAGTTGAGTTTCAGGCACATGTAGCCGCAGCGGCCGCGCTCGGGTGGAAAGAGAGGAGCCATGCCGGCCTTGTGTtcgcccctctctctcctcctcctcaggaACAGGAGCGGGGCTGGGGGGAAGCTGCTCTCCCGCTGTCTGGCTCTCCACTCGCCATGTGGCTCAGGTTTTCCTCCGAAACGTCACCCAGCAAACCGAAACCGAGCCCCCTTACCGCGGGTGTCCGCCGCCGGCGTTAGCAGCGACTCCTCCGCCGCGGGGGGAAACCTGACCAGCTGGCTGTGGTCTGTTTACAATGAAACCAAACGGCAGACCGAAGATTTAATCCCAGTGATATCCAACAACTTTGTGAATCCGGACACCATATTTGCCAACAATGAGATGAGTCTGCAGGATATTGAAATCTACGGATTTGACTATGACTACACTTTAGCTTTTTATTCCAGCAATCTCCACACTCTGATCTTCAACATTGCTCGGGATATTCTTATCCAAGAACACAGGTACCCAGAAGGACTGAAGGAATACGAGTACATCCCAGATTTTGTGGTTCGGGGGCTGCACTATGATGTTCAGAAGGCCTTACTGATGAAGATTGATGCTTTTCATTACATCCAACTTGGAACAGTATACAGGGGACTTCACCCTGTTTCAGATAAAGAAGTCATTGCTATGTATGAGGGTTGCCATGTACCCCTAGAGATCATGAGTGACTTTTATGGAAAGAGTTCCCATGGCCACACTATGAAGCAGTTCATGGACATCTTCTCCCTGCCTGAGATGACCCTGCTGTCATGTGTCAATGATTACTTCATGAAGCACAACATTGATTATGAGCCTGTGCACCTCTACAAAGATGTCAAGGAGGCCATAGGAGATGTCCATGTAAAAGGAATCATGTATCGAGCTGTGGAGGCAGATATTGAGAAATATATCTGTTATGGTGAGCAGACCCATGCAGTTCTAAGGAAACTTtcagaaaatggaaagaaaatgtTTCTGATCACCAACAGCCCCCTGGactttgtAGATCGAGGAATGAACTACATCGTTGGAAAAGACTGGAGGGATCTCTTCGATGTGGTCATAGTGCAGGCTGACAAGCCCAGTTTCTTTAACGACCGCAGAAAGCCATTCAGGCGTGTTACTGATAAAGGAGTGTTGCTGTGGGACAGGATTCACCACCTGGAGAAAGGACAGATTTATAAACAGGGAAACCTGTATGAGTTCTTGAGACTCACTGGTTGGAGGGGCTCGAAGGTTTTATACTTCGGAGACCACATCTACAGTGACCTTGCTGACCTGACTCTGAAGCATGGCTGGAGGACCGGGGCCATCATCCCTGAGCTACGGAAGGAGATCAAGATCATGAACACGGAAGAATATGTGCACACCATGACCTGGCTGCAGAGCCTGACCAGCCTGCTGGAACACATGCAGGTACATCGAGATCCTGCCTCACAGGCAGTGATTCAGCAGtggatcagagagagagaagacatgAGGTCTCAGGCAAAAGACATCTTCAACAGTCAGTTTGGAAGTCTGTTCCGCACATACCACAATCCCACCTACTTCTCCCGTCGCCTCTCCCGGTTTGCTGACATCTACATGGCTTCTATCAGCTGCCTTCTCAACTACGACCTCAAGCACACCTTCTACCCCAGACGCACCCCACTTCAGCACGAGTCCCCCTCCTGGCCAGAGCAGACCAGTACAGGAGCCATGAACATACCCTTTCAGAGCCAGCAGGCAGGCTCAGAGtaagactggacaggtgaccgGTGGGGAAAACCTGATGTGTGTACTGTagtgttgctgctgctgttaccactGTTTAAGAAGACAAATCACAGCTGCATGAATGTTGTACTGACTGATGCTGGAGAATTAATGGCCTTGTTCAGACATGACTTGTCTGTCGGTGTAACTGCAGTAGAAAAACcataaagtacttttttttgtttgttttgcatgttttacCCATATATACCTTAGATAAGTTGGTAGTGTCAACTACTGTCAGTATAATGTTTGTGCAGTCTTACACTAATGTTGCCAGTAATAGATTCACATTCAGTgttgaatgtttaaaaaaaaaagaatgtgacGGTGGGTAATTGTCAATAAGACACAAAAAGAAGTTAGATCTTTACTATTTTAAACTGTCAGTaactcatttttatatttacagtatatctgaattctgtgtaaaatatgtattttggtCTTCAGCGAGTCTCTCTTTAGTAACTAGAGAATTgggatttatatttaaaaaaattatttgtattcattattttgttGCTAAATGATATTGTTGCTATTTTATCAGAATGTGCCTCTTGAGTGTGATGGCgattttaaaataagcaatagCTTTTCTCTCTATTTAGTGCATCTCTAAAGCTGGACTGAAAAAAGTGTATACACTCATCGTCAAAAAAATGGTTGTTCTTTGTGGGTAGAGTGACTCAGAATGGCAGCAGGACATCTTCAGTGACTAGTCCCACTTTCGTCTTAGTGGAGATTACTAACAAATCCGTGTGTTGAGATACCGTGGTCAGCAGCATCATCGATAGTTTGTTGTCACAAGTTACACATCCAGAAGACATAGTGTGTCATAGCGTGAGGTGCAATGTCGTATGgtgccagatcacctttggtcttcattacaggcactttaacAGCCCAACTTTATGTTAATGAGGTTCTACAACCACTGGCTCAACCTTTTCTGAACAAGTTCTGAACTATTCCAACAGGATGATGCTCATCCACATGGTGCTGCCATCTAAAGAGCTTGGcttaaagacacagatactatgccatCACCAGCTGCATCCACAGACCTATCCCCAAtcaaaaatgtgtgggatgttaCTTTTGGATGTGTTATTAACAATCCACAGGaaacagttaaaaatatatctaaatcTTCATGCTGAGACCTGATGCATGCTTTAAACACTATTGCACCCTTTTTATCGTTTATTGGTTTTGGTCACCTTTATCTGGCATGTTaatctgacacttccttctgggcgCAACTGTttctttgatgatgagtgtatataGGGTGCAGGATTCCTCTTTAGCACTGCATCAGTCTGTATCAATCAAAGCTCAAATCCAAACCCCAACTCAGGGACGGATTAATCTAGAGGGCAACAGCACTCCACAGTTTAGTGTTTTTCTGCTCTTACAAACTTATTCAActcattaaagcagcagtgggagataattgtttgttttgctTATGTGCTCCCCCTACAGCTGGAAGGTGGAATTCTTGTTTTGTTccactgcagtaaaaaaaatagatttgtgAGCTTCAGCTTATGGACAGCAGAAACCATGCATTTGTCAACAAGCTGGGAAAAGCTAAGCCAGCATCTAAAGTAAAGGAAACACATTGACAAGAGTTTTACGCACGCTACATAGTTGTGGTGAAAGATTTCGTCCAGCTCCATTAGCATAAACATGATTCTGAAATTGCTcttttaatgataaaatgataatgtATTCATAAGGAATTTGAGTTTTAAGGGATCAGAAATGAGCTAATATACTTGCAGGTTGCATCAGGTGTGTTACAGTATAGAAATGACTAAACTGTGCAGTTGATAAAAACTAGCATCAGATCAACAACAGTCACTACATTCACCATGCTGCCAAAGCAAACAGCAATCTGAACTACTGCATTTATCCTACAGCATACCTTCGATAGTATTGTATCTTGGTGAATATTATTAGATACGCACAAGTTCCTGtgagtcataaaaaaaaaccacaaaCATTTTAGACGGCTGCAAAACTGTAGAAACCTGGTGTTTATGCTCTTTAAATGCCTTTTACTTGctttatttgtgtgttaaatTGATTTACAATTCTTTCTGCTGAACATAGGTTCAATATTATTGATATTGCTTATAAAACaatttgtgtttaaatgtgatcTTTCCTAATTGTACAATCTGTCAAAAATGTTTATACACAGAATAGGAACCTTTCagcagaaagaaaacaaaatggtttatttatgttttcaaTTGTTTGCACttatataatcaatattttgcTTATAATTGCTTTagaccttttattttttcaaataatgAAGAAGTTGATGTGTTGGACCTCTGTAATGCAAAGCCTTGAGTGATTACGGCattttttgtttggttgttttgACTTTTTTCAACTTTGTAGTTTACCGTAGTTTACGTTATTCAGTTTGGGTCATACTGtttgtgtgatttatttattaaataatatctctgaaatatta

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285088 lncRNA downstream 22385 36769669 ~ 36770997 (-) True G210076
TU285085 lncRNA downstream 25831 36765414 ~ 36767551 (-) True G210074
TU285074 lncRNA downstream 59176 36733790 ~ 36734206 (-) True G210065
TU285004 lncRNA downstream 175574 36617584 ~ 36617808 (-) True G210014
TU285002 lncRNA downstream 289487 36503639 ~ 36503895 (-) True G210012
TU285135 lncRNA upstream 829 36805131 ~ 36805452 (-) True G210110
TU285129 lncRNA upstream 5009 36809311 ~ 36810484 (-) False c24h12orf73
TU285132 lncRNA upstream 11369 36815671 ~ 36822106 (-) True G210107
TU285146 lncRNA upstream 67277 36871579 ~ 36871944 (-) True G210120
TU285245 lncRNA upstream 303398 37107700 ~ 37108089 (-) True G210169
XM_022684365.1 mRNA downstream 579 36790029 ~ 36792803 (-) True LOC107197706
XM_022684035.1 mRNA downstream 102058 36689599 ~ 36691324 (-) False LOC111195785
XM_022684034.1 mRNA downstream 102058 36689599 ~ 36691324 (-) True LOC111195785
XM_022684026.1 mRNA downstream 1529974 35172219 ~ 35263408 (-) False rnf130
XM_007252896.3 mRNA upstream 5005 36809307 ~ 36810496 (-) True c24h12orf73
XM_007252897.3 mRNA upstream 5005 36809307 ~ 36809925 (-) False c24h12orf73
XM_022684040.1 mRNA upstream 17981 36822283 ~ 36827999 (-) False LOC103023613
XM_022684039.1 mRNA upstream 17981 36822283 ~ 36827999 (-) True LOC103023613
XM_022684037.1 mRNA upstream 23589 36827891 ~ 36836649 (-) True LOC103023303
TU285068 other downstream 82639 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2043176 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2156083 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2161064 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2518789 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2723331 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2809416 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2842052 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 3128836 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3556956 40361258 ~ 40363237 (-) True G210991

Expression Profile