RNA id: XM_015605100.2


Basic Information

Item Value
RNA id XM_015605100.2
length 1563
RNA type mRNA
GC content 0.51
exon number 10
gene id eef1g
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37072586 ~ 37082206 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATTTCTGCGACGTGCCCCCGGTATACGACAGCAGCGCGCGCCTCCGCTCCTTCTTTCTCTCGTCCTAAAGATGGCGGCAGGGACTCTCTACACATACGCAGAGAACTGGAGGGCCTACAAGGCTCAAATTGCAGCCCAGTACAGCGGGGCTCGTCTGAAGGTGGCGAGTTCCCCCCCTGCCTTCACCTTTGGGCAGACGAACCGCTCCCCTGCCTTCCTCAACAATTTTCCCTTGGGCAAGGTTCCAGCTTACCAGGGTGATGATGGCTTCTGTCTGTTCGAGAGCAACGCCATTGCTCACTACTTGAGCAATGATGCCCTCCGTGGCAGCACTCCTCAAGCCAGTGCCCAGGTTCTGCAGTGGGTCAGCTTTGCTGATTCTGAAATCATCCCTCCAGCTAGCGCTTGGGTCTTCCCAACCTTGGGCATCATGCAGTTCAACAAACAGGCCACAGAGCAGGCCAAGGAGGAGGTGAAGCGTGTGCTCACTGTCCTGAATCAGCACTTAAATACTCGTACTTTCTTGGTTGGCGAGAGAGTCAGCCTGGCTGATATCGCTGTGGCCTGCTCTCTGCTGTGGCTCTACAAGCAGGTTCTGGAGCCTGCTTTCCGCCAGCCCTACCCCAACGTCAATCGCTGGTTTGTGACCTGCATCAACCAACCTCAGTTCAAGGCTATTCTTGGGGAGGTCAAGCTGTGTGAGAAGATGGCTCAGTTTGATGCCAAGAAGTTTGCTGAGAGCCAGCCCAAGAAGGAGGCACCTGCCAAGAAGGAGAAAGGTGGCAAGGATGCTGGTAAGCCACAGCAACAgcaggagaaaaaagagaagaaaaaggaggagaagaaaccCGCTCCTGCTGCCGAGGAGATGGATGAGTGTGAGGCTGCTCTGGCTTCTGAGCCCAAAACCAAGGACCCGTTTGCTCACCTTCCAAAGAGTTCCTTTATTTTGGACGAGTTCAAGAGAAAGTACTCTAACGAGGACACACTGTCTGTGGCGCTCCCTTACTTCTGGGAAAACCTGGACCGCGAAGGCTACTCTATTTGGTATGGCGAGTACCGCTTCCCTGATGAACTGGCCATGACCTTCATGAGCTGTAATCTTATCACAGGAATGTTCCAGCGACTCGACAAACTGCGCAAGAATGCTTTCGCTAGCGTAATCCTCTTTGGCACAAACAACGCAAGTTCCATCTCTGGCATCTGGGTCTTCAGAGGCCAGGAGCTAGCTTTCCCTCTCTCTGAGGACTGGCAGATCGACTACGAGTCCTATAACTGGCGCAAACTGGATGTGGAAAGCGAGGAATGCAAGACTATGGTGAAGGAGTACTTTGCATGGGAGGGTGAATTCAAGCACGTAGGCAAACCTTTTAACCAGGGCAAGATCTTCAAGTGAGCATCAACGGCACTTACCAACAACTATCAACATCTAAATACAAGGACATGCGACCACTTTGTGTGAAAAAGGAACTTAAAACCCAAGTTGGAAGGGATTGTATGCTAAAATGGTATGAAGAGGTTTTGAGttgatgaaataaataaaaaaatgtttttcacagtC

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03233 EEF1G; elongation factor 1-gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285146 lncRNA downstream 200642 36871579 ~ 36871944 (-) True G210120
TU285132 lncRNA downstream 250480 36815671 ~ 36822106 (-) True G210107
TU285129 lncRNA downstream 262102 36809311 ~ 36810484 (-) False c24h12orf73
TU285135 lncRNA downstream 267134 36805131 ~ 36805452 (-) True G210110
TU285088 lncRNA downstream 301589 36769669 ~ 36770997 (-) True G210076
TU285245 lncRNA upstream 25494 37107700 ~ 37108089 (-) True G210169
TU285249 lncRNA upstream 45488 37127694 ~ 37128205 (-) True G210173
TU285275 lncRNA upstream 82843 37165049 ~ 37167366 (-) False LOC103033395
TU285279 lncRNA upstream 146055 37228261 ~ 37228612 (-) True G210197
TU285314 lncRNA upstream 216908 37299114 ~ 37301802 (-) True G210223
XM_022684366.1 mRNA downstream 33855 37003908 ~ 37038731 (-) True LOC103034997
XM_022684046.1 mRNA downstream 68951 36951881 ~ 37003635 (-) False LOC103039285
XM_022684044.1 mRNA downstream 72269 36951881 ~ 37000317 (-) True LOC103039285
XM_022684045.1 mRNA downstream 97029 36951881 ~ 36975557 (-) False LOC103039285
XM_022684037.1 mRNA downstream 235937 36827891 ~ 36836649 (-) True LOC103023303
XM_007246459.3 mRNA upstream 1770 37083976 ~ 37086979 (-) True polr2g
XM_022684047.1 mRNA upstream 18089 37100295 ~ 37106457 (-) False LOC111195788
XM_022684048.1 mRNA upstream 18089 37100295 ~ 37105060 (-) True LOC111195788
XM_007246456.3 mRNA upstream 82828 37165034 ~ 37204385 (-) True LOC103033395
XM_022684049.1 mRNA upstream 124033 37206239 ~ 37218291 (-) True LOC103033714
TU285068 other downstream 361843 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2322380 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2435287 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2440268 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2797993 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2445427 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2531512 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2564148 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 2850932 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3279052 40361258 ~ 40363237 (-) True G210991

Expression Profile