RNA id: XM_015606777.2


Basic Information

Item Value
RNA id XM_015606777.2
length 5066
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC103022995
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41627823 ~ 41633902 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGaaaccttattttaaaatgcaaatcACGTCATTAACTTTACTTGGCTTGGAAGCAAATGGGATGACCCATCACACTGTGGGAACCTGTATTATGTCAGACAAATCCATATTCCATattacacactttttaaaaatagaagtCAAAATGACCATACCTGTTATCAGCAGGAAGTCCAAATACCAGTAGTTTGAGTTTTgtataatatagattttttaagcTAATAATAAGGGTAACTGGTTAGATGTGTGACGTATGGATGATGTGAAAAAGTAACAAATGGTTCCACCTTGGGGAAAATTTCAACCTCTCACTAAATGGCAGAAGCTAGTTTGGGGGTCTGTGTCACTGCTAACGTTTATGTGTGACGTGTTTGTAAgttatatttacagcattcCCCCTGAGCCTTAGCTGCATAGTTTGGAGCTCTATTAATAGTGCTGGCTTCTTGCTACAATGTCAAACGTAACTTGATTCGGTCTGCTAAGTCACACAGTGTTGTGTGTCAGCTGTTGGCCACCTCCggttctctctcactctgcctgATGGAGCCCGCAGTGGAAGAAGTGTGGAGCTCCGGCCGAGACGGGTCCAATCTTCTGGGTCTGCCGGGGCCTTGCCCCTGGGATGACGATGACGAGCCCCTAGGTCTGGGGGGCATCAAACCCAAATCCTCTCCCATCCCAAGACGCCGGAGCTCAGAGTTTTCATGCTCTGATGATGAATCGCAGCCTCCGCCATCCAGCAGCCGCAGGGTATCTTTTGCAGATGCCTTTGGCCTGAGTCTGGTCTCAGTCAAGAAGTTTGATTCCTGGGGTGTGTGTGGCCCCTCAGATCCACTGGAGGGGGATCTCAATGAGGTGAAAGAGTATTTCCTGTCCCAGCTCTTCACCCCTCCATCTACGCAACAAGAACTGATCCAGAAGGTTCAGGAGAATAAGCTGGAGCTGGAGAGTCTGGAGCTTCTTCCTGGCACCACCACACTCAAAGGCATCATTCGTGTGCTCAATCTGAGTTTTGAAAAGATGGTCTACATCCGCACCTCTTTGGACTGTTGGAGCAGTCATTTTGATTTGCTGGCAGAGTATATTCCTGGGTTGAGTGGTGGTGATACGgactgcttttccttcaggcTCACGCTGGTCCCTCCATTTGGGGAACAAGGAGCCAGGGTGGATTTCTGCCTTCGATATGAAACACCTTGTGGAACTTTCTGGTCCAACAACAAAGGCCAGAACTATGTTTTGTTTTGCCATGAAAGGAGACAAGAACAAGGTCAGAATGAGAAgaaacacactaagaaaagcTGTCTGAAGTCAACCAGCCATGACTGTTCCTCTGAGTCCAGTTCTACCTCGAACACAGAGGAAATTCCAGAAATAATCCTAAACTGTGGGATGGCAGCTCTTGCTGAACCTGTCGAAGAGGACAAAATACAAGAGGAAAGCAGTAAGCTGCAGGAGGAAACCATTCGTAACCGCAGTAAGAGAAGCAGGAGAAAAGCTGCACGACTGGCAAAAGTGAAACAATACTTTgctgaaagagaggaaaaggacATCCAGCAGTTTGATAAAGACTCCATTGAAGCAGCTGTAAAGGTGAATGTGGAAAATCCTGTTCCAGAAGAAGTGGAGGCACCTTTAAACCTTTCAACACCTCAAACAGATGCATTGACAGAGATGCAGGACAGTGTCTCGCTTTCACCTGCTGAGGAAATTAAGATGCAAAAATGTACCTCAACTTCTGTGGATACTGATAGCAAACAAGTTCCTCCTGCCAATATTCAAACACAGGACAAGGAAAATATTCCAGCAAGCCACTGTGAACTAACAACTTGCATATCTCAGGCAGTGCTGTCCCCTGTGGATTCTGTAAACTCTAATAAATCAGCGGTGAGCTCTGTCAGCTCTGTCTCGCAAGCACTGGAAAACAGCCAAAACAAAGAGACACTTACAGGGCAGACAGCTTCGGTCTCACAGCAACCTCTTGAGTGCCAGACCTATGAAACATCtattaacaaaaatgttgaaaaagcATGGGAATGCTTCGAAAAAGGTGCTATGGGAAGAATGGGGAGCACAATGGACATAAGAATGGGTGAGGACACAACCAGCAGTGAAGATgacataaaacacaaagacatcTTAGAAAATAAGCCAGACATTCAACCATCTGGCCATAACTTCACTTTTGAGACAATAGTGGCTCCTCTTTACCACCAAGTTTTTGAGAGGATGGAAAGTGAGAGAAGAgactttataaacacaaaattcaATGCTGGAAGGTCAGCTAGAAAATGGGAAGATGAATGTCTGAGAACAGTCACGTACCAGAGTTATCCCAGGACACAAAGCCCTGAAACAAGGCCAAATTCATGCATCTCGAAAAAACATGATCTTAATGATGGGTATTATGGGACCTGCAGAGATCTCTGTCCAACTGATTTATTTAACACAAAGAACACCACAAAGGAACCACCATCTGGCACCAATGTAAACAGAGAACTTGCAAAAATGGAGACCCCCTTTCATGATCTCTCGGTAACGGACAAAATGGAGCCCCCAGTGAATAGTAATGTCCCAGAACCGAAAATGTccacacaaaaacaacagttaTCAAACAGCCTGCCATTACAACTAGAATGTTTGAACTTGACATCCTTGAGTTCTCTGGCAGAGTGCATACCTaatcaaaaagaagaagaacaaaatCAGGAAAGAATAAATGTACACAGTGAATGCTGTTTGCCTGATAGCACTTTAGAAGATCCATCACAGAACGCAAGCTTTCAGAGCAAATGTCCTCCAGAAGATCCACAGCAAGAGGATATATCTGTAGATTACATGGTTTTAACCACACAGCCTGACTTATACAGAGCAAATGTCAAGACATCACCCACAGACAGCTCAGCCACCCACATATCCTTTGAAACTGGGCTTAGCACGGAGCTCACCAAGATACAAGGCATAGAGGCCAAATCACTGCAATGCCAATGTTCAGAGGGGACACAAACACCCATGGAATCTACTTTTAATGAAATACTGCCTAGCAGCAAGTGTCTGGAAGAAAGCCACAGACTCATTCCAGACTCTTCTTCATTCTATACTCATATTACCTCAAACGTCATGTCTAACTTTAACCAAGATGAAGCTTCAGAACCGTCTCAGAATCTGACTTCACTGACCCCCATACAAATGCCAGACTTCACTTCATTCGAGGAAAGCCAAAAAGCAGCTGGCACTAGACCCGTCCAGTGTAAGGTCACAGATCTTACACAGGGTATAGAAAACATAAGTGAAATTATTGATGGTATTTCCTGTCATGTTGGCAAGGACACTAAAACAAACAGtgatagaaataaagaaacagatGATTTAGAAAGAACACATATAATCCTACAAGACAATACTCTGGACAGGACTTTATTACACCCTCTACCCTCCGGTAAAGAACTGTCAAGCGTTTCTAAAAGTGTACTACAAGAAAAAGAGGCTGATATCTTTAATGAACACAAACATGTAGAGTATATTGATGAGAAAAAGGACCTGAAATCAACAGACAAGGAAGAATACCAAACAATGCAAGTTTCAGAGGAAGCAAAAGAGTTAGACAAGCTGAAATTACAGCCACAAGAAGTAGTAGAAGAAccaatacaaaaagaaaataaagaacaaaaaacagaagaaagtgAACATGAACAACAGGATGTAcctaaagaagaagagaaacaaTTCCTAAACCTAAAACATGAAGGAAAAGAGGAACAAAAGCAAGAAGAACAGAAAGAACAAACACATGAATATAAACAACAAGAAGAATATGAAGAACAGAACCTAGAAGAACAAGAAGATAAAGGAGAACAGAAAGAGCAAGATAAGGAGGAAGAACTAGAAGAAGGTGAGGAAGAACTAGAACAAGAACAGCAAATTGATGAAAAGGAAGAACTAGAAGAATGGGAGGAGGAACTAGAACAACAACAAAGTGATGAAGAGGAAGAACTagaagaacaacaacaaagtgataaagaagaagaactagaagaacaacaacaaattGAAGAAAAGGAAGAATTGGTGAATAATGATACTTTTGAAGATGAATTACTCTAcatagatgatgatgatgaggaagaTGCAGAAAAGGAAACAATATTAAAAGATTCACAACAGTATTTTGAAGAATGGGAAAGAGAAGAAGATCTTCATTCTCTTATAGTAGAGGTGGAGGAGCAGGACATCATCTGCAGAGTGAGCACTGTAGGTACTTTAGAAAACACAACTAGAGCAGATTCCATAAAGGAGGTACACCCACAGATCAGACAGGAGCTGCAAAAGGAAGAGCAAACTGTTAGTGGAGAAAAAGGGATCCAGTGGGATACAGATTCTTCAAAGCATGCTCTGACAGGAAATCATGATACAACATTTAGTGACACAGTAATGCTCAtcaacaaagaagaagaagtgtgctttcaaacaaatgaacaacaaGTTACAAAGGATGCTGCTGCGGAGGTCAACAAACTGCAGGAGAACTTGAAGGGCGTACGTAATCAGAGTGAGAAGAATGTGGGTGAGGATACATCCACAGAATCTATATCTGATGAAGAAATGGACCTGTATCTTCATCAACTAAAGATCAGCCAAAAGCCAGGAGTAAAAGACACAGTTTCCAGTGGGAACTACTGCAGGAGGTCATCTCTGAGGACAATGCATTCACGTATGCCTTCCATCTCAGAATCTGTGGATGAGGACCAGCCAAATGCCTCACTGGAAGATCTGACAAATGAGGAGATGACAGAACTAGAGAAGGCCACATTGCCTTTAGTTGATGAAGAGGAAGAGATGCTTCGGCGCAATGTACTCTGGTGGAGAGAGTTCTTTTCCTCTGATAACATGTCAAAAATGATCGGGTGCACTTTCTTgttagttgtttttttagttacGGCTTATTACTATGACTTTGTTGCATGTTTTGGGCTCTATTTGCTTGCCTTGTATTGGCTTTACTTTCGAGGTGAATCAGAACCTTTCAAAATCACACAACCTAATAGATAAGTATAATACAAAA

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286977 lncRNA downstream 31858 41593372 ~ 41595965 (-) False LOC103022682
TU286833 lncRNA downstream 408380 41159230 ~ 41219443 (-) False LOC103035761
TU286793 lncRNA downstream 716187 40890814 ~ 40911636 (-) True G211242
TU286654 lncRNA downstream 901639 40718320 ~ 40726184 (-) True G211141
TU286653 lncRNA downstream 909621 40715530 ~ 40718202 (-) True G211140
TU287067 lncRNA upstream 219896 41853798 ~ 41860053 (-) False G211450
TU287065 lncRNA upstream 224961 41858863 ~ 41865986 (-) True G211450
TU287068 lncRNA upstream 224961 41858863 ~ 41860053 (-) False G211450
TU287066 lncRNA upstream 226357 41860259 ~ 41865986 (-) False G211450
TU287064 lncRNA upstream 232858 41866760 ~ 41872555 (-) True G211449
XM_007252883.3 mRNA downstream 2623 41616553 ~ 41625200 (-) True bmt2
XM_007252884.3 mRNA downstream 12632 41608077 ~ 41615191 (-) True tmem168
XM_022684173.1 mRNA downstream 21625 41601106 ~ 41606198 (-) True LOC111195800
XM_015606784.2 mRNA downstream 27200 41593331 ~ 41600623 (-) True LOC103022682
XM_007252878.3 mRNA downstream 49309 41473353 ~ 41578514 (-) True dock4
XM_015606783.2 mRNA upstream 3433 41637335 ~ 41652545 (-) False LOC103043124
XM_015606782.2 mRNA upstream 3433 41637335 ~ 41652544 (-) False LOC103043124
XM_015606780.2 mRNA upstream 3433 41637335 ~ 41652544 (-) True LOC103043124
XM_022684179.1 mRNA upstream 3433 41637335 ~ 41650537 (-) False LOC103043124
XM_007252889.2 mRNA upstream 3433 41637335 ~ 41650537 (-) False LOC103043124
TU286910 other downstream 317088 41306946 ~ 41310735 (-) True LOC103037199
TU286524 other downstream 1063995 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 1249470 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 1264586 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 1687776 39933138 ~ 39940047 (-) True LOC103023530
TU287190 other upstream 571234 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 648227 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 1129299 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 1369503 43003405 ~ 43025465 (-) True G211912
TU287749 other upstream 1455120 43089022 ~ 43106949 (-) False LOC103021577

Expression Profile