RNA id: XM_015606785.2


Basic Information

Item Value
RNA id XM_015606785.2
length 2297
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC103027945
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40584365 ~ 40590468 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCTGTCTACCATGAGAAAAGCTTTCTTAAACTAAAGCCACATCCTCATGCACGTCTCATTCTACGCATGCTGGATTAAGTGCAGTCTTACTGGAGTGCTGGGAAAggatgatttttgtgtttttgttgattttactgGTGGCAGGAAGGGTTTCTCCTCTGGGTTTGATAGAGCAGCCTCCAGTGCTGTGCTACCAGGAGGGAGTACCATGTAATTTTACATTCtGTGGGCAGAACTGTTCAGATAAAGGGTGGGTGAAGCCGAGGAAGGTCAGCCCGGGGTTACCCGGGGTGAAGGTGTCATCCAGGGCAGATCAGAGTGCAGAAAAAATTCCTGTCCTAATTCTCACATTCACTCTGCCTACTGATGGAAGCATTTACACGCTGCAGGGGACTGAGGTGCATGTGCTTGAAGTTGCCACCAACAGCAGTCTGTGTGTTCGCTACATCTTTAATGGGAAATTTAAAACGGTTGCAACACCGGATAAGAAGCCATGGTCATTTACTCTAGACCGCATCATGGTCCAACCAGGGTTGAAATATCAAGTTTCTGTGTCTAATTTGCCAAAGCCAGATGTGGGAAGACATGCAGAAGTGCGGCATATCACAGTTGCGGgTTGTAAAGATCCTACAATGGGAAGACTTAAAGTATGCTTGGAGAACGGAAGCCTCTGGGACCCCAACCTCACCTGGTCAGTTTCAGACAATAACTTTAATGGAAAGGAGATTGCAGTGACCTTTAATACAGGACAGTTCTCTGAGCGATACAGAGTGGGCCTTCACCTTCCTAAATTTCACCCTGACCACATGGTTTTAAAGGACAATCGTACTTCAATCAATGTGACTTTTCATTTGGACGCTATGCAGATAAAGCACTGTGAATTTGTTGTTGTGATTAAACCATTCTTTGTCAGGTGCATGAATAACTGTTTAGAATACCAGCAGAAGGTTCAAATCTGCTCAGGCTCTACCAACAACATATATTACATGCTTTGGACTGTTTTTGGCTTGGTGGGACTGATATTATGTGCCTACAAGGCTCATAAGGAGTTTCACAGCAACTCAAAAGACGATTCATATATGTCTTCTAATGACACCACTGACATGGAAGAGGAGAAAATCCATTCTATACAAAGGCCAAGTAAAGTCCTTATTATCTACTCTCTGGACCATCTTTTGTACAAAGAGATTGTCCTCAAGCTGTGTGCCTTCCTAAGGGCAAGGTGCGGCACTGACGTCATGCTGGACCTGCTGGACTTCACCCAGTTGAGTACTATAGGCAGCATCCAGTGGCTGGAGATGCAGAGGGACAGAATGTCGGGGTCTTCAGATAAAGTACTGATATTATGTTCTCCAGGTGTGTACGCCAAATGGAGGGCTATGTGTGGTGGTAACAAGGTGATGACCAGGGAGGACATCCAGTCGCCTATGGGAGATATGCTCACTCCAGCCTTAAGCCTCATCATACCGGACTTTGTGCATGCTTCGTCTTATCAAAAGTACATTGTGGCTTACTTTGATGATATCTGCAGTGAGACGGATATACCTGCTCCGTTAAACGTGGCAGTGAAGTACCAGCTCATGAAGCACTTTGAGGAGCTCTTCTTCAGGCTAGTCGACAAAGAGAAGCATGAGCCTGGAAGTATTAAACAGGTCGAAGGCATTGGAGGAGATGATTACTTCAACTCACTGCAAGGAATAGCCTTAAAAAATGCCATTGAGGCATTCCAAGCTTACCAGCTAGCAAACCCCAACTGGTTTGAAATGGAGCTTGTAGACACAGACGTAGAAATTGAGCCACGTGGACATAAACCGGATGAAAGTGCAGATGTTGCCTGTAACTGTGTTCTTCAGAACCAGCTATGGGTCATGGATGGTATAGATCCTGTACTTATCAACAATCTTGAAGGTCAGACAGATAAATGGGAAAATGGACTCACAGAAATTACAAACTTTTTTGACGAAGGGTATTATGCCTCCTGTGTTGAATTTAAACCCTGTAACAAAGCtctgcaacaagacaatgatcccaAGGGCAAAGCTTTGTTAAAGAACAAGGCATGGACATTTCTGGAGTTGCCTTCTCAGTCTCAAGCTGTAAATCCCACTCGGATTTAAAGAAAGCCATCACAGCACAGAAGGTTGTTCGGACTAACTGACAATTTAGAGAAAATCAAGGCAAAGGTATTCTCCAACAATTGAGGGTAAATTTAACTAATGTGCAAATTCACATTTATCAATGTATCAACTGAACTCaaacatttgaattatttaataaataatgtttatttgttta

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286530 lncRNA downstream 17188 40566889 ~ 40567177 (-) True G211058
XR_002651817.1 lncRNA downstream 31670 40551912 ~ 40552695 (-) True LOC111195793
XR_002651862.1 lncRNA downstream 32586 40550281 ~ 40551779 (-) False LOC103026547
XR_002651863.1 lncRNA downstream 32586 40550281 ~ 40551779 (-) True LOC103026547
XR_002651864.1 lncRNA downstream 34093 40544773 ~ 40550272 (-) True LOC111195848
TU286573 lncRNA upstream 20629 40611097 ~ 40611720 (-) True G211085
TU286626 lncRNA upstream 38904 40629372 ~ 40717113 (-) True G211119
XR_002651829.1 lncRNA upstream 61197 40651665 ~ 40652046 (-) True LOC111195798
TU286653 lncRNA upstream 125062 40715530 ~ 40718202 (-) True G211140
TU286654 lncRNA upstream 127852 40718320 ~ 40726184 (-) True G211141
XM_007252841.3 mRNA downstream 1412 40570582 ~ 40582953 (-) True LOC103028575
XM_007252837.3 mRNA downstream 14217 40558684 ~ 40570148 (-) False LOC103026726
XM_007252836.3 mRNA downstream 14217 40558684 ~ 40570148 (-) False LOC103026726
XM_007252835.3 mRNA downstream 14217 40558684 ~ 40570148 (-) False LOC103026726
XM_007252834.3 mRNA downstream 14217 40558684 ~ 40570148 (-) True LOC103026726
XM_007252851.3 mRNA upstream 97324 40687792 ~ 40704331 (-) False dnm1l
XM_007252849.3 mRNA upstream 97324 40687792 ~ 40704331 (-) False dnm1l
XM_007252850.3 mRNA upstream 97324 40687792 ~ 40704331 (-) False dnm1l
XM_007252848.3 mRNA upstream 97324 40687792 ~ 40704331 (-) True dnm1l
XM_007252847.3 mRNA upstream 114661 40705129 ~ 40710254 (-) True dnajb9
TU286524 other downstream 20537 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 206012 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 221128 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 644318 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 788424 39646354 ~ 39795941 (-) False atp8a1
TU286910 other upstream 716478 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1614668 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 1691661 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 2172733 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 2412937 43003405 ~ 43025465 (-) True G211912

Expression Profile