RNA id: XM_022683619.1


Basic Information

Item Value
RNA id XM_022683619.1
length 1460
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103037875
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13726665 ~ 13733660 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagttGTAGATCGGGTGTTAGTCGTAAATTGTTACTGCTGTAAAGTGTAACAGCGGTAGATCAGGTGTTACAGTGTTATAGTAtctgggtgtgagtgtgtggagtgagGAGAAGATGACTGATCAGGAAGCAGCTCCAGCATATATGATCTTCATCCTGGTTTTCTGCTTCTTCATCACCGGCCTGCTGGGATTTATCTTCTGCCATGTGCTGAAGGACCGGGGGTACCGCTGCAGAACCGGAGAACCGGAGGACGAGGAGAGTAAAAATACGTACGGAACAGAAAACTATGatgatgatgataatgaagaCACTGTTGAGCGAATACTTAAGTGCATCATTGAAAATGAAGCAAATATGGAAGCTTTCAGTGAAATGTTGGGGAACCAGACTCCTCCCGCTCATCATAATCTACGatTTCTGCGTAAGGAGAGTGTGTGGAGTATTCCCTCTCATCATCACACCATCCACATGGGCGATCTGAACTTCTGCCACCACTGTGGGCGCGGCCACGCCAAGAAAACCCAGTGCAGAACCAACATGATCAGAACCAGGAGAGCCGGAGAGCAGACCGTGCTCTCTGTGGGCAGGTTTCGGGTCACTCACATGGAGAAGAAGAGTCCTCCAGACTCCGCTAATGTGACCATCTCAGAATCTCGTGATCATCCAGATCTCCTGGTACCTCTGGATGGTAAATCTGGACTCAGGGACGCCCCGATACCGAATAAAGAGAGTTATAATATCCGcaacatgtttaaaaacactgaGGCAGCGAATCCCTCCGGACCACAACCGTCCAAACCCAAGAGAAGAGACAGTCTTCCGGTCGTCCGGCGGGGAAGCGGTGCAGTCGGGCGGCGAGACGACGACAGGCGGGACAGCGTCACAGTCGGTCGGGACGGCATTGACGTGGGAGGGGAAGGCGAGACAGTCGGGCGGGGCGGCAAAGCCATGGTGAGAGAGGACAAGACAGCTGGTGAGGGCAGCAATGCTGTAGGAAGGGTCAGTGATGCAGTCGGGCAGAACGGTGACACCATTGGTCGACATGGCGATGCCGTGGAACGGGATGGTGACACAGTTGGGCGAGACGATGATGCAGTTGGGCAGGACAGTGATGACGTGACTATAAAGGATCCTGCTCCAGACAACAGTTTAAATTCAGATCAGAGTCCTGAAAATAATCCACAGTAATTTCATACATTCCACAAACAACTCatttctgctgtattttttaaaatatacatttaataggTTTAATTCATGTTACTATGTACATATTTAAcagtactactttaaaataaggctcctttattaagggtttattaatggttattaattagtttATGAACCAGGAAAGGCAACAGCGGTCTGTCGTTTATCAAacagtgattccacattcatttatactgatAAACcagcattaacatttctgttaactttattcagtttataataatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278629 lncRNA downstream 38829 13685401 ~ 13687836 (-) True G205361
TU278573 lncRNA downstream 42762 13581244 ~ 13683903 (-) True G205327
TU278592 lncRNA downstream 75838 13634724 ~ 13650827 (-) True G205343
TU278597 lncRNA downstream 83155 13639389 ~ 13643510 (-) True G205345
TU278595 lncRNA downstream 85080 13638574 ~ 13641585 (-) False G205345
XR_002651765.1 lncRNA upstream 540 13734200 ~ 13739028 (-) False LOC111195729
TU278633 lncRNA upstream 8960 13742620 ~ 13743347 (-) True G205363
TU278648 lncRNA upstream 10693 13744353 ~ 13777621 (-) False G205375
TU278645 lncRNA upstream 31565 13765225 ~ 13767526 (-) False G205375
TU278658 lncRNA upstream 35079 13768739 ~ 13779505 (-) True G205378
XM_022684323.1 mRNA downstream 179068 13536489 ~ 13547597 (-) True fgfrl1
XM_022683595.1 mRNA downstream 288492 13382812 ~ 13438173 (-) True LOC103037758
XM_022683600.1 mRNA downstream 370305 13350437 ~ 13356360 (-) True LOC111195721
XM_022683607.1 mRNA downstream 379260 13341821 ~ 13347405 (-) True LOC103034080
XM_022683608.1 mRNA downstream 379273 13341821 ~ 13347392 (-) False LOC103034080
XM_022683621.1 mRNA upstream 17753 13751413 ~ 13764223 (-) False atoh8
XM_022683622.1 mRNA upstream 17753 13751413 ~ 13763402 (-) True atoh8
XM_007236477.3 mRNA upstream 31856 13765516 ~ 13767091 (-) True LOC103037229
XM_022683623.1 mRNA upstream 40676 13774336 ~ 13777596 (-) True LOC111195730
XM_007236476.3 mRNA upstream 46485 13780145 ~ 13798633 (-) True hspa9
TU277652 other downstream 2142591 11583200 ~ 11584074 (-) True G204671
TU277526 other downstream 3081978 10644254 ~ 10644687 (-) True G204584
TU276738 other downstream 6077779 7624083 ~ 7648886 (-) False LOC107197584
TU276577 other downstream 7122187 6603676 ~ 6604478 (-) False jph3
trnai-uau_43 other downstream 7194136 6532437 ~ 6532529 (-) True trnai-uau_43
TU278618 other upstream 53 13733713 ~ 13739921 (-) True LOC111195729
TU278646 other upstream 39657 13773317 ~ 13777621 (-) True G205375
TU278710 other upstream 241017 13974677 ~ 13978450 (-) True LOC103035169
TU278963 other upstream 1810257 15543917 ~ 15545622 (-) True G205640
TU278995 other upstream 2097990 15831650 ~ 15832094 (-) True G205670

Expression Profile