RNA id: XM_022683622.1


Basic Information

Item Value
RNA id XM_022683622.1
length 1912
RNA type mRNA
GC content 0.46
exon number 4
gene id atoh8
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13751413 ~ 13764223 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATCATAATTAGATTGActgaaatcaataaatacattatgaCGTTCATAAcggccatattgcccagccccaCTTTAGTGAATTATTTTCTTACTGGTgcTGGAGTGTATCAGAGCAGGGTTATGCAGTGGGATGGTTCAGTACAGAAGCTGCAGCTGATGTCTGTCTGGCAGCAGAAGGTCTCGAGACTCACGGGAGCCGCAGCTCGCGACCTCACACCACCTAACCACCCCGTAACACCACGTAACCACCCGTAAACCGGAGCTGTTTACGGTGCAGTCCGCTGGGGCTCCGGAGCAGCGGGGTAATCAGTGGCCGGTTCTCCCGTTATTGGAGTCGGTAGGACAGCGGTCTGGTTCCGGACGGGCTGTTTCGGGTCATCGGACATGAAGAACCCTCACGTGATCCCGGATCAGTACAGTCCAACAGAGGGACACAAGAAGTTCAAACGGAAAGTCCGGGGCTCGGTTAGTAAGCGCGAGACCGAGGAGAGGGACAGACCCGACTCTCCGACTCTGCCCGACCCGACGGGGCGACTGCTCGAGGAGGTCTACGGGAATCTCTGCGGGAGAACGTTACCGGACTTTGCTCTCGCTCCGCCGCGCGCTCAGCACCTTCTCCCGCCCGGGTTTATAACCGGAGCCCCGGATCAGATCCGGATCGCTAACGGAACCGTGTCAACGGTAACGGGGACTGTAACGGAATCAAAACACAGCACCGACCAGCCGTCTCCACCGGATACCGTGTATCAGAGCGAGCGCGTGCTGTGTAAAGATGTTGTATATAAACGTTCTGAGAGATGTCTGTCCGCGGGCTCGCGCGCTGACTCTCTGGACTCTCCGCGGAAACGGCTGGGGGAACCGTCCGGCGCCGTTACAGAGATCAAAGCCATCCAGCAGACCCGCAGACTACTGGCTAATGCACGGGAGAGGACCCGCGTGCACACCATCAGTGCAGCTTTCGAGGCTCTGAGGAAACAGGTGCCCTGCTACTCCTATGGGCAGAAGCTCTCTAAGCTGGCTATATTAAGAATAGCCTGCAACTATATCCTGTCCCTGGCTCAGCTTGCAGACCTGGACTACACACCCGACCACAGCAACATGAGCTTCAGAGAGTGCGTGGAGCAGTGCACCAGAACCCTGCAGGCCGAGGGCCGGTCCAAGAAAAGAAAGGAATAAAGTAAAGAGTTACTGCAGGAAGAAGGTTTAACTTCAGCCGGATCAGGACGAGCTGTATTTTCTACACATGCTGGAAATGAAGCAATAAGAAGATGTGGATCTCAGCTTTTATATGACTTTTAAAACAGATCAGTATAAGGTTACAGATGCATGatttaaagtttactaaaataatgaCAGTAACCTTTTTTTTGACTCAGATTTATCTAGAACACATTCAACACAGAGTAACACATCATACCtttataactgtgtaattataaGAAGATTATTATGAAGATTGTTATGAAGCTGACAGTGTTACACATCGTTGGAATATTTTAACTGCTCAGTATTTTGCCgtattttagaatttaattCAAGAGACGCATCAAGTTTTATATCAAACTTTATATCAAATCAGCAGCTGTACTGTTAAGGCAATAACTATATGAAGGGactatatgttaaaaaaatatgtctgtAATTCTGAATCAGTCAAACTGACAATCACAACTtcaattaatgaattaaaatgaattaatcatTACAGTTCCAGTGAGGTGGAGTACAGACGTACATCTGTAAAACCTTATAAACGTGACAGTACAAGTTTGGACAGAAAAATAACATGTCTAGAATATAACTTATGCTTATTTGTTTGTgcaagtttaaaataaatctgtaacattacaaatgtggattattttgtataaagttttcaaaataaaagttcctTTAATCATGAGAATCAC

Function

GO:

id name namespace
GO:2001014 regulation of skeletal muscle cell differentiation biological_process
GO:0061074 regulation of neural retina development biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09084 ATOH8; atonal protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278633 lncRNA downstream 8066 13742620 ~ 13743347 (-) True G205363
XR_002651765.1 lncRNA downstream 12385 13734200 ~ 13739028 (-) False LOC111195729
TU278629 lncRNA downstream 63577 13685401 ~ 13687836 (-) True G205361
TU278597 lncRNA downstream 107903 13639389 ~ 13643510 (-) True G205345
TU278599 lncRNA downstream 109828 13638574 ~ 13641585 (-) False G205345
TU278645 lncRNA upstream 1823 13765225 ~ 13767526 (-) False G205375
TU278658 lncRNA upstream 5337 13768739 ~ 13779505 (-) True G205378
TU278668 lncRNA upstream 63110 13826512 ~ 13827387 (-) True G205386
TU278669 lncRNA upstream 70165 13833567 ~ 13833945 (-) True G205387
TU278693 lncRNA upstream 149195 13912597 ~ 13918373 (-) False LOC103033675
XM_022683619.1 mRNA downstream 17753 13726665 ~ 13733660 (-) True LOC103037875
XM_022684323.1 mRNA downstream 203816 13536489 ~ 13547597 (-) True fgfrl1
XM_022683595.1 mRNA downstream 313240 13382812 ~ 13438173 (-) True LOC103037758
XM_022683600.1 mRNA downstream 395053 13350437 ~ 13356360 (-) True LOC111195721
XM_022683608.1 mRNA downstream 404021 13341821 ~ 13347392 (-) False LOC103034080
XM_007236477.3 mRNA upstream 2114 13765516 ~ 13767091 (-) True LOC103037229
XM_022683623.1 mRNA upstream 10934 13774336 ~ 13777596 (-) True LOC111195730
XM_007236476.3 mRNA upstream 16743 13780145 ~ 13798633 (-) True hspa9
XM_022683632.1 mRNA upstream 95819 13859221 ~ 13887086 (-) False csnk1a1
XM_022683631.1 mRNA upstream 95819 13859221 ~ 13887086 (-) False csnk1a1
TU278618 other downstream 11492 13733713 ~ 13739921 (-) True LOC111195729
TU277652 other downstream 2167339 11583200 ~ 11584074 (-) True G204671
TU277526 other downstream 3106726 10644254 ~ 10644687 (-) True G204584
TU276738 other downstream 6102527 7624083 ~ 7648886 (-) False LOC107197584
TU276577 other downstream 7146935 6603676 ~ 6604478 (-) False jph3
TU278646 other upstream 9915 13773317 ~ 13777621 (-) True G205375
TU278710 other upstream 211275 13974677 ~ 13978450 (-) True LOC103035169
TU278963 other upstream 1780515 15543917 ~ 15545622 (-) True G205640
TU278995 other upstream 2068248 15831650 ~ 15832094 (-) True G205670
trnae-uuc_23 other upstream 2379886 16143288 ~ 16143359 (-) True trnae-uuc_23

Expression Profile