RNA id: XM_022683673.1


Basic Information

Item Value
RNA id XM_022683673.1
length 1346
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC103024939
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 17199473 ~ 17246825 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCTTGTGTTTCGTTCCCACAGCTAGTCACATCGGATTCCTCTGGGAAAGAGCGCAAATCGGTCCCGTTTGAACACGGGGAACAGCGCGCGCGGGATCCGTCCGCCGCCACGAGGGTCTCCACCTCTCCCTTTGCCTGATTTCAATATCGCTCATTGATTTTGATTTGATCAGAgcataaacaaaacagaaaagagGGGAAAGGCaaataaagaggaaaagaggaagGTTGTGGATAATGACATCTGATCTATAGCGCGCCGCCGGAGCCGCCGCTGATGATCATCCAGTTTTTCTTAAAGTgacattagatttttttttatctcttcttttttcGCTCACGAGCCATCAGTGAAGATCTGAAGATCTCACCGGGTATCTTATCTCTCACGCGTCTCCCAAACCTTGTGCTTGACAGCGCGAGATTGCTTCCACGCGCtacttgtttctttttttgttttgattttattttccttttcattacatttgagtaattttttgtacatttttaagtggactaGAGAAAGCCAAGGAACACTCCGAGACTCCATCTGACCTGTCCAGACTTCAGCCTCGATTTTTACGGAGAGATAATTTTTTTGTGGAGCGATCAGATTTTTGCCAGAtaggacagaaagagaaaaagagagacggGGACTTGGGGAATAAATCtggataaagaaaaacaataaaaaggaaaagaagaagaagaaaaataagtgACCTGGGAGAATAGACAAAAGTCCGCGTGCTCATGTTCGGGATCCAGGAGAGCATTCAGAGGAGCGGGAGTAGCATGAAGGAGGAGCCGATGGGCGGCGGCATGAACGCGGTCAGGACGTGGATGCAGGGCGCCGGAGTGCTGGACGCGGCCACCGCCGCGCAGAGTGGAGTGGGTCTGGCCCGGGCTCACTTTGAGAAGCAGCCGCCGTCCAACCTGCGCAAATCCAACTTCTTCCACTTCGTGCTGGCTCTGTACGACAGGCAGGGGCAGCCCGTGGAGATCGAGAGGACGTCGTTCGTGGGATTTGTGGAGAAAGAAAAGgaACCCACCGGAGAAAAGACAAACAATGGGATTCATTACAAACTACAGCTCCTCTACAGCAACGGTATCAGAACAGAACAAGATTTTTATGTACGCTTGATCGACTCCATGACCAAACAGgcTATCATTTACGAAGGTCAGGACAAGAATCCGGAGATGTGCCGAGTTCTGCTAACACACGAGATCATGTGCAGccGCTGCTGTGACAAGAAGAGTTGTGGCAACCGTAACGAAACACCTTCCGACCCCGTCATCATAGACAGGTAAGAGGCGGATTAACACACCCTTcatttgtgcgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279530 lncRNA downstream 48424 17150509 ~ 17151049 (-) True G206099
TU279452 lncRNA downstream 203014 16994519 ~ 16996459 (-) True G206029
TU279440 lncRNA downstream 268122 16930762 ~ 16931351 (-) True G206018
TU279439 lncRNA downstream 269329 16929788 ~ 16930144 (-) True G206017
TU279419 lncRNA downstream 396536 16801936 ~ 16802937 (-) True G206000
TU279582 lncRNA upstream 31994 17278819 ~ 17279196 (-) True G206142
TU279589 lncRNA upstream 90116 17336941 ~ 17337141 (-) True G206149
TU279594 lncRNA upstream 109288 17356113 ~ 17356466 (-) True G206154
TU279605 lncRNA upstream 174103 17420928 ~ 17421193 (-) True G206164
TU279613 lncRNA upstream 203507 17450332 ~ 17450645 (-) True G206172
XM_022684329.1 mRNA downstream 75 16953824 ~ 17199398 (-) True LOC103044170
XM_022683672.1 mRNA downstream 363974 16803521 ~ 16835499 (-) True clint1
XM_007232888.3 mRNA downstream 406943 16788501 ~ 16792530 (-) True LOC103042614
XM_007232889.3 mRNA downstream 418238 16776472 ~ 16781235 (-) True trmt12
XM_022683671.1 mRNA downstream 426166 16747192 ~ 16773307 (-) True sytl4
XM_022684330.1 mRNA upstream 12961 17259786 ~ 17300993 (-) True LOC103041988
XM_007232885.3 mRNA upstream 65108 17311933 ~ 17319469 (-) True LOC103041682
XM_022683679.1 mRNA upstream 313434 17560259 ~ 17597003 (-) False sh3tc2
XM_022683678.1 mRNA upstream 313434 17560259 ~ 17594042 (-) False sh3tc2
XM_022683676.1 mRNA upstream 313434 17560259 ~ 17594042 (-) False sh3tc2
trnav-uac_4 other downstream 568422 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 569906 16629501 ~ 16629567 (-) True trnav-aac_55
trnav-uac_3 other downstream 570760 16628641 ~ 16628713 (-) True trnav-uac_3
trnav-uac_2 other downstream 571956 16627445 ~ 16627517 (-) True trnav-uac_2
trnav-uac_1 other downstream 573158 16626243 ~ 16626315 (-) True trnav-uac_1
TU279578 other upstream 24422 17271247 ~ 17300957 (-) False LOC103041988
TU279905 other upstream 792881 18039706 ~ 18041913 (-) False LOC111195732
TU280287 other upstream 1591544 18838369 ~ 18838916 (-) True G206575
TU280694 other upstream 3216878 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 3216878 20463703 ~ 20512144 (-) False LOC103040850

Expression Profile