RNA id: XM_022683675.1


Basic Information

Item Value
RNA id XM_022683675.1
length 4381
RNA type mRNA
GC content 0.51
exon number 17
gene id sh3tc2
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 17560259 ~ 17597003 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTAGTCCAGAGCCTATTGTGTTGAGAACTGGAATCACAACACTTGCTTTATAGAAGCccctgtcctgtctccgcccacCGGCATGCATGGACACTACTGACCAGCCCACACACTCCAGCATGCCAGCAGCAAAATGCTCTTTGTCCATTACAAACAGAGGCTgtccagaaagagagagagagagagagacaggacggacgagagagagagagagagagagagacagggaaatAGACAGATGTAGGGGGTACATACATTAATATGTGGCGTTTAATCCAGAAAATATGAAGATATGCACATGTATGGGCTAAGAGCATACAGGACGAAAGACATAGAGGACAGGAAGActcacaaaaagagagagagagagatagaaaaagagaaagagcgtCCATCCCGGTGGTTAATAGCCAGTGCAGTTTAAGTGGATGCCTCTCCGAGTCTGGACCATCGATTTAAAGAAGTACAGCAGCGTCTCGTCCTCATGATGTCCTGCTGCTGCCGTCCACCTCCGTGCCTGAGAAACTGCTTCTTGTTTTCAGACATATCGACCGCTGAGCTCGATGCCTTATGGAACGAGCCCCCGTACACACTAACGGGAGCCAATGAGCTATTTCCAGGAAATGATGTCATGGCCACTGGAAGTGATGAGGAAGTGGAGACGGAAGCTGAGGTGGAGACAGATGGGATCACTGGTGAGAGTTACTGGAGGAAGAGGGAGGCGTTTAACGGCAGCAGCGTCTCTCTCGCCGTAGGAGAACGCTTCTCTTCAGATGTGATTCTGGTGTTCAGTGGAAAGAGGAGGTCCAGTATTGAGCCTGATACTCACCTGCAGGAGGCGCTACGGACCCGGCTAAGAGTCGTGGAGAGCAACAGCCAAGATGTCATCCAGCTATTTAAGgaTCTGTCAGCGCGTCTGGTTTCAGTACATGCTGAAAAAGACTGCTTCGTTATCACCTTTAAAACTGTGGAGGAAATCTGGAAGTTCTCCACTTACCTGGCTCTGGGGTATGTGGCGAGGTGTCTGGAGAACTTCCTGTGTGATCAGTCGTTCTGGCTGGACCCTGTGCTGCTCAgtgatgtggagatctgtgtgacagTGGATGAGGAACACCTGGCCACGCTTTACCTGGGGCTCCTGCTGCAGGAGGGTTCATTCTTTGCTAAAGCTTTGCTGAACAGTGAGGGAacacaggaggaggaggaggagctggtcTACAGGAAGAATGACCTGGTGATGGTGAAGGATATTGGACAGCAGGGCGTGTGGGAGGGAACACTACTGTCTACTGGGCATCATGGCCTGGTGCCTGTTCACGCCATGCAGCCCCTGCCCTACCCTTTCTACCAGTGGTTTCTCAGAAAGTACCCAGGAAATGCAGGAGGAGCGATATCCACAAAAGGTCTATTCAACCAGCCTATGGtAACGGGCACCTGTGTGGCAGTGGTGGATCATTTCCCAATGGTTAAAGACGAGCTACACTTCAGTCAGGGAGATCTGATAGAGGTGGAGGGCTTTCTCATCAGCTCCCTGAACATCTTCATAGGAAGACACCATTCCAGTGGACACAGAGGATTTGTCCATAAGGCCCACGTGAAACCCGAGAGCGTAAAACCACTCAGACAATTGGTCTTTCTGAGTGAGGAGGAGAGGGTGGCTCTGTCGCAGTTTAACCCCTGCCATGACCAGAACCACAGAGACCTGCTGGACAAGCTCTTCTCCACCGACATCAGCACTGTGTACAGATTAGATAGACTGGAAGACTCGGATTTCACGTACATCAGAAACAGACCCAAGCAAGAACAAAAAAACCCAGTGGACGCCAGAAAGAGCACCATTTCTGAGAAGAGCGAAACCCCACCCTACCACTCCTCGCCACGTCCTTCCTTCTACTCTTCCCAAACTCACCTCGGCAGGGAGCAGGAGGCGTTCTCCTTCAGTTTGGACGACACCTTCCGAGAGATGGACGAATTTGAGGAGGATCCGCCAAACTACATGGACGACAGCGTCTGGGAAACGGAAGATGCGGAGTTTGTTGACCCCTTGTTGACTCTCTTGAACCTGGAGAACTTCCAGGACACTTTCCAGTCACTTTACGACCTCTCCTACTCCTTCCTCGACACGGTCTTTGGTGGTCTTCCGGAGGACGAGGTGCTGCTGCATCTGGAGAGTTTGCGGGAGGGGGCCAAGAAAGGCAGGATGCTGTGGGCTCACCGGAGAGCATGCTTCCTTCTGGGCAGGCTTTGCGCCAAGAAGCTCAAGTACTCGCAGGCTCGAGTATATTTTGAGGAGGCCTTGAAGGTTACTGTAGAGGGTTTTGACGATACACCTCTGCTGATCGCTTTGTACACTAACCTTACTGCCGTTTACCTGAAGCAAAAGATGGCGGATAAACTTCCGTATATACTGGAGAAAGCCAGTGCTCTTATTTTGTGCCTTCCTTGCCATGAATTCTGTTCTCTGGACGAATTTGAGTTGCTCAAGCCCATTTTACGCAAATCCGTAGTTGATAACGATAAGCACCTTGAGGCACGGACTTGCTACCTCATCCTTTGCCTCTTCCTGCAGTTGAGGAAGTTCGAGGAGGCCTTACCTTTTGTCGAGAGACTCCAATTCCTGActatcactctttctgctgAGGAAGAGAGGCCAATTGGACCAATAGACTTCAACTGGATGCTCTGCAGACTCTACAACAAGAAGTATCTTCCCTTTCTTGCTCTAGCCTCTCTAAGTCTGGACTCAGGTCAAGACCACTCTCTGGAAGACGCCTTCCAAAAGATTGATCTCTTCATCAAAAACTCATTCAGGTTGAATCCTCGATGGAGGGACGGCACCACTCTGCTTCCAGCCCAAGTCGTGGTCTACTTACAACAGGCGTTATCCATCGCCAACCAAGGAGAGGACCTGAAGACCCAAAGAGACTTGTGCCTCTGTCTTGCCAGTGTGTACCAACAGTATGGATCCTTGGAAAAAGCAGTACCCTTCGCTCGGCAGGCTGTGCAAACTGGGCGAAACATTAACGAAGAGGAGGGCTTCGAGGCGTTGGTGCTTTTGGCTTGGCTCCTGGTCCTTACAGGAGATCCAGAAGCTGCCCAATCTACTCTACAACCTCTCCTCAAATCCCTAAACGAAACAGACAGCCCAACCCAACGTGGTGTCGTCCATAACCTACTCGCACTTTGCCTTCGCAAGCAGGACAGCATTACAGAAGCAGCAAAGAACTTTCATTGTGCTCTGAAGATTTCGCAAGAGAATGGGAACAAGCGTAACGAAGCACTTGCCCTGGCTAACCTGGGCTGTTTGGGACTGTCGATAGGAGCTCCGATTCTTGCTAAGTGTTTCTTGGTCAGATCCTTAGACATCTTCCAGGGTCTCTCTGAGAGCCCGTCAGATGAGGAGCATGTTCAGGCTCTGCTGTGGTTGGGCAGGAGCTACAAGGACAGGGGAGGAAGTCAGGAGGTCAGGCTATGCTACGAGATGGGGCTACTGATTGCAATCGGCGCCAAGAACCTTCACAGTCAGATGGTGGTGGCGAAGGTGCTGAGCCGTCTGTACGCTGATCTGCTGCTGTACGGACAGTGCATCATTTACTACGAGCACTGCGTGGGTCTGTCCAGAGAGATGAAGGATAAACGACTGGAGGGAGAATACCTGGAGATCCTCAGCAACCTCTACCTCTCACTCAATACTGAGAAGTCCTCGAGGAAGTCTCTGGACTACACTAAGCAAAGCTTGAGGATTTCCATAGACCTGGGGAAGAGACAGGAGGAGTCGGAGACGTGGCTGCAAGTGGGACGTATCTACTACCTGATCCATGAAGATGAGCTGGCTGACATGTATCTCCAGGCAGCGGTGAAGACGGCCCTGAGGATGAATGATCCACGCTTTGCCATGAGTATTTATGAAGAGGCTGGGGACGTCTTCTTCAAAGGACACAGAAACCGCCTGGCTGCCCTGCCATTCTTTAGAGATGGAAGTCTGCCGTTTGCGAGGAGTATTAGGGATGTGCAGTCTGAGTTCAGGCTGTTGAGTAAACTCTCGGAGCTGCTGCTGAATGAAGGACAGTATGAAGAGGCTCTGCAGTATTCTACACTTGCGGTGCAGATCAGCGCCACCACTGGCGTGCGTCTGAATGAGAGGGTGGCGTATCACCGGCTGGCGTCGGTGTACTACAGTATGGATCAGTATGAGATGGCGGAGAACTACTATCTGAAGGCTCTGTCTCTGTCCCCCGCTGTACTAGAGCACCCTGCAGACGCCCAGTACTACACTAAAATCTACTGCAGACTCGCTGATATAACACTCCACAAACTGAAGGTGAGACACAGTCAGTGTAATTAAAACACTGATCATTTATCAACCATTATTTGATagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279669 lncRNA downstream 8118 17455279 ~ 17552141 (-) False G206203
TU279668 lncRNA downstream 8118 17482697 ~ 17552141 (-) True G206203
TU279613 lncRNA downstream 109614 17450332 ~ 17450645 (-) True G206172
TU279605 lncRNA downstream 139066 17420928 ~ 17421193 (-) True G206164
TU279594 lncRNA downstream 203793 17356113 ~ 17356466 (-) True G206154
TU279785 lncRNA upstream 254124 17843285 ~ 17843543 (-) True G206275
TU279786 lncRNA upstream 254813 17843974 ~ 17847846 (-) False LOC103033759
TU279787 lncRNA upstream 254813 17843974 ~ 17847846 (-) False LOC103033759
TU279788 lncRNA upstream 254813 17843974 ~ 17852191 (-) True LOC103033759
TU279775 lncRNA upstream 312718 17901879 ~ 17902564 (-) True G206271
XM_007232885.3 mRNA downstream 240790 17311933 ~ 17319469 (-) True LOC103041682
XM_022684330.1 mRNA downstream 259266 17259786 ~ 17300993 (-) True LOC103041988
XM_022683673.1 mRNA downstream 313434 17199473 ~ 17246825 (-) True LOC103024939
XM_022684329.1 mRNA downstream 360861 16953824 ~ 17199398 (-) True LOC103044170
XM_022683672.1 mRNA downstream 724760 16803521 ~ 16835499 (-) True clint1
XM_022684332.1 mRNA upstream 254805 17843966 ~ 17850998 (-) False LOC103033759
XM_022683684.1 mRNA upstream 264511 17853672 ~ 17865149 (-) True LOC103035473
XM_007240705.3 mRNA upstream 297131 17886292 ~ 17890574 (-) True prelid1
XM_007240706.3 mRNA upstream 302707 17891868 ~ 17898561 (-) True LOC103037035
XM_022683688.1 mRNA upstream 370799 17959960 ~ 17984069 (-) False ergic1
TU279578 other downstream 259302 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 929208 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 930692 16629501 ~ 16629567 (-) True trnav-aac_55
trnav-uac_3 other downstream 931546 16628641 ~ 16628713 (-) True trnav-uac_3
trnav-uac_2 other downstream 932742 16627445 ~ 16627517 (-) True trnav-uac_2
TU279905 other upstream 450545 18039706 ~ 18041913 (-) False LOC111195732
TU280287 other upstream 1249208 18838369 ~ 18838916 (-) True G206575
TU280694 other upstream 2874542 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 2874542 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 2874542 20463703 ~ 20512144 (-) False LOC103040850

Expression Profile