RNA id: XM_022683687.1


Basic Information

Item Value
RNA id XM_022683687.1
length 2300
RNA type mRNA
GC content 0.42
exon number 10
gene id ergic1
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 17959960 ~ 17984069 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAAAGAATCAGCGTTAGCCGCTTCTTCACCCAATAGGATTGTGCAAAGCGTCCTAAGAGGACGTCACGTCCGGTCAGTACTGCCGCCGGTAGGTGAAGCTGCGGCTCCGGTTCTCCGTTTTCCGCTTCAGCAGCGCCGCCGGTGAACCGACAGCATGACTTTCGATGTGCGGAGATTCGATATCTACAGGAAGGTGCCCAAAGACCTCACCCAGCCCACCTACACCGGAGCTTTCATCTCCATCTGCTGCTGCGTCTTCatgctcttcctcttcctctccgaGCTGACGGGATTCATCGCCACAGAAATAGTTAATGAGCTCTATGTTGATGATCCAGATAAAGACAGTGGAGGGAAGATTGAAGTGAGTTTAAACATCAGTTTGCCAAACTTACACTGTGATTtgGTGGGTTTGGATATTCAGGATGAGATGGGGCGTCATGAGGTCGGTCATATTGATAACTCTATGAAGGTGCCGCTGAACAGTGGATTCGGCTGCCGCTTCGAGGGAGAATTCACTATTAATAAAgTTCCTGGAAATTTCCACGTATCGACGCACAGTGCGACGGCGCAGCCGCAGAATCCTGATATGACCCACATCATTCATAAACTCGCCTTCGGAGAGAAGCTTCAGGTTCAGCACGTTCAGGGAGCTTTCAACGCCCTCGGGGGAGCCGACCGCCTGCAGTCTAACGctctggCGTCTCATGATTATATTCTGAAGATTGTTCCTACAGTCTATGAAGATTTATCAGGAAAGCAGAGGTTTTCCTATCAGTACACCGTGGCCAATAAGGAGTACGTGGCCTACAGTCACACGGGACGGATCATCCCCGCCATCTGGTTCCGATACGATCTGAGTCCAATCACAGTGAAGTACACCGAGAGGAGACAGCCAATCTACCGCTTCATTACAACCATCTGTGCGATTATTGGTGGGACGTTTACCGTGGCCGGGATTATTGACTCCTGTATATTTACAGCCTCTGAGGCCTGGAAGAAAATCCAGATCGGAAAAATGTCTTGATTTCACCTCGTTTACCGTATTTATACCACAGTGACTCTCCACATTTACACTGAACCAAGTTTCCCCTTTAATGTTCCATTCCATCGTTTCACACGACCTGCTGGACCTCCGAGACTCTTCAGGTCTAAACTAAAAAGTTACTGAAATGAAGAACAGAATGATTTTCCACTTTGTTGCCATATTTTTGTACATGTTATGAAAACGTGTTTTTGTAAATTTCTCAGTATGAGCGTTTCTGTTCAGCTCTGAatgttaagtgtatttaaaacacaaattcTATGTATTTCTTtcacaaaaagtgtttttttcagaaTCTGCCAGTATATTAAGACCTGaagattaaaacataaaacttaAACAGGACACATATAGATATTAAGTCATCATGACTGTTACTCGGGTTCTGTAAATTAACCAGATTACAGTAAACAAAGAGGATTTTAATCAGTGGAAACGCTGAACTGTTTAAAGCATTGATGACTTTACTGTTCACTTGGCTGCAGAATTGGCTTGAAGTGccttaaaagtgttttaaaagttcatGAAGATAAAATTACTCAAGAGCTTATAGAATATTATAGAGGGTGGCTCCAGCTTGGcggtttttttttctcgttcTTTCTTTTATGGTTACTGGTGTTTAGTTTTTTCTGTTGGGAATGAGTTATTATGGGAAAGCTCTTATTACCAAAGCGTTTCTGAATGAaggtttttttatgtgtattttactttgtaaagatgttttttttttgcgctgtAGCTGTTTAATTTCTGCTCAGTTCATACAGTTTAAAAGTTGCTTTTTTAGatgtatttagtttagtttcctGCCTGTTTTACCCTCAGCCCAAATCACTGTTACTGACTCTGAAGGTTCCAGCAGAACTTTTCCTTCTGTTCTGGTTAAATATCAGGTTCATGTTTTGAACGAGTGCCGCTGGTTAAGCTGCTTAACAcagaaaacaatttaaattcagtgtttttaaccaGAAGCCTGAAACACTTGAAGGTACAAACAttcaaaactaaaactaaacagcTGAGACAGTTCAGTCTGATTTGTTGGTAAAATCTGTTGCCCTGTGGATTTTCGCCCGGGTTTCTGCCACTGTTTCATTTACTCTGATCAGATAAAATTACACAAACATGTTTCTAATTTCTGTTTGGTCATTCCTGTTTCTCCTCCACTTCTTTTTATCACTTTCTGATTCAAGTGAATCGAGCAAGAACATATAAAATCAACAGAaattaaaatccatttttactgctgtg

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20365 ERGIC1; endoplasmic reticulum-Golgi intermediate compartment protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279775 lncRNA downstream 57396 17901879 ~ 17902564 (-) True G206271
TU279788 lncRNA downstream 107769 17843974 ~ 17852191 (-) True LOC103033759
TU279786 lncRNA downstream 112114 17843974 ~ 17847846 (-) False LOC103033759
TU279787 lncRNA downstream 112114 17843974 ~ 17847846 (-) False LOC103033759
TU279785 lncRNA downstream 116417 17843285 ~ 17843543 (-) True G206275
TU279900 lncRNA upstream 50071 18034140 ~ 18039149 (-) True G206348
XR_002651846.1 lncRNA upstream 129649 18113718 ~ 18122487 (-) True LOC111195818
XR_001518320.2 lncRNA upstream 199358 18183427 ~ 18186787 (-) False LOC103029928
XR_001518321.2 lncRNA upstream 199358 18183427 ~ 18186787 (-) True LOC103029928
TU279928 lncRNA upstream 199358 18183427 ~ 18186761 (-) False LOC103029928
XM_007240706.3 mRNA downstream 61399 17891868 ~ 17898561 (-) True LOC103037035
XM_007240705.3 mRNA downstream 69386 17886292 ~ 17890574 (-) True prelid1
XM_022683684.1 mRNA downstream 94811 17853672 ~ 17865149 (-) True LOC103035473
XM_022684332.1 mRNA downstream 108962 17843966 ~ 17850998 (-) False LOC103033759
XM_022683674.1 mRNA downstream 370800 17560259 ~ 17589160 (-) True sh3tc2
XM_022683691.1 mRNA upstream 55606 18039675 ~ 18041939 (-) True LOC111195732
XM_022683693.1 mRNA upstream 91986 18076055 ~ 18079482 (-) True nkx1-1
XM_022683694.1 mRNA upstream 181919 18165988 ~ 18176115 (-) True ccdc142
XM_007228446.3 mRNA upstream 192638 18176707 ~ 18180522 (-) False slbp
XM_007228445.3 mRNA upstream 192638 18176707 ~ 18180522 (-) True slbp
TU279578 other downstream 659003 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 1328909 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 1330393 16629501 ~ 16629567 (-) True trnav-aac_55
trnav-uac_3 other downstream 1331247 16628641 ~ 16628713 (-) True trnav-uac_3
trnav-uac_2 other downstream 1332443 16627445 ~ 16627517 (-) True trnav-uac_2
TU279905 other upstream 55637 18039706 ~ 18041913 (-) False LOC111195732
TU280287 other upstream 854300 18838369 ~ 18838916 (-) True G206575
TU280694 other upstream 2479634 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 2479634 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 2479634 20463703 ~ 20512144 (-) False LOC103040850

Expression Profile