RNA id: XM_022683731.1


Basic Information

Item Value
RNA id XM_022683731.1
length 2000
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC103043211
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20180310 ~ 20188753 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACATGCTCCTCAGTGACGACAGGATTTTAAGGGGAACTGCTggtttggtggtggtggtggttactGAGGCTCAGCAGATCAGGGGACAATGGTATTAATTTACTGGCGTTTGTAAAAGatttGAGTCCCTAAAAAGATCAGTGTGCTGTGGTGGAGTGTTCTCTTTTGGGATTGTATACAGCAGACTCTGTCACAGACAGGGGAAATGTCCAGCACAGCCATGAAGAAAAAGGTGTTGCTGATGGGAAAGAGTGGGTCGGGAAAGACCAGCATGAGATCAATCATCTTCGCCAATTATATTGCCAGAGACACTCGGCGACTGGGAGCCACAATTGATGTGGAGCACTCCCATGTGCGTTTCCTTGGCAATCTGGTTCTAAACTTATGGGATTGTGGTGGACAGGACACTTTCATGGAGAACTACTTCACCAGTCAGAGAGATAATATTTTCCGCAACGTTGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGAGAGTTAGAGAAAGACATGCATTACTACCAGTCCTGTTTGGAAGCAATCCTTCAGAATTCACCTGATGCTAAAGTCTTCTGTCTAGTTCACAAAATGGACCTTGTTCAGGAGGATCAGAGAGACCTGATATTTAAAGAGCGTGAAGAGGACCTGAAGAGGCTGTCCCGCCCATTGGCGTGTACCTGCTTCAGGACCTCTATTTGGGATGAGACACTTTATAAGGCATGGTCAAGCATTGTCtatcagctcatcccaaatgtgCAGCAGCTGGAGTCCAACTTGAGGAATTTTGCCCAGATCATCGAGGCAGATGaggtgctgctttttgagagaGCCACTTTCCTGGTGATCTCACACTATCAGTGCAAGGAGCAGCGAGATGCTCATCGCTTTGAGAAGATCAGCAACATTATTAAACAGTTCAAGCTGAGCTGCAGTAAGCTGGCCGCCTCCTTCCAGAGCATGGAAGTGCGCAACTCCAACTTTGCGGCTTTCATTGACGTGTTCACCTCCAACACCTATGTGATGGTGATCATGTCTGACCCCTCCATACcCTCTGCTGCCACCCTCATCAACATTCGCAATGCCAGGAAGCATTTTGAGAAGCTAGAGAGGGTGGACGGCCACAAGCACAGCTTGCACATGCGCATGCGCTAGACATCTGATCCTGCCTACAGGAGCTCTCCTTCCTCAGAGGGCCTGCGCGCCGGGGAAACGGCACTCTGGGGAAATTCCTCCTATCTGCTGACTTCACTGCATCCAGGGTGTTTTGTAGAGACTCTTTCATCCCTCTTAAGATCAAAGACTTTTTCCCGGCTTTCTATCTGGAACTCTTTGAACATAACGCTGGATGGGACTGAAGAAGGtggtataaatacaaaaaaaaaaaaattatgactaAGTGGTGATAAAATACGTTTAGGGATGTAACGGtataaaaacagatataaaaaataatgttttgaaggggaaaacacattttaaacatacgTCATCCCCTTAACACGTAAATAGTGCCATACAGTAACCTGTATTCAAACACTTCACACAGAAGAAGAAcacatcaaatatatatattttttcctcttttttctggttttgtttagtttttcctCTGTTCAGTTTTAATGGATTTGCATTGTTTGGGTTCGAGTGTTgcgtgtgctgctgctgcttgccACAGTACAGGCTATTGTACAATatctacaaaatatatatatatatatatataaatacaaaagatgACAGTGACACGTGTTTATGGAAAATCTGCAAGGCTAaactgttgtttaaaaaaaaaaaagcaaaaaaaaaaaaaaaaacttggtcaCAGTCCTTCTGAAGTAAAACACGTGGACACATCTCTTCTTTTATATACACAAAGGATATACTGTTTGTATTTCCTGTATTTATTATCTCGGttgattgcaaaaaaaaaaaaaagaaataaaatcaaaggaaGTATGAATGTCCTCTGAAATAAAACGCTCTTTTCTTCATA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16185 RRAGA_B; Ras-related GTP-binding protein A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280575 lncRNA downstream 93817 20086177 ~ 20086493 (-) True G206784
TU280571 lncRNA downstream 105620 20074425 ~ 20074690 (-) True G206782
TU280560 lncRNA downstream 185508 19925031 ~ 19994802 (-) False LOC103046671
TU280552 lncRNA downstream 212588 19957477 ~ 19967722 (-) False LOC103046056
TU280559 lncRNA downstream 229203 19925031 ~ 19951107 (-) True LOC103046671
TU280583 lncRNA upstream 1284 20190037 ~ 20193718 (-) False LOC103040644
TU280584 lncRNA upstream 1284 20190037 ~ 20274905 (-) False LOC103040644
TU280585 lncRNA upstream 1284 20190037 ~ 20196861 (-) False LOC103040644
TU280587 lncRNA upstream 1284 20190037 ~ 20193718 (-) False LOC103040644
TU280668 lncRNA upstream 176161 20364914 ~ 20372471 (-) True G206843
XM_007228400.3 mRNA downstream 39251 20125680 ~ 20141059 (-) False LOC103043510
XM_022683730.1 mRNA downstream 45470 20123147 ~ 20134840 (-) True LOC103043510
XM_007228404.3 mRNA downstream 75470 20099499 ~ 20104840 (-) True vamp7
XM_007228405.3 mRNA downstream 95850 20077520 ~ 20084460 (-) True LOC103045046
XM_007228407.3 mRNA downstream 202452 19968907 ~ 19977858 (-) True prps1
XM_022683733.1 mRNA upstream 7886 20196639 ~ 20238734 (-) False LOC103040644
XM_022683732.1 mRNA upstream 7886 20196639 ~ 20238734 (-) True LOC103040644
XM_007228398.2 mRNA upstream 51114 20239867 ~ 20244489 (-) True cysltr1
XM_022683735.1 mRNA upstream 184133 20372886 ~ 20382010 (-) True itm2a
XM_022683736.1 mRNA upstream 244772 20433525 ~ 20441496 (-) True LOC103041461
TU280287 other downstream 1341394 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 2138397 18039706 ~ 18041913 (-) False LOC111195732
TU279578 other downstream 2879353 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 3549259 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 3550743 16629501 ~ 16629567 (-) True trnav-aac_55
TU280694 other upstream 274950 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 274950 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 274950 20463703 ~ 20512144 (-) False LOC103040850
XR_002651782.1 other upstream 2721291 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 2721920 22910673 ~ 22956024 (-) False LOC103035944

Expression Profile