RNA id: XM_022683735.1


Basic Information

Item Value
RNA id XM_022683735.1
length 1768
RNA type mRNA
GC content 0.50
exon number 6
gene id itm2a
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20372886 ~ 20382010 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGAAACGGAAGTCGATCCCGTGGAATTGCAAACAGAAGTGCGTCACTGAAGCTGCGGAGCGGagagttttagtgttttctgCAGAAAATCGGCCGCAGAGGAGAAAATAACCCCCGGTTCTGCTTCAGGGATCAGAGATTAATCTGACAGCATGGTGAAGATCGCCTTTAACTCCGCTCTGGCGCAGAAAGCTCTGGGGAAAGAGGCGCTGGTGGCGGAGAAGGATCCAGAGACGGGCTCCGTCTACAGTAACGAGAGCTCCACAGGCCGCTGTCTGCTCACCCTGCTGGGTCTGGCCTTTATCTTGTCCGGGCTCATCGTTGGCGGTGCCTGTGTGTACCGCTATTTCACCCCTAAGAAACTGTACCACGGCTCCATGCAGTTCACTGAGCTGGACAGTGCCGATATGCCGGTGGACGTGGAGGCCCGCGAGCCGTACTACCTGCCCCGCATCGACGAGGACGTGGAGATCCGCGATAACGTGGCCATCATTAACGTTCCTGCCCCTCGCTTCGGAGAAGGAGATCCAGCTTACATTCTGCACGACTTTAAGAGGAAGCAGACTGCGTACCTGGACCTGACCCTCAGGACCTGCTTCGTGATTCCTCTCAACACCTCGGTGGTCATGCCTCCTCAGGACCTCATGGATCTCTTCATGCAGCTCATGTCCGGCTCCTACAAGACGTACTTGGTGCATGAGGATCTGGTGGTGACCGAACGCATCGATGACCTCGCCCCTCTGGGTTACTACATTTACAACCTGTGTGAGGGCAAAGCCACGTACAAGATGCAGCGCCGCAGTGAGATTATGGGCATTCAGAAGCGCTCGGTGGAGGAGTGCTTCAAAATCCGCCACTTCGAGAACAAGTTCGTTACTGAAACCAAGATCTGCCGAGCCTGAGCGAGCAGGAAGTCAGGAGGGGACAGACACGACGAGGACGGGGGAgtctcctccccctccccccgcCGTCGCAGGGGAGGGGGAGGTGAGGTGAAGAGAGCTGAgaaagggaggaggaggagagaggaatggagggagggagggctgAGAGGAAAGGGCCTGTCTTCCAACTCCTGCTGTAGAGCTTAGCTTAGGGTGTTGTTTTGTATTACCGAGGAAAAGCAGActtttctcttccttttcttcttcttctccttcttcttcttctccttcttcttcttctccttctcatTATTGTCCTTATTAGGGCCTGTATTGATGTAGATCTCTTAAATCTCACATTTCATGTGATTCTCACATTTCAGATTCTCTTACAGATTTGCCTCCATCCACTATAAGATGATTGATTCCCTCTATATGCAGCTGCTTTAATATACAGCTGCTATAACCTGTAAACGTTTATTTCAGTgctttgatttggtttggtttagttttacGTCTTCTGTGCTTCTCCTAGTCAAGGTTTTTGTGTTCCATCCTAAATCCTGAAGGTCTTAAGCCACACATATTTCAACCTCGATGCATTTTCACCTCAATGCTTTAATGCTTTGTCTTGGTGGAAGTGTGAGTAAGAGCATTCCTACTGAATCAAAACCTGACCAAGTGATCAATTGACCAAGCGACCAAGCTTTCAGtctagcgtgtgtgtgtatgtgtgtgtgttagtcctCGAATATCAAatttcctgtttttaatcaccacTCAGTGTACAAGTACTATTATTACTACCCCTGTGATGTCTAGCGCACTGATGGCCTGTGgtgtttaagcttttttttttttttttttttctttagtcccACTTT

Function

GO: NA

KEGG:

id description
K18241 ITM2A; integral membrane protein 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280668 lncRNA downstream 415 20364914 ~ 20372471 (-) True G206843
TU280670 lncRNA downstream 415 20364914 ~ 20372471 (-) False G206843
TU280666 lncRNA downstream 415 20370888 ~ 20372471 (-) False G206843
TU280669 lncRNA downstream 415 20370888 ~ 20372471 (-) False G206843
TU280584 lncRNA downstream 97981 20190037 ~ 20274905 (-) False LOC103040644
TU280685 lncRNA upstream 36306 20418316 ~ 20418553 (-) True G206856
TU280688 lncRNA upstream 151570 20533580 ~ 20537400 (-) True G206859
TU280769 lncRNA upstream 295443 20677453 ~ 20743301 (-) False LOC103039395
TU280774 lncRNA upstream 335939 20717949 ~ 20725371 (-) True G206912
TU280768 lncRNA upstream 359049 20741059 ~ 20743301 (-) False LOC103039395
XM_007228398.2 mRNA downstream 128397 20239867 ~ 20244489 (-) True cysltr1
XM_022683733.1 mRNA downstream 134152 20196639 ~ 20238734 (-) False LOC103040644
XM_022683732.1 mRNA downstream 134152 20196639 ~ 20238734 (-) True LOC103040644
XM_022683731.1 mRNA downstream 184133 20180310 ~ 20188753 (-) True LOC103043211
XM_007228400.3 mRNA downstream 231827 20125680 ~ 20141059 (-) False LOC103043510
XM_022683736.1 mRNA upstream 51515 20433525 ~ 20441496 (-) True LOC103041461
XM_007228393.3 mRNA upstream 125612 20507622 ~ 20512287 (-) True LOC103040850
XM_022684333.1 mRNA upstream 361142 20743152 ~ 20782984 (-) True LOC103039395
XM_022683742.1 mRNA upstream 404004 20786014 ~ 20800527 (-) True hdx
XM_022683745.1 mRNA upstream 598745 20980755 ~ 21355637 (-) True tenm1
TU280287 other downstream 1533970 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 2330973 18039706 ~ 18041913 (-) False LOC111195732
TU279578 other downstream 3071929 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 3741835 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 3743319 16629501 ~ 16629567 (-) True trnav-aac_55
TU280694 other upstream 81693 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 81693 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 81693 20463703 ~ 20512144 (-) False LOC103040850
XR_002651782.1 other upstream 2528034 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 2528663 22910673 ~ 22956024 (-) False LOC103035944

Expression Profile