RNA id: XM_022683736.1


Basic Information

Item Value
RNA id XM_022683736.1
length 1623
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC103041461
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20433525 ~ 20441496 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagagagaaagagaaatatatatagagagagagaggatcgCTCTCCCCCGCTGCTCGCTGTTCCCCCGCCGCCGCGCTGAACGCGGAAAGGAAAAAACGCGCTCGGTAGATGAAAGGTCAATTTActcgttaccaaaaataaaaaaatgacgtCACTAGACTTGTACCACAACCGACGGAGAACagagtgtattaaaaaaaagagtcagaTCTGAGCACGAGCTGCCCAACGCCTCTGACGTCGGAGGAGGCGGGGCCGCGGCGGCGTCAGTGCTTGCGTCAGCGCGCCGTAGGCGGAAATGGCGTGTTAGCCGTTGACAACCAGGGAAAACCAAAACAACAGTCAGAGAGAGgctgttagctaagctaagctaagctaagctaagccaGCTGCTGTATTAATAAACAGAGCGCAGTGTTAAACCGTAGTGTTTATCTGTCTGCTCGAGATGTCCAGTATGGAGAAGCATCTTTTCAACCTCAAGTTTGCTGCCAAAGAACTGGAAAGGAATGCAAAGAAATGTGACAAAGAGGAAAAGGCTGAAAAGGCTAAAGTGAAAAAGGCTATCCAGAAAGGGAATACGGAAGTAGCACGGATACATGCTGAAAATGCAATCCGGCAGAAGAACCAATCTATTAACTTTTTAAGGATGAGTGCTCGCGTGGATGCAGTGGCTGCCCGTGTGCAAACTGCAGTAACAACGAATAAGGTCACCAAATCCATGGGAGGTGTGGTTAAGTCAATGGATGCCACTCTGAAAAGCATGAACTTGGAAAAGATATCGGCTCTCATGGACAAGTTTGAGAGTCAGTTTGAAACTCTGGATGTTCAGACAGCACAGATGGAAGACACTATGGGTAACACCACCACATTAACCACACCACAGAACGAAGTGGAGTCTCTAATGCATGAGATGGCAGATGAAGCTGGGTTGGATCTGAACATGGAGCTTCCTCAAGAACAGACAGGCTCTATTAGCACTAGCGTAGCATCGGCTGAGCAGGATGAACTCTCTCAGCGGCTGGCCAGACTGCGGGACCAAATCTAGAGTTGCATCACTGCATGTACATCTGTTAACTGTCTGTGAATTGATGACGGGGTGAGTGTGTCTTCAGCCCTGCAGAAAAGGACTTGTTCCTATAAAGATTAAAGGCTCTGTGCATGTGATCATCATGCTTTTAGGTGCCTCTCGGTGGCGCTGCTGAGCAGGAACACTCATTTTGCTCTGACAGGAAGGAGAAAAGCTGGCTGGGTCTTAATGTCATATCTTTGCCTAGAAGATTAAGGCTGTTTAGCTGTATAGGGATGTGCAATGGAAACTATAACGTGCATTTGGCATGCAGTTGCCctgacacatttttttaaagcgtGTGCTTTCAGAATGATTTATGGTGgagcattatttatatatttatttatttaatatgagAAGAAGGTCTGGATGTGTTTTCTCTGAATTTGCTGCATGTTAACACATCATAAGGCCCTTAATGCACTTTATATTAACTGCTCTATAAGTGTGTGCACCTGGCTAATACCACAATGAGCCACATTGATCTTGGACTGGTCCATTGTCCTTTTTGTCAAGTAAGcagaataaaaactatatatccA

Function

GO: NA

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280685 lncRNA downstream 14972 20418316 ~ 20418553 (-) True G206856
TU280668 lncRNA downstream 61054 20364914 ~ 20372471 (-) True G206843
TU280670 lncRNA downstream 61054 20364914 ~ 20372471 (-) False G206843
TU280666 lncRNA downstream 61054 20370888 ~ 20372471 (-) False G206843
TU280669 lncRNA downstream 61054 20370888 ~ 20372471 (-) False G206843
TU280688 lncRNA upstream 92084 20533580 ~ 20537400 (-) True G206859
TU280769 lncRNA upstream 235957 20677453 ~ 20743301 (-) False LOC103039395
TU280774 lncRNA upstream 276453 20717949 ~ 20725371 (-) True G206912
TU280768 lncRNA upstream 299563 20741059 ~ 20743301 (-) False LOC103039395
TU280770 lncRNA upstream 299563 20741059 ~ 20743301 (-) False LOC103039395
XM_022683735.1 mRNA downstream 51515 20372886 ~ 20382010 (-) True itm2a
XM_007228398.2 mRNA downstream 189036 20239867 ~ 20244489 (-) True cysltr1
XM_022683733.1 mRNA downstream 194791 20196639 ~ 20238734 (-) False LOC103040644
XM_022683732.1 mRNA downstream 194791 20196639 ~ 20238734 (-) True LOC103040644
XM_022683731.1 mRNA downstream 244772 20180310 ~ 20188753 (-) True LOC103043211
XM_007228393.3 mRNA upstream 66126 20507622 ~ 20512287 (-) True LOC103040850
XM_022684333.1 mRNA upstream 301656 20743152 ~ 20782984 (-) True LOC103039395
XM_022683742.1 mRNA upstream 344518 20786014 ~ 20800527 (-) True hdx
XM_022683745.1 mRNA upstream 539259 20980755 ~ 21355637 (-) True tenm1
XM_015601738.2 mRNA upstream 1089264 21530760 ~ 21599718 (-) False LOC103037071
TU280287 other downstream 1594609 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 2391612 18039706 ~ 18041913 (-) False LOC111195732
TU279578 other downstream 3132568 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 3802474 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 3803958 16629501 ~ 16629567 (-) True trnav-aac_55
TU280694 other upstream 22207 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 22207 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 22207 20463703 ~ 20512144 (-) False LOC103040850
XR_002651782.1 other upstream 2468548 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 2469177 22910673 ~ 22956024 (-) False LOC103035944

Expression Profile