RNA id: XM_022683779.1


Basic Information

Item Value
RNA id XM_022683779.1
length 3150
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC103030249
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 22407392 ~ 22452031 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGAGAGAGGATGGACTGAGCGGAGGAGCAGGTTGTCACTCTGAGAGGAGTAGCTGGAGGGAGAGCAGCGCTGCTGGGGGATTAAAACTGCTTCTGAAGTTAAACTGatTCAGAATGCTGAACACACGATGGATGCTCTGGTTTATCTGAGGTTGCTGCGAGCCTGCGACCCCCCAGCTCTCCCCCACCACCCACGCCCTCCTCGCTCCAGGGCGTCTGACCCAACGGCGTCTGGCTCCTGGCGAACAGAGTAGAGCTCTTCTCCACACTCACAGGTGAAAGGTGACCCCCCCTGTGGAAGTATGCCTGGATGGAGGTCTCAGTGGCGTCTGGTGCTGCTCAACCTGCTGACCTGTGGCCTGGAGATCTGCGTTGCAGCCGGAATCACCTATGTGCCCCCACTGCTGCTGGAGGCCGGCGTGGAGGAAAAGTACATGACCATGGTGCTGGGTATTGGTCCTGTCCTGGGTCTCCTTTTCATCCCTCTCATTGGCTCGGCCAGTGACCACTGTAACAGCAGCTATGGCCGCCGTCGTCCCTTCATCTGGCTGCTGTCTCTGGGCGTTCTCCTCGCTCTGCTTATCATTCCCCACGCTGATGTTTTGGCGTCCCACCTCAGCTGGGGCACTGGCCTCCCCATCCAGGCTCTCCAGGTGGGGCTGCTTATCCTGGGCGTGGGGCTGCTGGACTTTTGTGGTCAGGTGTGCTTCACACCGCTGGAGGCTCTGCTGTCTGATCTGTATCGAGAGCGAGAGGACTGCGCTCAGGCCTTCGCCATGTTCTCGTTCATGGTGAGTCTCGGCGGCTGTGTGGGCTACCTGCTGCCCGCGCTGGACTGGAGCGGCGGCCTCCTGGCCTATTATCTGGGAGGACAGGCCGAGTGTCTCTTCAgcctcctcatcctcatcttcatcatcagcGTGCTGGTCACCATGAAGGTGTCGGAGGAGCACTCGTGCAGGCCGCTGGTTCTGGAGCCCGGGCCGGTGGAAACCGGGCAGTGCGGTCCGCGCTCCTGCTGCTACGTGCTACAGTGTAAACTCAGGCTGCTGAAGTCTGGACCTCTGCTGTGCTTGCTCAGGACTTGCTGGTCCATGACCCCGGCCATCTACAGGAGTTACTGCCACATCCCACGGGTCATGAAGCAGCTGTGTGTGGCACAGCTGTGCAGCTGGATGGCCGTCATGTCCTTCATGCTCTTCTATACGGACTTTGTGGGAGAGGGACTGTATGAAGGAGTGCCCAGTGCTGCCCCGGGCACTGTGCTCAGACAGAGATATGATGAAGGCATCCGAATGGGCAGTCTGGGACTGTTCCTGCAATGTGCTACCTCAACCTTCTTCTCGCTGGTCATGAGCCGTCTGGTGCGCGTGTTTGGCTCCAGGAAGATCTACCTGAGCAGCATGGTGTCCTTCACAGCTTCTGCATTGGTCATCTGTCTGTCCAAGAGTGTGCTGCTGGTCACGGCCATGTCTGCCCTCACTGGGTTCGCCTACGCCACCCTACAGACTCTGCCATACACCCTTACCTGCCACTACcacaaagagaaagagGTATACATGCAAATCAGCAAAACCAAAAAGACGCACAGAAGTGAGATGAGCTCCTCTCATGAAGCTGTATGTCTCACAGTGGATGATGACACGGGTGATCTGAACCACAAGAGTGGTCATACGAATGGTCATGCCTACTTCAAGCAGGAACATTACCCCTCTCAGCACAGTCAGAATGGTGCTCCTGCTGGTCTGGGGTCAGACGATTTTGAAAAACGAGGCGTCGGCTTGGATTTTGCCATTCTGGACAGCACCTTTCTGCTCTCTCAGGTCTTCCCCACTCTCTTCATGGGCATGATTGTCCAGTTCACACAGTCCGTCACTGCCTACGTTGCCTTTTCTGCCATTTTTGGTGCAATCGGTGTCTATTTTGCCACAGATATAATCTTCGACCAAAAGGATCTTAAATCCTGAGAGATCCTTAAATCCATCAGAGGGAGATTGCACTGGGCTTCCAGGAAACTGAAAGTGGaatggacctgtttttcctctgTCTGCAGTTCAAACCCACAAAAGAGAATTATCCTTCATCATCACACCATAGTCAAATTAGGCAAAATCTCTTGCTGCATTGTTTTCTCTGTTTAGTTAATTGCTTTCATTTTCTCAGATGCATGTTTCCTTATGTTTCCTTATTCTTGAACTCTTCATCTTGGGATAACCTACACAATATGAGCTCAGTAGGCCGAGGAAAGCAGGCCCAGATGGCGTCACagtgctctggaaaaaatgccTAGCACTCATCAAGTTCACTCCATTCTGATcaggttgattttttttttctgtcatagTTTATTTTTCATCACATTTACGTACAAATTATGCATTGTGCAAGCAGACCCACTTCACCAACATGAGTGAATGAAACTCGGACCAAGGGACGCATCAGTCAGATGTGATGTGCTATGACGCGAATGCATTTTATGTTGTGTAAAGAAAGATTTAGAAAGTaactattttattgtgtatatttttgtatattgataatatatataaatatatttatatcccTATGGGAATTGTTTTATGCAACCTGCTTAGTGAGGTCATGtgtatttatgttaaaaaaaaaaaacattgttttttgaaTGAACTgcatttgtgtttatgtggtttgAGTAAGCAGCGCTAATATCCAAATACAGacagaatctaaaaaaaaagacaatctaGATTATTTTTATACAGAGATCTGAATTAAACTACTCTTTACACTGTAGAATCACTTTGTGCCCCAAGTGATCATAAACGTGTATGAAGTGACTATAGACGGATGTGGATGTGAATTTGTAGAAAGATGTCCAATCATTTTTACAATAGAGGGTACGCAAAAAAATGTCACAATTGGGGGGAGGAGTCACTGCAGACACGCCCACCGAGAGGCACACCAGCTTTCAGTGTGaattctattaaaataattgcTGCAATTCTTAGAACTAACTGGAATCCAGGCACTGAAACATGTTCACTTTTAGGTTTTACTCAATCCAGGTCTTGGGATACAACTGTCCTGCTTATTTTAGTGTGTCCTGCTGGATCACTATCAAAGGATCAGGTACCACTTTAAGGAtcaggtaccactttaaaataacactc

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281246 lncRNA downstream 863 22404280 ~ 22406529 (-) True G207272
TU281247 lncRNA downstream 863 22404583 ~ 22406529 (-) False G207272
TU281258 lncRNA downstream 4609 22402373 ~ 22402783 (-) True G207282
TU281250 lncRNA downstream 29754 22377120 ~ 22377638 (-) True G207275
TU281242 lncRNA downstream 30705 22373511 ~ 22376687 (-) True G207269
TU281296 lncRNA upstream 147620 22582766 ~ 22583801 (-) True G207315
TU281316 lncRNA upstream 253594 22688740 ~ 22689592 (-) True G207333
TU281552 lncRNA upstream 272288 22707434 ~ 22708157 (-) False G207505
TU281553 lncRNA upstream 272288 22707434 ~ 22709445 (-) True G207505
TU281554 lncRNA upstream 276731 22711877 ~ 22735025 (-) True G207506
XM_007228463.2 mRNA downstream 6877 22394040 ~ 22400515 (-) True fgf6
XM_007228359.3 mRNA downstream 15320 22389756 ~ 22392072 (-) True LOC103030564
XM_007228362.3 mRNA downstream 287255 22082541 ~ 22120137 (-) True kdm7a
XM_022683773.1 mRNA downstream 331353 22053224 ~ 22076039 (-) False cnot1
XM_007228357.3 mRNA upstream 24900 22460046 ~ 22477263 (-) True c24h12orf4
XM_007228349.3 mRNA upstream 155886 22591032 ~ 22601463 (-) False LOC103027701
XM_022683785.1 mRNA upstream 155886 22591032 ~ 22601442 (-) True LOC103027701
XM_007228348.3 mRNA upstream 167480 22602626 ~ 22646944 (-) False LOC103027200
XM_007228347.3 mRNA upstream 167480 22602626 ~ 22646944 (-) True LOC103027200
TU280694 other downstream 1895248 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other downstream 1895248 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other downstream 1895248 20463703 ~ 20512144 (-) False LOC103040850
TU280287 other downstream 3568476 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 4365479 18039706 ~ 18041913 (-) False LOC111195732
XR_002651782.1 other upstream 474898 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 475527 22910673 ~ 22956024 (-) False LOC103035944
XR_002651783.1 other upstream 789459 23224605 ~ 23225055 (-) True LOC111195748
XR_452612.3 other upstream 1503779 23938925 ~ 24020314 (-) False dnajc24
XR_002651784.1 other upstream 1521200 23956346 ~ 24020314 (-) False dnajc24

Expression Profile