RNA id: XM_022683890.1


Basic Information

Item Value
RNA id XM_022683890.1
length 1742
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC103040521
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25681230 ~ 25685611 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTTTACCTCCTGATAGCCCTCAGTGTCCTCCATCCTGCTCATCTTCCCTAATAAACATGAAGTTATCATTATTCTCCATGTGGGCAGCAGCCCTGCTCCTCACCTTCTCCTCAGAGtgtgtgagtgggaagcagtgtgtgtgtgagctgaagAACGCAGTGCGTCCGTTCCCCACGGCTCAGCTGGACAACATCCACACTGCAGCCTCCGAATGCAACACCAGCATCACTTCAAAAcagATGCTGGAGGTGGACGTGCTGAAGCTGGGGCTGCAGCGcaggctggagcagctggaggagAGCGTGGCTGTGCTGGAGAGGGAGGATGATGGGGAGCTGTATGGAGCCGTGTCTCTGCGCATTATTGAACTGGAGCTGGCTGAGGTGCTGGAGCTCATGGCCAAACTCAACAGAACCATCAGCTCCCACCGGCAGCTCAGCAACAACACAGCCGCGAAGCTGCacagtctggtggaggagatgcaGGAGCTGGAGGAGTTTGATCACATGCAGGTGGTGAAAAAGCAGCAGGAGAATCAGAGAATGAGGCGAGACCTGGACAACTGCCAGCACCAGCTTCACTCTACTGCTGAGCCTCCAACACCTCCACCAGGAAACTGCCCTCAAGGTCAGCTGGTCAACGTCTCAGGGCCTAGAACATACACCCTCACCCAGTACGGCACCTCCTACTCTTTTGGCGCCTGGGGGAAAGACCCTAATCCTTCTCCGGGGAAGGAACAAGTGTACTGGCTGGTTGCGCTCACCAGCAGCAACATATTTTCTAACTACATCCGTGAATACAACAGCCTGAGCACCATCATAGTTGGTGTGGGGCCCACAGACACAACCATCGCACCGTCTAACCCCACCACCAACACCATCCAGGGCCCCAACGTGGTGATGTACGGAGACGCTGTGTACTACAACTGCTACAACTCACCATCCGTCTGCCGCTTCAACATGACCTCACGCACGGTCACCAATGTGGCCCTGCCCCTCAACTCAGGGTACGGCAACAAATTCCCATTCGGCCACATGGATGGCACCTACACCCACACGGACATGGACTTTGCCACAGACGAGTCTGGTGTCTGGGTCATCTACTCTTCACCTGAAAACTTCGGTAACATCATTATTAGCGAGGTGCTAGCTGGTTCTCCTCCAGTTCTGGGTAGAAGTTGGAGGACGTCTCTCCACAAGCGCACGGTCACCAACACCTTCATGGTCTGCGGCGTGCTCTACGCCACCCGATTCCTCAACAAAGAGACGGAGGAGATCTTCTACTCATTCGACACGGAGACGAGCACAGAAAGCTACAGGCTGAGGATCCACATTAAGAAGATGCAGCCCAACATCCAGTCGCTGAACTACAACCCAGGGGACCGGATGCTCTACATGTACAGCGACGCCCACATCCTGTCATATGAAGCCGTTTTTCAGTGACCTGTTATTTTTACTTATATGCGccaatatgtttaaaacagtttccTTCAATGAGCTCATTGTTTTTTATACCTGTTAGATGCTGAATAAAAGTCTATACAGCACTGTATCTCTGAAATaaaacatgctaatgctaaatatggaatttttgtatattttaagtagtgatttcatgtgtgtgtatgagttcATTGATTTTACTTCTGGGACACAGCATCAGTGTATGAAACACTGTACTGCTATATCGctgaatgctaatgctaataaacattttacatggGCTTTGCTTAAGTCGTAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282233 lncRNA downstream 1355 25626914 ~ 25679875 (-) False G207940
TU282229 lncRNA downstream 1355 25667801 ~ 25679875 (-) True G207940
TU282201 lncRNA downstream 98918 25576068 ~ 25582312 (-) True G207924
TU282218 lncRNA downstream 123863 25554247 ~ 25557367 (-) True G207938
TU282214 lncRNA downstream 214135 25464541 ~ 25467095 (-) True G207934
XR_002651788.1 lncRNA upstream 167294 25852905 ~ 25855561 (-) True LOC111195755
TU282268 lncRNA upstream 207529 25893140 ~ 25894477 (-) True G207964
TU282270 lncRNA upstream 218296 25903907 ~ 25917560 (-) True G207965
TU282327 lncRNA upstream 321609 26007220 ~ 26013616 (-) True G208008
TU282331 lncRNA upstream 329136 26014747 ~ 26015003 (-) True G208011
XM_022683882.1 mRNA downstream 108959 25496301 ~ 25572271 (-) True znrf1
XM_022683879.1 mRNA downstream 229139 25412186 ~ 25452091 (-) True LOC103040081
XM_015602397.2 mRNA downstream 403470 25270141 ~ 25277760 (-) True ccdc113
XM_022683873.1 mRNA downstream 421063 25251235 ~ 25260167 (-) True usb1
XM_022683893.1 mRNA upstream 236970 25922581 ~ 25933202 (-) False LOC111195756
XM_022684337.1 mRNA upstream 303953 25989564 ~ 25992281 (-) False LOC111195825
XM_022683900.1 mRNA upstream 397553 26083164 ~ 26085641 (-) False LOC111195762
XM_022683899.1 mRNA upstream 401040 26086651 ~ 26088415 (-) True LOC111195761
XM_022684393.1 mRNA upstream 406559 26092170 ~ 26095191 (-) True LOC111195867
TU282177 other downstream 359605 25317002 ~ 25321625 (-) True G207903
TU281979 other downstream 732379 24948131 ~ 24948851 (-) True G207772
TU281888 other downstream 1152163 24524734 ~ 24529067 (-) True G207707
XR_452613.3 other downstream 1660916 23983349 ~ 24020314 (-) False dnajc24
TU282220 other upstream 17855 25703466 ~ 25708310 (-) False G207940
TU282294 other upstream 233609 25919220 ~ 25938032 (-) True LOC111195756
TU282304 other upstream 303827 25989438 ~ 25992494 (-) True LOC111195825
TU282385 other upstream 526447 26212058 ~ 26212841 (-) False G208046
TU282386 other upstream 526447 26212058 ~ 26212769 (-) True G208046

Expression Profile