RNA id: XM_022683917.1


Basic Information

Item Value
RNA id XM_022683917.1
length 1716
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC111195765
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 27108299 ~ 27111038 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTGTCCCAAAACCTAGGGAGCTCTCTATGTAGGCACTGACTACGTAGACAGCTGTTTAACTAGACAGCGTTCTAACCGCCATCCAGCCTTATAAGACACATTATTGGGACTCTCTAGTTAGGCAGCGACTGCGTCACGacttggccccgcccacagCACGCGCCCACTGTTTACTTACCTCAGCCGCGGGAACCACCTCATCACCCTACCGGCATTATGGACGAACCTCTTGccgtttttattgcatttttaatagtttttgcgCTGGAGGAAGAGCGACAGAGACGTGAGAGCCGACGTGCTGCAGCCAGACACCGACATTTAAGAAGAAGAGCGCTGATTTCTGCACTTGAACAGGGAGAAAGACCTTCAAGATACTGTTCTCTGAATACAAGTGTACCACTTTTGAGAATATTTCTGGACGACACCCAAGACACCAAGCCTGACTTTCGCCTGAGCCGTGAATCCCTGAAAGTGCTTTTTCAACTTATCAAGCACGAAGGCACCCATGGTTGGGGGGGGACCATTGAGgtgttagtttttcttttttggttggCCTGTGGCACATCATACCGCGTTGTTTCCCGTGCTTTTGCTATGCCCCGTTCTACAGTGCACCGTGTAATTCACAGAATGGCCAGTGAAATGCGGCAAATCCTACCCAAAGTTATCCGGCACCCAAAACCCGAAGAACTGCAGAGCATCTCTGATGGCTTCGTGAGGCTGGGAAACCATACAGCTTTTCACTCTGTAGTGGGTGCCATAGATGGGTGCCATGTGCGTATCAAAGCCCCTGGAGAACCTGATGCACAGTGCTACAGAAACCGGAAGCTCTACCCCTCTGTGCAATTTCAGGCTGTCTGTGACCACCAGGCAAAGTTTCTGGATGTTTTTATTGGCTTTCCTGGCTCAGTACATGATGCACGGGTGCTCCGTCACAGCACTCTGTATCGGCAGGCCACTTTCCCACCCAGGGGCTACATGATACTTGGTGATGGTGGGTACCCATGCATCTCTCAGCCCATAGCCCTCATCACTCCATTCAAGAAGCCTGTCAGAGGAGAAGAGAGGGTGGCCTTCAATAGGCATCATGCAAGGGCACGTTCTATAATTGAACGTGCTTTTGGGATGCTGAAGACCAGATGGAGGTCAATTTTCCTGCATGCCCAAGAGGTAAATCCAAGGTTTGTGCCAGAGGTGATTGCTGCCTGTGTCACTCTGCACAACATCTGCATGGGAGCGGGAGATGTTGTTCAGCCTGAGGAGGAAGcagatgaagatgaggaagcTGATGTGCAGGAAGAAGACATCACAGCTGTCAGTGGCCACCAATTACGAGAGCAACTTTGTGCCAACATTGCTGGTGTCCAGTAATTTTATCAAACTGGAAACAAATAGATCAGTTCGGTTTTCATTAACTGTTACATTtgcactgtaaatattttttatgtaaatattgtataagcctcaatcatttttgtttaatgttctaGTTTAAAATGTCTTATTCCATTGTCTTATTTGTGCTACTTTAAACCAGTTCACTTGTTCTACTCACTGTTAATATTAGTCTTGTTCTGTTAGTgtgtttagaataaaaaatgcacTTCAAGAGTATGAATTTCAGCAAGTGTTAATCTACAACGAACAACCCATTAAGTAAATTTCAGTATAGAATACCTGCAAGGCATGCATTAGTTTACCatgactgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282924 lncRNA downstream 97187 27008167 ~ 27011112 (-) True G208487
TU282918 lncRNA downstream 116371 26991493 ~ 26991928 (-) True G208481
XR_002651794.1 lncRNA downstream 151849 26954767 ~ 26956450 (-) True LOC111195768
XR_002651795.1 lncRNA downstream 156975 26950914 ~ 26951324 (-) True LOC111195769
TU282886 lncRNA downstream 214249 26885476 ~ 26894050 (-) True G208455
TU282971 lncRNA upstream 54138 27165176 ~ 27177419 (-) False G208518
TU282977 lncRNA upstream 54138 27165176 ~ 27167636 (-) False G208518
TU282978 lncRNA upstream 54138 27165176 ~ 27181579 (-) True G208518
TU282982 lncRNA upstream 54138 27165176 ~ 27181579 (-) False G208518
TU282983 lncRNA upstream 54138 27165176 ~ 27180800 (-) False G208518
XM_022684353.1 mRNA downstream 154826 26951689 ~ 26953473 (-) True LOC111195857
XM_022684352.1 mRNA downstream 158929 26946294 ~ 26949370 (-) True LOC111195856
XM_022683919.1 mRNA downstream 292840 26792762 ~ 26815459 (-) True kitlg
XM_022684351.1 mRNA downstream 393046 26673606 ~ 26715253 (-) True cep290
XM_022683916.1 mRNA downstream 468076 26613862 ~ 26640223 (-) True LOC103031232
XM_022683924.1 mRNA upstream 1045729 28156767 ~ 28163353 (-) True tmem231
XM_022683925.1 mRNA upstream 1066102 28177140 ~ 28193065 (-) True adat1
XM_022684355.1 mRNA upstream 1105357 28216395 ~ 28268369 (-) True wwp2
XM_022684356.1 mRNA upstream 1199828 28310866 ~ 28367957 (-) True nup160
XM_007241086.2 mRNA upstream 1361483 28472521 ~ 28476854 (-) True rpl27a
TU282801 other downstream 452115 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 895458 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 895530 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 1115805 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 1170267 25919220 ~ 25938032 (-) True LOC111195756
XR_002651797.1 other upstream 34998 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 1148266 28259304 ~ 28268342 (-) False wwp2
TU283796 other upstream 2912923 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 3051419 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 3051419 30162457 ~ 30162973 (-) True G209127

Expression Profile