RNA id: XM_022683945.1


Basic Information

Item Value
RNA id XM_022683945.1
length 1559
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC103041235
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28668730 ~ 28683502 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCATCTGCTGTCCAGTTTAATTTAGTTCTATCAACTTCTGTCTGATGGCTTGACGAGTTTCTACCATCTCTTGGGCAAAGatttgcAGATGAATAACTTTGGAGGTCCAGAGTGCAGTTTTCAAGGAGACTTAAACAGAGGGTCTTTTGTTCCTGCGTCTTTATTCCATGTTGAAATCCCAAACGAAGTCTTTTATTCAGGCTCAGTTCACCACTACAGTGAAGGACCCCCACATACCACAAATCCAGACGAGCTCGGTTATCCCAGACTGGATAATGATTTGGGCAAGTCCAGAATGTACTGTGACCCATTGTCCCAGTGCCCCCTTGTTCCGTATCCTGATTACCTGCTATGTCAAGCCGCACCATATCACTTTATGAATCCACCGGTGGGCCTCTGTAAAAACACGCTGTCCACTTGGACACCTGAAGAAGCTTTTCCTTATTGGATGACTTCGGCAGAGATGCACGAAGGTGTTGCCAGCATTACCTCAGAGGGAGCAGACGAGCACTGTAAACAGACCTGTTCCAGACATGAGTCTGTCActgagcttctggacatgggcCACAATgtTGTGTGTAACGTAAATGATGGTGGACAGATGATGGTACTGAATCACTGCAGCCCAAACCAGATCATCCAACCCATGGTCCAGGACCAAAGTACACCAAATCCTGACCCCCTTCTGTACGCTGcagatcacacacactcccctgAGCGCTGTCTCACACAGGaaacagCTGATAGTCCACTACCGAAACAGGTGCAGAGGGGATTCTCCTCTCCGATGTATTTGTCCTCCCTCACCAGCTCTAATGTCCACCCATCCTCCAATTCGAATTCTTCTACTCCCAGCTACAATTTCACATTAGGGACATACATCTCTCCGAGCTCCTGCACTGAACTTCCTAAACCAGGAGGGGTGGAGTCCAGTGAGACCCAAAGTGTGCGAGAAAGACTGAAGAAGCCTTGCAACTGCACTAGGTCACAGTGTTTGAAACTATACTGTGACTGCTTTGCAAGTGGAGAAGTTTGCAGCAACTGTAACTGTACCAACTGCTGTAACAACATGGAGCACAAgtcagagagatacagagcaaTGAAGatttgCTTAAAGAGGAACCCAAAGGCCTTTCATCCAAAAACCGGAATCAGAAAGGTTGGGGATGTGAAAAGTCGTCACACAAAGGGGTGCAACTGCAAACGTTCGGGCTGCCTGAAGAACTACTGCGAGTGTTAcgagGCCAAGATCATGTGCTCCTCCACCTGTAAGTGCATTGGCTGTCGCAATTATGATGGAAGTCCGGTGAGAGAGCTCACTGGAAGGGAAACCCCCAACACCCCTGAGAACAGCTCCGGTCTGCACAAGTGTCCTCTCTCCTGCATCACGCCTGATGTTGTGGAAGCCACATGCGGCTGCCTGCTGGCCCAGGCCGAGGAGGCCGAGCGGGAAAGGCACACGCAGCCTCACGCTGAGCGAATGATTTTAGAGGAGTTTGGCCAGTGCCTGACACAAATTGTGCGTTCGATGTTTAAATCCACAGGAGTGCAGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283365 lncRNA downstream 1526 28662211 ~ 28667204 (-) False LOC107197304
TU283366 lncRNA downstream 4682 28662211 ~ 28664048 (-) False LOC107197304
TU283363 lncRNA downstream 4830 28662211 ~ 28663900 (-) False LOC107197304
TU283373 lncRNA downstream 22107 28644660 ~ 28646623 (-) True G208778
TU283290 lncRNA downstream 170047 28498430 ~ 28498683 (-) True G208716
TU283390 lncRNA upstream 1082 28684584 ~ 28693510 (-) True G208787
TU283440 lncRNA upstream 31808 28715310 ~ 28715632 (-) True G208827
TU283458 lncRNA upstream 82181 28765683 ~ 28766695 (-) False G208843
TU283459 lncRNA upstream 83263 28766765 ~ 28769030 (-) True G208843
TU283464 lncRNA upstream 99606 28783108 ~ 28791943 (-) False lrp5
XM_015603785.2 mRNA downstream 4806 28662183 ~ 28663924 (-) True LOC107197304
XM_022683940.1 mRNA downstream 46632 28602890 ~ 28622098 (-) True LOC103040620
XM_007241085.3 mRNA downstream 179296 28483491 ~ 28489434 (-) True psma1
XM_007241086.2 mRNA downstream 191876 28472521 ~ 28476854 (-) True rpl27a
XM_022684356.1 mRNA downstream 300773 28310866 ~ 28367957 (-) True nup160
XM_022683948.1 mRNA upstream 10664 28694166 ~ 28701575 (-) True gal
XM_022683947.1 mRNA upstream 10664 28694166 ~ 28701159 (-) False gal
XM_022683949.1 mRNA upstream 10664 28694166 ~ 28701148 (-) False gal
XM_022683950.1 mRNA upstream 51684 28735186 ~ 28742593 (-) True LOC111195773
XM_022684357.1 mRNA upstream 99581 28783083 ~ 28860774 (-) True lrp5
TU283202 other downstream 400388 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 1516430 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 2012546 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 2455889 26212058 ~ 26212841 (-) False G208046
TU283796 other upstream 1340459 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 1478955 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 1478955 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 1518103 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 2415342 31098844 ~ 31099861 (-) True G209224

Expression Profile