RNA id: XM_022683966.1


Basic Information

Item Value
RNA id XM_022683966.1
length 2487
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC103034116
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28871840 ~ 28888885 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAAAAGCAgtagtgtgagggtgtgtgctGTAGGGGGCAGCAGTGGGTTCGGTAGGTCAGTGTGCGACGAGGCAGTAAAGGACCGAAGGAAGAGACTTGAGTCGTGTCTGTTTTGGGGCGAACAGATTTCAGCTTCAGCATGAAGAGAACACCACAGCGCCCCAACCCCTAAATCATCATAACACCTTCACACAAACATCTAAACACACATTTACCTTCTTCCCGTGTTTAACCCCTGTACGGGAGCTGTGCTGCAGAGCTGTGTTGAGCTCCAGCTGAGATCCATGAAGCTACCAGGCTAACTGTGTTTCCCTCTGcaGGTGTTGTGATGCGATGGTGTTTCTGGGTGTGTGAGCTTCTACTTTCATCATGAACGTTCACCACCTCCCCCTGCTGCTCCTCCTGCTGCCATGTGTCTGCTCAGCAGCAGCCAACGGCTCGGCCTCCATTGTTGGCCACCTGGTGACGTCAAATATGGACAACTGCGTCCTTTCAAACTGTGAAAAGAATTTCAATTTGTCCTGTAACAAACTCGTCTTCTGGGACAAGAAATCCATATGTATTTTCCTAAACTGCCCCAGTGAAAAATCGTGTGAGCAGTTACTGGAGGAACTGGCAACGAAAAGCCAGGATGTTGTCAAACTTTTGCATGAACCAAGATCTCTTCCTACTTCATTTTCTCAATCTGATCCTGATGTTCCCCAACCTGGTATTGATGCCCAAACTACTGCACCCAATTTTCATCCAAAAGCTGTCGTTGGCCCTTCATCTGCTCCTAGTACCTCTCTACCTGTAGTGCACCCTGTGGACTCCAGCAATACCAACAGCTCGTCAAAAAATGAACCTGGAGGGCCAGGTAACCCTCCACAAGTCAACACTGTTGTACCTTCAATAAAGAACATTACTGCTCCTGCAGCAACTCTCAGGCCAGAGACCACACCATCGGCTCCACCAAAAGCTGTAGGTTCAGAGAACTTCCCAACTGCAGGGGCTAAGACCTCCCCCGAGATCAAGACCTCCCCCGAGATCAAGACCTCCCCCGAGATCAAGACTTCCCCCGAGATCAAGACTTCCCCCGAGATCGAGACTTCCCCCGAGATCGAGACGACCCCCGAGATCGAGACGACCCCCGAGATCGAGACGACCCCCGAGATCGAGACGACCCCCGAGATCGAGACGACCCCCGAGATCGAGACTACCCCCGAGATCAAGACAACCTCAGGGTCCTCCCCTAAAGTGCCATCCACAGCTCCCACTGCAACAAACGCCACAGTGATAACCACAACCACAGTATCGACCTCTACCACAGTAACCAACGCCACGACCTTCACCGTTGCTGCAATAACgaataccacagtaaccacctcAACACCATCAACGATACCAGTGACCACAACAGTTTCTACACCTACAAACACCACAACAGTCCCACTTACTGTTCCTGTGCAGCCACCAACCACTGCAGAATCTACCACCATGATAAAAATAACAACTTCTTCACCTTCTTCTGCAACCACCACCACTCCACCACCCCACTTACCCAGTACCCATTCTGTTACCCCAACAGAGGACCAAAAGCCTTCAGAGACAACACGGAATCCCCCAGAGAAACCTCCAACAGGGCAGTTACCCAACACTGACAGCAAGGCAAGAGACCAGGCTGGCCAGGGGGTACTAGAAGCTGCAGGAGAACCGCTGACATTTCACGTGGTCAACACCAGCTCTCTTCTGGCCGTGCTAATGTTTGGTCTGTTGTTCTTTGTTGTCACAGTCGTCCTCTTCCTCAGGCACGCTTATGAAAGCTACAAGAGAAAAGACTACACACAGGTGGATTATCTGATCAATGGCATGTACTCTGATTCAGGGGTATgagtttacatttttgaaaaatagaaaaatgtggggtttttttcctcttgattccagtgttgattttttttttgttgatgggGGTATTACTACTTGGTATTTGCTAGACTCAGAATGTGAATGTTTGTTAAGGATTTCACACTGTTCTGCAAAAACTGAGAAGATTATGGGACACGACAGTCTTCAGTATGACTTCATTCAATAATGTACAGATTTTGTGTTTGATTTTCTATGCAGAAGACGCTTCCATTTAATTCACACTATACAGAATTTAAGCCTTAGTCTTAACCCTTAAACCCTTAACCTTTTCTCAGTGAATGTTATTCTAAGAGATTGATGGTGCAATATTTTCCTTTTGTCTTTAATTTTCCATTAATGTCCACTTTTTTAAGAAGGACTAACGCGGTCAGGTTGCACTAGTTGCCTTTTTCGCTGTCTGTATTAGAATGTGTTAACAGTTAATGCCTTTTCACTTTATttgcctttctttttttcttaaatacttTGActttacttttgtatttttctgttttcaaaCCATTCCACTTTTCGGGTTAAGAATGGATGCCAAAAATGGTCACTGTGGTACAGAAGCACATTAAAGAAAAGCCAATGGAA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283466 lncRNA downstream 77406 28792124 ~ 28794434 (-) True G208849
TU283464 lncRNA downstream 79897 28783108 ~ 28791943 (-) False lrp5
TU283459 lncRNA downstream 102810 28766765 ~ 28769030 (-) True G208843
TU283458 lncRNA downstream 105145 28765683 ~ 28766695 (-) False G208843
TU283440 lncRNA downstream 156208 28715310 ~ 28715632 (-) True G208827
TU283499 lncRNA upstream 25275 28914160 ~ 28923330 (-) True G208865
TU283540 lncRNA upstream 45949 28934834 ~ 28937449 (-) True G208899
TU283569 lncRNA upstream 174614 29063499 ~ 29068424 (-) True G208921
TU283588 lncRNA upstream 281794 29170679 ~ 29170900 (-) True G208939
TU283660 lncRNA upstream 459925 29348810 ~ 29353755 (-) True G208976
XM_022684357.1 mRNA downstream 11066 28783083 ~ 28860774 (-) True lrp5
XM_022683950.1 mRNA downstream 129247 28735186 ~ 28742593 (-) True LOC111195773
XM_022683948.1 mRNA downstream 170265 28694166 ~ 28701575 (-) True gal
XM_015603523.2 mRNA upstream 130335 29019220 ~ 29020927 (-) True LOC107197240
XM_022683975.1 mRNA upstream 155090 29043975 ~ 29157568 (-) False LOC103039163
XM_022683974.1 mRNA upstream 155090 29043975 ~ 29130273 (-) False LOC103039163
XM_022683973.1 mRNA upstream 155090 29043975 ~ 29130273 (-) True LOC103039163
XM_022683978.1 mRNA upstream 545594 29434479 ~ 29471880 (-) False LOC103042757
TU283202 other downstream 603498 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 1719540 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 2215656 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 2658999 26212058 ~ 26212841 (-) False G208046
TU283796 other upstream 1135076 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 1273572 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 1273572 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 1312720 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 2209959 31098844 ~ 31099861 (-) True G209224

Expression Profile