RNA id: XM_022683974.1


Basic Information

Item Value
RNA id XM_022683974.1
length 6424
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC103039163
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 29043975 ~ 29157568 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taccaTTGTAAgcaatagagggagagagagagaggttgagtTCTAATCTCTCAGTTCTCTGTTTGTGagtgtttgatctgtgtgtgtgtgtctgagagagtgagtgtgtgtgcatgtgtgtgttggtggagagACTCAGGATTCTACTCTTATTCTTGGATTTAAAATCTTCAGAATATACTAAAGCAGAACATCAGATCCATCTACGATCCAGAATGTGGTGCTGGGAGGATCTGAGTAGTTTGACGTAATGTTTAGTCACCATACGCCAACAAACACACCAGCCAGACAATTACAGCAGGCTCAGATTATCTCTCCATCCCTGTAAACATCTGGAGTCTGAAGATTTTAATACCTGTAGGATCTGGATCTGAGGATTATGCTGATTTAGTTCTTCGCTTTGCTGAATCTTAAATATCAGATCACACAATGGCTGACCCCTACCAGAACAGCTATCACCACGGTGACGCAGATGGATACAGAACGTACGGCGATGGTGGTCAAGATGGTTACGGCTACCAGACTGACTACCCGCCCCAGGAGGAGGACGCTGCCAGCGATGCCACAGAAGGTCACGATGAGGAAGATCAGATGTACGAGGGCGAGTACCAGGGCATCCCCCACCCTGATGAGATCAAAGCAGCCCGCCGGGCGGCCAGGGCCAAGGCTCGTGCGGCGGCAGACGCCGTGTCGGAGCAGGAGGAGCTGGCAGAGCAGTATGAAGATATTATGGAGGACTGCGGGCACGGGCGCTTCCAGTGGAGTCTGTTTGTGGTGCTGGGGTTGGCCCTGATGGCGGACAGTGTGGAGTGCTTCGTGGTAGCCTTTGCACTGCCCAGCGCAGAGAAGGACATGTGCCTGTCCAATGCAGAAAAAGGCATGCTGGGTTTGATAGTGTTCCTGGGAATGATGTTCGGAGCGTTTATTTGGGGTGGAATGTCTGATAAAGTTGGCCGGCGGAAGTGTCTGATCATCGCTTTGGCCATCAACTGCGTCTCCgccttcctctcctccttcgCCCAGGGATACggcttcttcatcttcttcaggCTGTTCTCTGGCATTGGGATTGGTGGCTCCGTGCCAATTGTATATTCGTACTTCTCGGAGTTTCTGCAGATGGATAAGAGAGGAGAGCACCTCAGCTGGCTCTGCATGTTCTGGATGATGGGCGGCATCTATGCCTCTTTCACCGCCTGGGGCATCGTCCCACGATACGGGTGGGGGTTCAGTATGGGTTCTGAGTTTCAGTTCCACAGCTGGAGGGTTTTCGTGCTGGTCTGTGCCCTGCCGGCTATCGCTGCCCTCATCGGCCTCATGTTCATGCCTGAGAGCCCTCGCTTCCTGCTGGAGCATGCTAAACATGACGAGGCCTGGATGATCTTGAAGCAGGTCCATGACACCAACTGGAGAGCAAAAGGAGAACCTGAGAGAGTCTTTACTGTTTCTCAAATCAAGACTCCAAAGACCCAGGAGGACGAGTTCTTTGAGATTCAGAGCTCCACCGGTACAGCTTTCCAGAGATGGGTGGTCCGCACTGTGACCCTAATCAAGCTGGTGTTGAAGAATGTCCTATCCCTCTTGACTCGTGAGTTGAGACTTTCGACTCTTCTCATGGCTATTATTTGGTTCACAATGGCTTTCAGTTATTACGGTTTGGCCGTGTGGTTTCCGGACATGATCAAGCACCTGCAGTATGAGGAGTATGAGTCCAAAGTGAAGGTGTTTCACAGGGAGAAGGTTGAGCGCTTCCATTTCAACTTCTCTTTGGAGAACCAGGTGCACAAAGAAGGAGAATACATCAACGACAAGTTCGTGAACATTGAGATGAAGTCGGTAAGGTTTGAGAATTCGCTCTTTGAGGACTGTTATTTCGAGGACATTAAATCCACAGAGACCTTCTTTGAAAACTGCACCATAAAGTCCACTGTCTTCTACAACACTGATTTGTATGAGGAGAAGTTTATTGACTGCAGAATGGAGAACACCAGCTTCTTCCACACTAAAAAAGGCTGTCATCTGAACTATGAGGAGGAGAACGATGTTCTTATCTACTTGGTCAGCTTCTTGGGAAGTCTGGCCGTGCTGCCTGGAAATATCATATCAGCACTCTTCATGGATAAAATCGGCAGGATCAAAATGATAGGGGGCTCCATGCTGATCTCAGCTGGCTGCACCTTCTTCCTGTTTCTGAGCTTCAGTCAGGCGGCCATCATTGCCTGGCAGTGTCTGTTCTGTGGAGTCAGCGTAGCGGCCTGGAACGGCATCCAGGTCATCACTGTGGAGCTTTACCCCGCCTCTAAAAGAGCCACGGCGTTCGGTGTGCTCAACGCCATCTGTAAGCTGGCTGCCATCCTGGGGAGCTCCATCTTCGCCTCATTCGTGGGAATCACCAAAGTGGTCCCTATCCTGCTGTCCTGTGCAGCGCTGGTGTGCGGGGGGCTGTTGGCGCTGAAGCTGCCCGAGACCAGAGAGAAGATTCTGCTGTGaaatcaaaccatcaaacccacacacacacacacacacacacaccacacacaacacacagatgGAGTCTGGGATCACGCTGCACCCAGACGAGGCTAATATCACTCCACTGATTTTCTTAGAAATCTCCCATCTGACCCTGACTCATCCACTCGCTGTAGCGACAAAAATAAGGACATCTAATGATCATGTGCACTTTTTTAGCCCAAACCCATCAGGAATATACTCACCCTGGAGTAAACTGCGCTGCACCAAATCTACTTAACCAGCATGAGTTCGGCACACGCTGTGAATGAACATGCTGTTaatcagtgttctttaagtgcTGACCATATCCGCAACATACTGAGAACAGCGATAATGATAAATATCACCTCTAACTTGCAGATCTGATTGAATTTCCATAAAAATGACCAAACCAAATGAGAGAAACtgtgaaataacaataaaacatatataaatatatacactccTCTCCAAAAGTGTTGGAACAGTAAGGAAACCCCTTATccctgctgtagactgaaaacatttgggtctaacattaaatatatatattaaaaaaagatcaacattttatTTCCAGGCACTTACACacatctgatacacagttcagaagatagaaCCTTCTATCTGAACCCACCCTTTTTTATTGTGAAGAAACAAAAGTGTTGGAACATGTGTCAGTCTACGTTtggtttcagatttgggttttttctgtgcagactgtgcatttatagttagaagagtaaactaaatataaatcagaaagctgtgtgtggatgataAACAAGCgactgtgaagctgagagattatgtaaaatcaatcagagccattGCATTAATATTAGCCATGGATAGCACAAtagtttggaatgtcctgaagaagaaagtcatcactggtgtactaagtaacagatgtggAACAGGTAGAACAAGGGAAAGCACTGCAGTTAATGACAGACACATTGCGAGTGCTGGAAAGGAAGACGCCAAAAAAACAACTGACAGGATTTAAGGTATCATACTCTACTGTTCACAAAAGACGTTCACCAGACAATGCAACTTAACTAAGACTAATTAACAAGAAATTAAAAAGGCTTAAAGGATAGGCTCATTGatcttcttttattttcagtttatatgtttcaatatttttgttcaccaaaatatttgtgtgttcagaaaatctatttaatggatttaaaagttcaaatgttgatcttttgtctcatattcataCTTTAATGTCTAAGCCAAATGTTTTCGGTCTACAGCAGAATTAAAGGGGTTGACCTCACTGTTCCTATACTTTTGGAGAAGAGTATATAGATATAGCCATAAGAATAAGCATATGATTGTAGAGGACCATCCTCCACATTTTTATTCTCCAGGCTCTGAAAGTCAGGTTCACTGTTCTAATTTGATGTGAACAGAAGCCTCTTAAATCACTACATTATTGCTAATAAACAAAAATTCAGGTaccttaaacaaacaaatatttattttttccttgctttttgtttcgtCTCGCTTGTATCCTGCCACAGTGTGAACTAGCCTGTAAGTAGCGCCCTCTGCCTTTGGCCTCCTGCGCTGACTCAGCTGAAGGAACTCGTGTTTCTGTCCCGGTGTTTGCTAATATTCTTTGTCCTTTTGATTTTGCAGTGAAGGCTGAGTTCACCATGTTGTTTTCTAGATGtgatgaggagtgtgtgtgtgtgtgagctgagcTATGTGTGTTACACCACtgaaatcactcagttacagaaCACCCTGATCCTTTTCTGTAAATCACAGTTGCACCATTCCTGAGAAGCTCCTGTCTGTAGTTCTGGctgctgtgtgtttatagtCTCACACTTCTGTACATTACTAAACATCAGGCCAGTGAAAGCttcataaatattataatatagctAATTTCTGATTATATCCAACAATCTGTGAAATATCGTCTGAGATtgtattttttccctttatgtCATTCACTTTATCTGGCAAATAGTGAACTGttttagattgttgttttaatgcCTGTGCAAATAATGTTTATGTGCTACAAGTCCTTCCACACAATAGATTTCATTACAATGttaagtttgtttatttttattttatttctttaatgtaTTTCATGTAATTCCTCTTCTGGGAGCAAAACTAATGTATACTCGTCTGCCAGTAACACTTAATGAAATTACTAAATACATTTGATAAATAGGTTGAATACTGTTAGTTCTTCTTCCCTCAAAAGTAtgattattgcatttattttttatatttatgatgaTTTCACATATGCAGATATAACTTTTCATCAACTCTTGGCATTTCATTTCCACAGGTAGAGTCAAAccctgaaaaaacacagaaatcacAGGATGAGTGTTTGACTGAATGCTGTTAAAATCACTCACATTCACATAACTGTAACTGTACTAGCTGTTGACTGAGCTGCATGTGTGCTATCTACCAAGTGatgtttgtgtctttttttttctttactgtgtcGTTGACCAAGCCAATGATCTGAGTGatcttaatgtgtgttttatgtaaataaaactgGACGATTGTTAATTATCAGTCTATTAACAGTCTATTCTGGGGGGTTAAATATAGTGGAAAGCTGTGcatacagtactgtactgaCTGAGTTCTCACAGAGCTCTGCATGCATAAATACTCCATTCCACTCAAAATATAGAAATACTCCAGCATTCGTCTTCTGAATCTCTGTCTGCTGTATCTGTAGTGTACAGGCGATTACCACAGACAAAAAATTTAACCCATTATGTGAATCAAATCTTTGTTTTAATGACCAAATGTTTTACAAAGCAACCTTACAGAAAtccaaatagaaaaagaaaaacagagacaaaataTTTAGAACATATGACTCCAAGTGAGCACACCAAAAGACCACAGTGCAGCAAATACATGTATCTTCCATCAGTGCAGGTCGGGCAGTTACTAACCCTTTAAGGTTATTAGATAGAATTAGATGCGTTTCTGTTTTATGGAGTACAGACAGAAAATATGAACATGTTCTTCCATGTTTCTCTGGacttgaaaaagaaaagaagtaaaGGGCAGTCACTGAATTCTGTCTATAAATATCTACAGCTGACAGGCTGTTTGTAGAATTTGCTCttcatgtgtttctttattataTAACTTATTATTAACAGTGGACGTGCAGCATGTCCTGCTGATATTTGTAGTTCACTTTGTCTTGCAGAATGGGCGTGGCTTGGACTGAACCAGAAGTCAGGAACTCATCGATTTTGGTGCACTTAAATTAATAATAGCTgattaaacagtaaacagtgtgTTAGTGAATGATACAGAAGAAGCAGACAGAACTCAGTCTGATAAATGCTGGAGTGTTCATTTAATGGAGTCTAATTCACGCTGAGTGATCTAAGAAATACTTAGATCTCATTTAAGGAAAAGCTTTAATGTCGTATCCCttatacagcagtttataaACTCCTGGTTAAATAATATGtgttaaaaaacataaagacaaatctctgcacatttaaaattgtaaaatgtgcaaaaaatatatatataattaatttcctGGAGGTGCAAAAATGGTTGCATTAAACTGTAAATGTCTACACAGCAGGGTGAAACCCGCCGCTGCAGGTTTGCATATTAAATGATGATAATTAATGAGGTGAAGAGTCTGAGGAGAAGAGCGCTGGACAGCTGAGAGTCCGATCTGTGTTTATGTTGTCTGTGTCGCTGTTCGGGGAATGCCACATCACTCCGtctgtctttatttttattatgttggTTCCACCTTGTTCTCACAGGAATGGAGATTTGAATATGGTTCTGTTTGaatgtgtttctttctctctttgttttgtttgtgacTGTAAatttctgaaatatttaaataaatctattcATGTGCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283540 lncRNA downstream 106526 28934834 ~ 28937449 (-) True G208899
TU283499 lncRNA downstream 120645 28914160 ~ 28923330 (-) True G208865
TU283490 lncRNA downstream 158433 28879984 ~ 28885542 (-) True G208861
TU283466 lncRNA downstream 249541 28792124 ~ 28794434 (-) True G208849
TU283464 lncRNA downstream 252032 28783108 ~ 28791943 (-) False lrp5
TU283588 lncRNA upstream 40406 29170679 ~ 29170900 (-) True G208939
TU283660 lncRNA upstream 218537 29348810 ~ 29353755 (-) True G208976
TU283662 lncRNA upstream 225858 29356131 ~ 29359313 (-) True G208977
TU283760 lncRNA upstream 391812 29522085 ~ 29984304 (-) True G209058
XR_002651801.1 lncRNA upstream 516593 29646866 ~ 29647575 (-) True LOC111195775
XM_015603523.2 mRNA downstream 23048 29019220 ~ 29020927 (-) True LOC107197240
XM_022683968.1 mRNA downstream 155090 28871840 ~ 28888885 (-) False LOC103034116
XM_022683966.1 mRNA downstream 155090 28871840 ~ 28888885 (-) True LOC103034116
XM_022683967.1 mRNA downstream 155149 28871840 ~ 28888826 (-) False LOC103034116
XM_022684357.1 mRNA downstream 183201 28783083 ~ 28860774 (-) True lrp5
XM_022683978.1 mRNA upstream 304206 29434479 ~ 29471880 (-) False LOC103042757
XM_022683977.1 mRNA upstream 304206 29434479 ~ 29471880 (-) True LOC103042757
XM_022684361.1 mRNA upstream 930875 30061148 ~ 30110040 (-) True LOC103023888
XM_022683985.1 mRNA upstream 1037828 30168101 ~ 30195378 (-) False LOC103038627
XM_022683981.1 mRNA upstream 1037828 30168101 ~ 30195378 (-) True LOC103038627
TU283202 other downstream 775633 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 1891675 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 2387791 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 2831134 26212058 ~ 26212841 (-) False G208046
TU283796 other upstream 893688 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 1032184 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 1032184 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 1071332 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 1968571 31098844 ~ 31099861 (-) True G209224

Expression Profile