RNA id: XM_022683978.1


Basic Information

Item Value
RNA id XM_022683978.1
length 3128
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC103042757
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 29434479 ~ 29471880 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTCTATATTCCCTCAGTTTCTTGAGACAGAAGCTGCCGGAGAGGCTGAAGACCAGCTATTTAACCGCGGGATTAACGCTATGAACCTTTCTTAGCGGTTACTCGGAGTTTGTCCGTAATTCTttcaaGATATTGGCACAGCTGATTCCTTGGAGGTGGCAGAAAAAATGTCAGTCAGCGTCCATGAGAACCGCAAGTCAAGGACAAGCACAGGCTCCATGAACATCTCCCTCTTCCACAAGCCCTCACATCCGGACAGCGTCCTGACGCACCTCAACACTCTCCGCAAACAGTGCATGTTCACTGACGTGACGTTATGGGCCGGGGACCGTTCCTTCCCTTGCCACAGGGCGGTACTGGCGGCGTGCAGCCGCTACTTCGAGGCGATGTTCAGTGGAGGCCTCCGTGAAAGTCTGGACAGTGATGTTAACTTCCGGGACAGTGTGCACCCAGAGGttctggagctgctgctggacTTTGCTTACTCCTCTCGAGTTATTATCAATGAGGAGAACGCAGAGTCGCTTCTGGAAGCTGGAGATATGCTACAATTCCACGACATCCGTGACGCAGCAGCAGAGTTTCTCGAAAAGAACCTGCATTCGTCCAACTGTCTGGGGATGATGCTGCTTTCTGATGCCCACCAGTGCAAGCGCCTCTATGAACTTTCATGGAGGATGTGCCTGGTTCATTTTGCAGCAGTCCGAGACACAGAGGACTTTTACGGTTTGTCTAAAGACAAGCTCCTGGAACTTATCCTCAGCGATGAGCTGGAGATAGAGGATGAGCAGATAGTATTTAACGCAGTTATGCGATGGGTCAAGTACGATTTAGACAGTCGCAGAGACTACCTTCCTGAGCTGCTCCGGGGTATCCGTCTCGCGCTGTTGCCATCGGAGTGCCTCATCGAGGCCGTGGCTTGTGAAGAACTGGTTATGTCAGACAAGCGAAGCAGGCAGATTGTGGAAGAGGCCATTCAGTGCAAGAAGAAGATTCTGCAGAATGATGGAGTTGTCACCAGTCCCTGTGCCAGGCCACGCAAAGCTGGTCACACGTTGCTCATTCTCGGAGGCCAGACGTTCATGTGTGATAAAATCTACCAAGTAGATCATAAAGCGAAAGAAATTATTCCCAAGTCAGACTTGCCCAGTCCTAGAAAGGAGTTTAGTGCTTGTGCCATTGGCTGCAAGGTTTACGTGACTGGAGGGAGGGGTTCGGAAAATGGAGTCTCAAAAGATGTATGGATATACGATACGGTCCATGAGGAGTGGTCCAAAGGCGCTCCGATGTTAATCGCACGCTTCGGCCATGGTTCAGCAGAGCTGGAAAATTGCCTTTATGTTGTTGGAGGTCACACTGCCATAGCTGGCGTTTTTCCTGCTTCCCCTTCAGTATCTCTGAAACAGGTAGAGCGGTACGACCCGCTGACCAACAAATGGACCATGATGGCACCGCTCAGAGATGGTGTCAGTAACGCAGCTGTAGTCAGTGCCAAGCTAAAGCTCTTTGTATTTGGTGGGACTACCATCCACAGGGACAAGGCTTCCAAAGTGCAGTGTTACGACCCTGTAGAGAACCGCTGGACGATAGCCGCAGAGTGTCCTCAGCCCTGGCGATACACCGCTGCTGCTGTGTTGGGCAGTCAGATCTTTATCATGGGCGGTGATACAGAATTCACCGCTGCTTCTGCTTACCGCTTCGACTGCGAGACCAATCTATGGACACGAGTAGGAGACATGACCTCTAAACGAATGAGCTGCCATGCTGTGGCCTCTGGTAACAAACTCTATGTAGTTGGTGGCTACTTTGGGACTCAGCGCTGCAAAACATTGGACTGCTATGATCCAACATCAGACAGCTGGAACAGTATCACCACAGTGCCTTATTCACTGATTCCCACTGCATTTGTTAGCACCTGGAAACACCTCCCAGCCTAGTAGCACCAGAACCGACAGGATAAACTTGAACTGGGTGTGGATCACGCTCTTCCAGCCATAGCCGATGATGGCAGAAGCAGAGGCGTTTCTGGGCGAGATTCAGCCGTGGTCAGCCTTGTGGTTGGTCAGCCGTGCAGTTGCGACAGAGGGCGCctctcaaaaaacaaacaagcaaatatAACTACCTAGGAGTGAGCGAGCGGAGCGACCAGAAACGTGAGCGACGCCAACGACAGCACAAAGCTATGAAGCTATTTACACGACATGCGTTTCTTCTGTTGCCAAACAAGAggcacactgacacactgaccTCTCGCCTCCATATCTGTGCTGTGTTATTTGgaaatttttaaatatctgaaatattGAACATTTTTGGTGTCAAACACTTGGCCAAGGGCCAAAGGAATTTCAGcagtatgtaaaacagagaCCTCTGAGACTTCTGAGGCAAGCCAAGTAGGATTTTTAGACTTGCTTGACCTCCACCCATTGATACAGTATGTGCCCATGGTGGGCTCTCTTGCTTCCAAAGGCCTTGTGAACACTACAGTGGAAACCATACATTACATCAAGCTGAAGCCtaatgaaatgtacagaaaTGAAATGCAGATGCTGATGTAGGAACACctgtattatgttttatttaacaacGTAAAAGTACCTATGAAGTGAAACTGAACTACTAGAACTAGAACTGTAGGACTCCTCAGCACAAGGACTTCCAGGCATTTACACTCTTATAGAACTGGAATGATGAGAATTTGATAAATGCATTACAGTTAagttatttcagtgtgaaatacaacaaaacaaaaaagtttgcaCATACCGCAATTTTGTTATAGGATGATGAGGGTGTTTGTTACTGAACTATATTACTGAACTGAAGTTTTTAATCTGAATGCTTCTGTGGAACATATTTGAAGAATGACCTTCACCACAGGTCTGAAGAACAGGGCATGTTTTACCACGGTTGGTTTTAATGTCTTACAaactttcttctttttaatgGAAAGTGACTCACTGCTAAAGTTTTCCATTCGGAAGGGCACATTCTCTGGGATTAACGACTCAATCCCGTAGGCCTCCTCATGAACTGAACTCCCGGTGCCTAAAACTGCTAGCCATGTTTGTCGTTAATGCACTCTGTTTGTTGAAGGTTTGAATAAATGACTTTCTGATGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283662 lncRNA downstream 75166 29356131 ~ 29359313 (-) True G208977
TU283660 lncRNA downstream 80724 29348810 ~ 29353755 (-) True G208976
TU283588 lncRNA downstream 263579 29170679 ~ 29170900 (-) True G208939
TU283569 lncRNA downstream 366055 29063499 ~ 29068424 (-) True G208921
TU283540 lncRNA downstream 497030 28934834 ~ 28937449 (-) True G208899
TU283760 lncRNA upstream 50205 29522085 ~ 29984304 (-) True G209058
XR_002651801.1 lncRNA upstream 174986 29646866 ~ 29647575 (-) True LOC111195775
TU283770 lncRNA upstream 237243 29709123 ~ 29713238 (-) True G209067
TU283787 lncRNA upstream 411766 29883646 ~ 29885174 (-) True G209082
TU283795 lncRNA upstream 550219 30022099 ~ 30022721 (-) True G209089
XM_022683975.1 mRNA downstream 276911 29043975 ~ 29157568 (-) False LOC103039163
XM_022683974.1 mRNA downstream 304206 29043975 ~ 29130273 (-) False LOC103039163
XM_022683973.1 mRNA downstream 304206 29043975 ~ 29130273 (-) True LOC103039163
XM_015603523.2 mRNA downstream 413552 29019220 ~ 29020927 (-) True LOC107197240
XM_022683968.1 mRNA downstream 545594 28871840 ~ 28888885 (-) False LOC103034116
XM_022684361.1 mRNA upstream 589268 30061148 ~ 30110040 (-) True LOC103023888
XM_022683985.1 mRNA upstream 696221 30168101 ~ 30195378 (-) False LOC103038627
XM_022683981.1 mRNA upstream 696221 30168101 ~ 30195378 (-) True LOC103038627
XM_022683984.1 mRNA upstream 698374 30170254 ~ 30195378 (-) False LOC103038627
XM_022683982.1 mRNA upstream 698374 30170254 ~ 30195378 (-) False LOC103038627
TU283202 other downstream 1166137 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 2282179 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 2778295 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 3221638 26212058 ~ 26212841 (-) False G208046
TU283796 other upstream 552081 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 690577 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 690577 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 729725 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 1626964 31098844 ~ 31099861 (-) True G209224

Expression Profile