RNA id: XM_022683981.1


Basic Information

Item Value
RNA id XM_022683981.1
length 3964
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC103038627
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 30168101 ~ 30195378 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGTGGTCCACACAGAGCAGGCGGGTAAGTGAAGATGGCGGATTCGCCAAGTGTCGGGTTGTCTGAGGAAACCGAGTCAGAGAAGCACAAGCGGGGGCACGCGGCGTGTCTGCGGGGCAGTGCGGTGAGGACCCGCAAACCAGAACCGGCGGAAACGCTGGGCTTTTATGACCGACCGCCAGGAAGAGAGGAGCCGCGGGGGCGCTCAGGTGAGCGCGGGTCAGaggtgGAAGATGCTGAGGAGCCGTCCCTGTTGAGGTTTATGTGTGCAGAGCTGACCAGGGGCTACTTCCTGGAGCACAACGAGGCAAAGTacacagagcagagagagagagtctacaCATGCATGAGGATCCCAAAGGAACTGGAAAAGTTGATGATGTTTGGCATCTTCCTTTGCCTGGATGCATTCCTCTATGTGTTCACTTTACTGCCCCTCCGAACCCTGCTGGCCTTCCTGAGACTGCTGACCATACCCTGCTGTGGCCTCAGTGCACATATTTGCCCATACTGCAGAAGGAGCAGtgtttccCGATTCCTGCAGCCCGCCCAAGTGTGTGACCTGCTGAAAGGTCTGATCATGGTGATGTGTTACTTCATGATGCACTATGTGGATTATGCCATGATGTACCATTTAATCCGGGGACAGTCAGTCATCAAACTCTACATCATCTACAACATGCtggaggtggcAGACCGCCTCTTCTCATCCTTTGGGCAGGACATTCTGGATGCTCTCTACTGGACTGCCACAGAACCAAAGTCCAGGAAAAGAGCCCACATTGGAGTCATTCCTCATTTCATCATGGCTGTCTTCTATGTCTTCCTGCATGCCATCCTCATCATGGTGCAGGCGTCCACACTGAACGTAGCCTTCAACTCCCACAACAAGTCTCTGCTTACCATCATGATGTCCAACAATTTTGTGGAGATCAAAGGAAGTGTATTTAAGAAGTTTGAGAAGAACAACCTTTTTCAGATGTCTAATAGCGACATTAAGGAACGCTTCACTAACTACATCCTGCTGCTCATCGTGTGTCTGAGAAACATGGAGCAGTTCTCCTGGAACTCAGATCACCTGTGGGTGCTGCTGCCAGACGTCTTCATGGTGGTGGCATCAGAGATGGCGGTGGACGTCGTGAAGCATGCGTTCATCACCAAGTTTAACGACATCACTGCAGACGTGTACAAGGAATACAAGGCCAGCCTGGCCTTTGAGCTCGTCAGCAGCCGACAGCAGAATGCTTACACAGACTACAGTGATTCTGTGGCCAGAAGAATGGGCTTCATCCCGCTGCCGCTGGCTGTTTTGCTGATCCGAGTGGTGATAAGCTCAGTGAAGATCCAGGGGGCACTCTCATTGGTCTGTCTGCTACTCTTCTACCTGGGATTGATTACATTGAAAGTGTTGAACAGTATAATTCTGCTGGGGAAGTCCTGTAAATACGTCAAAGAGGCCAACATGGAAGCGAAGTTGTTCAATGGAGCCAACCAATCCAGTGCCACTCCAAAGAAGACCCCCAGCAAACCGACTACCACcacatctcctccccctccctcagGTGAGCCGAAGGTGCGCAGACAGTCTCCCTTCATCACCAAGCAACCCTCCCCCCGTACATCAGGGCCACTCCTCCCAGACCCGACTCCCATAACCAAAGAGACCAGTGAGCCTCCTCCAGAGAGCCCGTCTAAACCAGCGGAGGACAGCAGCGAGACGCCTCAGTCTCCTGAACTCAAACACAGAGCTCCAAAGAAAGACCTGCTGGAGATTGATCGGTTCACACTATGTGGGAACCGAATTCTCTGACCTCTGCCTGGAAACAGGAGCCAGGGTGACTTTTAATCCACAGAGTCAGCGTCCAGGGACTGAACTGTTTGGCAGCTGTGAGTATTTACCAGGGAAATCACAGTGACAATAAGTGCATTCCAGGAGCATGGAGGATCTGTTTGCCAATGTCAGCCTGGAGGATCACATTTCCAGAACTGGTCACTGTATGGAATGGATGGAAGTCAGGGTCCTCTCTTGTTTTTGGACTTTGTGAGTCCAGAGGGAGAAGTAGCACTTAATTAGCATGATTAGGAACAGGCGGAAATATgaaaaggaaatgggattttttAAAGTTAAGTAATTTTTGTCCTCTCAACATTTGAGGAAGGAAGATTCTTGCAAATTCACGAGTTGTAAAGCTAAAGAAAGACTAAAGTTTGAATGATAATAACATATTTGACTCTTCTTGTATAACGACTCTTCTACAGGCAGTTAAAATATCATCGCTGTCAAGCAAAAACCTTGCATCTTCAAGTTTTTCACTTTTCATTATAATTTGAATCTGATATCCGTACATTATGTCAGATTTTTGTAATGAATGGACCAGTATATAGAAACTTCATTTCATTCTATAGCAATTAAGCCAAAAATGTTTAccatgttgtcaaatttgcaaccagagtCTGTAACCAAGTCTCTCAGACCGCCTTCTTTGAGTTTACATCACAGCCTAAagaattgtaatatttttaacagtaaaagtgcagctttttatgtattttattaccaaGCACTGTACATTTCCATAAAATACAGAACCTGAGCTCAGATCTGTTTACCGCTGAGATGAACCAAAGCTACAACAGTCCAGTTTTAACCCTTAAGCTGCTGCTGTGACCattaaaagaagaataaattcTGAATTAATCTGTATTTTGACTAGGTCCAGACCACAAAAACTACCACTAATCACAGCTTATGTAGATACACTAGCCAATGTTAGCTCAGTGGCTAACATCCACCTAGATCACATTGGACCTTTACACTAGCATTagactggggaaaaaaaatgtaaagaacttTGTGCAGAGTGTCtgttaacttttttgtttttacacattgATTTCCATTCGTTTTTTTATTCTCCTGTAAAGCTGACATTTTGAGATACAAGGTATTTGCCTGACAGCGATATTAGATGGTGGCTAATTTATTCACTTACATTTAAAATCTACATGAAGCAAAATGTCTATTCTTACAGTCATACcataattaagtaaataagtTGGTGCTGGTCACATGGTTGACCACATGCTTTGTTCAAGTTGGAGGTAACTTCCAGCACACAGTGGAAAAGCCACAAACACCACAGCAAGTCTTCTTTACTCATCATTATCGTGTAAATAACATTCCATACCTACTGATGTTGAGTGATATTCACTTTTTGTAACATTTAGCCAAGTTTTATTGGGAAATTCCGCTTAGTGTGCCAAAAAGGTTAGTCCTTAATGCCGTTTTTAGACTAGACTCTTCAAAGTGCATTAGAATTAACATACATTGAAGTACCTGTATTATACTCAAATCATCACCAAATCATTCCCCAACAGTATCTTCTTATTAACTTGCTTCTGTCTGCGCTGTAGTTCGTTCATTATGACCTCTGCCAAGAATGCAGCTGAACCAGCCGGCAAAACGTTGCACTGATATAATGATCTACCGCATTGTCTTAAACTGTACAGTAGAAGTATCTAAAGCCTAGGTGCTTAATTTAACATTCGCAAGACACTCACATGCATGTTTACATCAGTTACTAGTAAGAGGAAAAGGCAGAGCTCTGATCTCTGTGTTCATAGTTTCATTATGTTGCTCTTCTGGTACAATATGAAGGAATTTCTGAGGTGTTTTAAAGGGTTATTTCACTGTTCTTTAAATTCTGCATGAGTTAGTTATTGAAAACAAAGTAATTCAGAGTGGTTTGGTTTGAAATTGTACATTGGTTGTAAACACAAATAttgatcttttatttattatctgaaattattacatttaaaagtacagtaagtacagtaaattattaaattagcaatattaaaatagtagtaaatataaatacaatagcTTTTCTGTTGAATCTGTTTAGATTCCCAAAACCTTTCATGTGTCTCTCTGCCgtgcatttataaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K23404 TAPT1; transmembrane anterior posterior transformation protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283831 lncRNA downstream 7771 30159877 ~ 30160330 (-) True G209124
TU283828 lncRNA downstream 11588 30155074 ~ 30156513 (-) True G209121
TU283810 lncRNA downstream 39440 30128178 ~ 30128661 (-) True G209104
TU283795 lncRNA downstream 145380 30022099 ~ 30022721 (-) True G209089
TU283787 lncRNA downstream 282927 29883646 ~ 29885174 (-) True G209082
XR_002651856.1 lncRNA upstream 128184 30323562 ~ 30327730 (-) True LOC111195840
TU283895 lncRNA upstream 241940 30437318 ~ 30437788 (-) False G209166
TU283893 lncRNA upstream 241989 30437367 ~ 30437788 (-) True G209166
TU283908 lncRNA upstream 547048 30742426 ~ 30742669 (-) True G209177
TU283917 lncRNA upstream 560928 30756306 ~ 30757507 (-) True G209184
XM_022684361.1 mRNA downstream 58061 30061148 ~ 30110040 (-) True LOC103023888
XM_022683978.1 mRNA downstream 696221 29434479 ~ 29471880 (-) False LOC103042757
XM_022683977.1 mRNA downstream 696221 29434479 ~ 29471880 (-) True LOC103042757
XM_022683974.1 mRNA downstream 1037828 29043975 ~ 29130273 (-) False LOC103039163
XM_022683987.1 mRNA upstream 6153 30201531 ~ 30318216 (-) False LOC103038932
XM_022683986.1 mRNA upstream 6153 30201531 ~ 30318216 (-) True LOC103038932
XM_022683988.1 mRNA upstream 167915 30363293 ~ 30390245 (-) True LOC103021866
XM_022683989.1 mRNA upstream 318529 30513907 ~ 30803356 (-) True fstl5
XM_022683991.1 mRNA upstream 1058969 31254347 ~ 31260863 (-) True LOC103031457
TU283837 other downstream 5128 30162457 ~ 30162973 (-) True G209127
TU283834 other downstream 5194 30162457 ~ 30162907 (-) False G209127
TU283796 other downstream 143551 30023961 ~ 30024550 (-) True G209090
TU283202 other downstream 1899759 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 3015801 27146036 ~ 27152300 (-) True LOC111195771
TU283818 other upstream 6227 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 903466 31098844 ~ 31099861 (-) True G209224
TU283995 other upstream 1078490 31273868 ~ 31274402 (-) True G209256
TU284055 other upstream 1322055 31517433 ~ 31517892 (-) True G209303
TU284258 other upstream 2760237 32955615 ~ 32956085 (-) True G209458

Expression Profile