RNA id: XM_022683996.1


Basic Information

Item Value
RNA id XM_022683996.1
length 4917
RNA type mRNA
GC content 0.58
exon number 26
gene id rapgef2
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 31290134 ~ 31382522 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTGGGAAGCGCTCTGCGGGAAGCTTGCGACGCGGATGTGAGTGCATCGTCCTGGAGCCGTCCGAGATGATTGTGGTGGACTATATGGACGAGAATGAGGAGTATTTTCAGCGCCAGGCGTCACACAGGCAGTCCCGCCGGAGGTTCCGCAAGATCAACCAGAAGGGCGAGCGGCAGACCATCATCGACACGGTGGACCCGTACCCCGCTGGCAAGCCGCCGGTAGCCCGCGGATACCACACGGAATGCGTTAAACCTCAGCTCCCGGCGGACTTCAGCAGACTGCACCTGGCCGACGGGATCCACCCCCAGGTGACGCACGTCTCCTCCAGCCTCTCAGGATGTAGCATCACCAGCGACTCTGGGAGCAGCAGCCTGTCTGACATCTACCAGGCCACTGAGAGCGAGCAGGGCGATATGGACCTCAGCGGCCTGCCTGAGACGGCCGTGGACTCTGAGGAGGATGACGATGAGGAGGATATCGAGCGTGCCTCCGACCCCCTCATGAGCCGAGACATCGTTCGAGACTGCCTGGAGAAAGACCCCATGGATCGCACAGACGACGACATCGAGCAACTGCTGGAGTTCATGCACCAGCTGCCAGCTTTCGCCAACATGACCATGTCGGTCAGGAGGGAGCTGTGTGCCGTCATGGTCTTCGCTGTGGTGGAGCGCGCTGGCACCATTGTCCTTAATGACGGCGAAGAGCTGGACTCATGGTCGGTCATTCTGAACGGCTCAGTGGAGGTGACGTACCCGGAGGGTCGTACAGAGATTCTCTGCATGGGCAACAGCTTTGGCGTGTCTCCCACCATGGAGAAAGAGTACATGAAGGGAGTGATGAAGACCAAGGTGGACGACTGTCAGtttgtATGTATAGCGCAGCAGGACTACTGCTGCATCCTCAACcaggtggagaagaacatgcagaaggtggaggaggagggtgAGATTGTGATGGTGAAGGAGCATCGTGAGCTGGACCGCACCGGCACTAGAAAAGGACACATCGTCATCAAGGGCACAACAGAGCGTCTGACCATGCACCTAGTAGAGGAGCACTCTGTGGTGGACCCCACCTACATCGAGGACTTCCTGCTCACCTACCGCACCTTCTTGTCCAGCCCTATGGTGGTGGGCAAGAAACTGCTGGAGTGGTTCCACGACTCCAGCCTCAGGGACAAGgtTACACGGGTAGTCTTGCTGTGGGTGAACAATCACTTCAACGATTTTGAGGGTGACCCCGAAATGACACACTTTCTCGAGGAGTTTGAGAACAATCTGGAGAGAGAGAAAATGTGTGGGCACTTACGACTGTTAAACATAGCGTGTGCTGCCAAAGCCAAGCTGCGGGTAGTGACCCTGACCAAGCCGTCGCGAGAAGCCCCGCTAGCCTTCACTCTGCTGGGTGGCTCTGAGAAGGGCTTTCGCATCTTCATCGACCACGTGGAGCCAGGCAGTAAAGCTGCTGAGGCAGGCCTCAAGCGTGGAGATCAGATCCTGGAGGTGAATGGGCAGAACTTTGAGAATGTGCAGCTGTCCAAAGCCAATGAGATCCTGAGGAACAATACACACCTATCCATTACTGTGAAAACAAATCTGTTAGTGTTTAAGGAGCTCCTGGCCAGGCCTGAGCACGACCAGGAACATGACCACGAGGAGGAACTGGACAGGAAGAACGGGGCACCGCACATTCCCAAAATCGGGGACATCAAAAAGGCCAGCCGTTATTCCATTCCAGACCTGGCCGTGGACGTTGAGCAGGTGATGGGTCTGGAGAAAGCCAGTAAAAAAGCCAAGGCCAACACAGTGGGCGGTAGAAACAAGCTGAAGAAGATCTTTGACAAGACTCTCACCAGTATACTCCCACCCAAACCTTACAATGATGTCGGCGTGGGTCAGTCCCAGGACGACAGCATTGTGGGCCTGAAGCAGTCTAAGCAGATTCCTCCAGCTCTGCCGGTCAGCGGAAACCTATCGTCCAGCAACCCTGACCTCCTCCAGTCTCACCATCGCATACTGGACTTCAATAACCAGCCTGACATGTCGGACCAGGTGCTGCGGGTGTTTAAGGCGGATCAGCAGAGTCGCTACATCATGATCGGGAAGGACACCACAGCCAAGGAGGTTGTGGCTCAGGCCATCCGGGAGTTTGCTCTGACCGCTGCTCCTGAAGCTTATTCGCTGTGTGAGGTGTCCGTCACACCCGAGGGCGTGATCAAACAGCGCCGGCTACCGGAGCAGCTCTCTAAACTGGCGGACAGGATCCAGCTGAGCGGCAGGTACTACCTGAAGAGCAACATGGAGACGGAGACGCTGTGTTCGGACGAGGACGCTCAGGAGCTGCTGAGGGAGAGTCAGATCAGCCTGCTGCAGCTCAGCACGGTGGAGGTAGCCACTCAGCTGTCCATGCGTGCCTTCGAGCTCTTCTGCGCCATCGAGCCCACGGAGTACATTGACGACCTGTTCAAGCTGCGCTCGCGGGCCTCCGGACCCTCCAGCCTCAAGCTCTTTGAGGAGGCCATCAACCGAGAGACTTTCTGGGTGGCAACTGAAGTCGTCAGAGAGCCCAACCAGCTGAAGCGCATGAAGATCGTCAAACACTTCATCAAAATCGCCCTGCACTGCCGAGAGTGCAAGAACTTTAACTCCATGTTCGCCATCATCAGtggTCTGAACCTGGCACCCGTATCCAGGTTGCGAGGAACCTGGGAGAAACTGCCCAGTAAGTATGAGAAGCTCTTCAGTGACCTGCAGGACTTGTTTGACCCGTCCAGAAACATGGCCAAGTACCGGAACGTTCTCAACAGCCAGAACCTGCAGCCGCCAATCATCCCTCTGTTTCCTGTCATCAAGAAAGACCTGACCTTCCTCCACGAGGGCAACGACTCGAAGGTGGATGGCCTGGTGAACTTTGAGAAGCTGCGCATGATCGCTAAAGAGATCAGACATGTGGGCAGGATGGCGGCGGTGAACATGGACCCTGCACTGATGTTCCGCACCAGGAAGAAGAAGTGGAGGAGTTTGGGGTCTCTCAGCCAGGGCAGTGCCAATGCGGCAGTGCTGGACGTGACCCAGACGGGTGGCCACAAGAAGCGGGTGAGGCGGAGCTCCTTCCTCAACGCCAAGAAGCTGTACGAGGACGCACAGATGGCCCGCAAGGTGAAGCAGTACCTGTCCAACCTCACGCTGGAGACCAACGAGGAGAGCCTGCAGACGCTCTCCATACAGTGCGAACCCTCCATAAACACTCCAGTACCTAAGGGCTCCGGGGACAGAAAGAGGCCGGACACGTCTCCAGTGGTTGCACGAGCGGCCGCCCACCAACGGCAGCAGCTCCAGAAGCCCAACCAGGCCCTGCAAGTGCCCGCCGTCGCCCTCTACCCCTCCCGCAAGAAAGTGCCCGTCAAAGACCTGCCGCCCTTCGGCACGAGTTCTCCACAGTCCCTGAAGAAGATCCTGTCTCTGTCAGAGGAAGCCAGCGATCGGCACAGGAAACAAGCAGACGATGCCGTTTCCAACGCCTCCTCTCAGCTTTCCTCTCCTCCCACGTCTCCACACAGCTCGCCCAAGAAAGGTTTTGGACGAGCAGGTGACAATCTGTCTGACTCAGGCCACAGCGAGATATCATCCCGGTCCAGCCTGGTCAGCACCTCGTCCCTGGACATGGGTCAGGACGAGCGGCGGCACCGttatggaggaggaggagagggtcACGGCGGGGTTCACCGGCTTGAGCGCAGAGCGACAGCTGATCCAGACCAGTACAGCTTGGGGTCGTACTCGTCCATGCAGGACTGTCGGGGTGTGTACGCTGGAGCAACGGTGCTTTCTTCACCCAGCTCAGAGGAACTGACCCAGGACCAAGGAGACCGCGTCTCTCTGGACGCTGCAGACTCTGGACGAGGGAGCTGGACGTCCTGCTCCAGCGGTTCCCACGATAACATCCAGACCATGCAGCAGGGCCGCAGCTGGGAGGTGCTAGCGGAAGGGGCCGGACTGTGGGCGGGCCGAGGCAGCTGGGCGTCGGCCTGTTCGTCCTCATCCTCGTCGGCGGCCTGCTGGGGGGAGGATTCAGAGGGTGATACAGGAACCATAAAGCGGCGAGGGGGAAAGGACGTTAGCGCTGACCCAGAGACCAGCAGTATCACCTCCACAGGCTCCGAGGAGTCCAAACAGCACAGCCGACGCCCGTCACCTATCACCGCTGGGAACGCCAAGGGTGTGATCACACGTAAAGACGGCCGGTACCGCGACCCCCCGCCCACGCCTCCGGGTTACACAGCGCTGACCATCTCAGACGTGACTGAGGGGGCGGCCCACGCTGGCCGGAGGCCGCCGGACTACACCACGGCCCTGCAGCGCTCCCGTCTGGTCACACACTCGCCCGACTCCCAGCAGCCCCCCACCGCAGGCAAGCCGGGGCCGTCGGACCTCCGCGGCTCAGCGGAGGACCAGGCACAGGAGGTGGAAGAGGAGGGTGAGTGCTTGTCTCccaaactcagagctcagaggaggagaggcccacacacagcagtgcCCCCCAGGCCATGAGTTACACACACCACCCCGGCAGGCAGAGGATGAACAGGTGTCAGCCGTGTGAAGGGGAGAGCACTCTCTACTGTTGGACACTTGGCGCTGTGACCCAAGGTCTAGTACAGGGCCTCTGGAGGCAGACAGACAGCCAGAGCAACCAATCATCATCTCAGCGGCACTGCCTGTCTCCCTCCTCAGCGGTGGATTCATCTCCCTTCCCTGCCTTAATTCATCATGAGGGGTCTTGTAGCCCTGCATGCTAAAATACTGTGAAGAAAGGaggagaatgaaaaaaaaaaagaacagaagaaaaataagCAAGATACTTGGCACTTTGGAAAATCGTACTTGTCcataagaaaagagaaaagaacgaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284001 lncRNA downstream 4774 31285152 ~ 31285360 (-) True G209261
TU283993 lncRNA downstream 17786 31271836 ~ 31272348 (-) True G209254
TU283972 lncRNA downstream 72986 31216615 ~ 31217148 (-) True G209236
TU283941 lncRNA downstream 269754 31020100 ~ 31020380 (-) True G209208
TU283922 lncRNA downstream 452394 30811716 ~ 30837740 (-) True G209189
TU284053 lncRNA upstream 133437 31515959 ~ 31516197 (-) True G209301
TU284056 lncRNA upstream 136510 31519032 ~ 31519276 (-) True G209304
TU284081 lncRNA upstream 363063 31745585 ~ 31745994 (-) True G209329
TU284193 lncRNA upstream 1256302 32638824 ~ 32639902 (-) False gar1
XR_002651803.1 lncRNA upstream 1317539 32700061 ~ 32701470 (-) True LOC111195779
XM_007238211.3 mRNA downstream 7553 31277177 ~ 31282581 (-) False LOC103032100
XM_022683992.1 mRNA downstream 7553 31277177 ~ 31282581 (-) True LOC103032100
XM_022683990.1 mRNA downstream 23179 31264571 ~ 31266955 (-) True LOC103031775
XM_022683991.1 mRNA downstream 29271 31254347 ~ 31260863 (-) True LOC103031457
XM_022683989.1 mRNA downstream 486778 30513907 ~ 30803356 (-) True fstl5
XM_015604856.2 mRNA upstream 694069 32076591 ~ 32116564 (-) False LOC103044229
XM_015604855.2 mRNA upstream 694069 32076591 ~ 32116564 (-) True LOC103044229
XM_007245535.3 mRNA upstream 1210175 32592697 ~ 32601011 (-) True LOC103043705
XM_007245534.2 mRNA upstream 1219687 32602209 ~ 32609908 (-) True LOC103043395
XM_022684003.1 mRNA upstream 1232398 32614920 ~ 32626576 (-) False LOC111195776
TU283995 other downstream 15732 31273868 ~ 31274402 (-) True G209256
TU283958 other downstream 190273 31098844 ~ 31099861 (-) True G209224
TU283818 other downstream 1083484 30201605 ~ 30206650 (-) False LOC103038932
TU283837 other downstream 1127161 30162457 ~ 30162973 (-) True G209127
TU283834 other downstream 1127227 30162457 ~ 30162907 (-) False G209127
TU284055 other upstream 134911 31517433 ~ 31517892 (-) True G209303
TU284258 other upstream 1573093 32955615 ~ 32956085 (-) True G209458
TU284339 other upstream 2219577 33602099 ~ 33604989 (-) True G209529
TU284514 other upstream 2788245 34170767 ~ 34212849 (-) True G209640
TU284515 other upstream 2788245 34170767 ~ 34212849 (-) False G209640

Expression Profile