RNA id: XM_022684024.1


Basic Information

Item Value
RNA id XM_022684024.1
length 1640
RNA type mRNA
GC content 0.46
exon number 7
gene id ctso
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 35147631 ~ 35167225 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtaaaataatacatttttaaaaatgtaacctTCTCAACCCTTTCTATAGAGTTAACAGCTGGCAGTTGCCTGTATGGTAATACAGTACTGCGGCCAGCAGGAGGCGATAGAGCTCTGTATCTGTATGATCTCACTCTCAGCTGAGGGGCGGAGCTTAATCTGctctgaaagtgaaagtggaGGGCTGGAGGAGCTTCAGCGGGGTGAGCTGGTGTTTATCCGGGTGAATGGCTCGTGCAGCAGCGGTTACTGGTTTATTATGGTGCCAGTTTGTGCTGGTCCAGTTCTCCAGTGGAGACGTGCTGCACGTGCCTGAGGAGCTCGCTCAGGAAGCGACCTTCATCAGGACCTCAAACACAGGGGAAGATAACACGACATGGAGCCATATACAGGCTTCAGTCAAGAGGCAGGCCTTCCTGAACTCACACTCCCAGAACTACAAGCAGCCCACCAAATACGGACCCAACCAGTTCTCCCACCTCTCACCACATCAGTTCAAAGatctATATCTCCGGGCCCGGCCTGAGGTCGTTCCCAAGTACAATTCGACCCGATTCGGTCACCTCAGGTCAAAACCTTGTCCTGCACGGTTTGATTGGAGAGAGTATAAAGCCATTGGACCGGTTCAGGACCAGGGCTTGtGTGGGGGGTGCTGGGCGTTCAGCGTGGTGGCTGCTATCGAGGCGGTTGAAGTAAAGGATGGAGGAACTCTGCAGGACCTGAGCGTTCAGCAGGTCATCGACTGCTCTTATATAAACGCCGGCTGTAAGGGAGGATCCACTGTGTCCACGCTGAAGTGGCTCAAACAGTCTAAGATGAAGCTGGTGAGAGAGAAGCGGTACCCATATAAGGCTGAGACGAAGATGTGCCAGATCTTCCCTCAGTCCTTCGGCAGCGCCTCGGTGAAGGACTACTATGCATTCGACTTCAGtagTCAGGAGGAGCTGATGATGCAGTGGTTGGTGTACGCAGGGCCGCTGGTGGTGATTGTGGATGCCGTCAGTTGGCAGGATTATCTCGGAGGAGTCATTCAACACCACTGCTCCAGTCGCCATGCCAACCACGCTGTCGTCATCATCGGCTATGATATTACagGCGAGGTGCCGTTCTGGATCATTCGGAACTCCTGGGGGAAGTCCTGGGGTGACGGGGGATACGCGTACGTTAAAATGGGAGAGAATATGTGTGGTAAGCTCAAACAGAATTAACAGAAGGTCAGACTGCATCATTACTACAGCTCAGTTTACTCCCTGCACACTATAGAACTGTATTCCAGTACTTCTCAGCTACTGCTGTCACATTCCTCTCACTGTGTTAGTATAGATACTTTCAGTGTGatgtattaaaatatgataTTCAAGTATTTAAGCGTAAGTTCCATTAATAATGCAAACATCATTGTTTGAATAAATATAAACGTAtgaatgttatttatattacatattaataattCCAAAATATGCTTTTCTTAAAGTGATGTTTTATCACTCTTAACTATAAAATTCTGATGTTTTATTGAtgctttgtaaataaaaatgcgtttgttaaaaaaattatgtttaattttttgtatttcctttcatttcattcagtatattttacatttacttgaTGCAGCATAAAATTGGCAGTTTGTCAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01374 CTSO; cathepsin O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284808 lncRNA downstream 7325 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA downstream 10593 35136218 ~ 35142312 (-) False LOC111195784
TU284811 lncRNA downstream 12798 35139450 ~ 35140107 (-) True G209872
TU284805 lncRNA downstream 14819 35136254 ~ 35138086 (-) False LOC111195784
TU284746 lncRNA downstream 519689 34632785 ~ 34633216 (-) True G209814
TU284846 lncRNA upstream 141110 35308319 ~ 35308594 (-) True G209894
TU284877 lncRNA upstream 480193 35647402 ~ 35648209 (-) True G209924
TU284882 lncRNA upstream 535580 35702789 ~ 35703454 (-) True G209929
TU284901 lncRNA upstream 668994 35836203 ~ 35836645 (-) True G209946
TU284906 lncRNA upstream 706666 35873875 ~ 35878253 (-) True G209951
XM_007245508.3 mRNA downstream 367238 34774062 ~ 34785667 (-) True aga
XM_022684016.1 mRNA downstream 393814 34741691 ~ 34759091 (-) True LOC103045435
XM_022684015.1 mRNA downstream 421069 34727162 ~ 34731836 (-) True spata4
XM_007245511.3 mRNA downstream 444849 34676126 ~ 34708056 (-) True gpm6a
XM_007245512.3 mRNA downstream 478698 34659490 ~ 34674207 (-) True LOC103036564
XM_007245505.3 mRNA upstream 1331 35168540 ~ 35236306 (-) True rnf130
XM_022684026.1 mRNA upstream 5010 35172219 ~ 35263408 (-) False rnf130
XM_007245506.3 mRNA upstream 5010 35172219 ~ 35236307 (-) False rnf130
XM_007245504.3 mRNA upstream 5010 35172219 ~ 35236305 (-) False rnf130
XM_022684035.1 mRNA upstream 1522390 36689599 ~ 36691324 (-) False LOC111195785
TU284750 other downstream 402699 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 515606 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 520587 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 878312 34234918 ~ 34274593 (-) True G209660
TU284515 other downstream 940056 34170767 ~ 34212849 (-) False G209640
TU285068 other upstream 1543211 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 4360424 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 4446509 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 4479145 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 4765929 39933138 ~ 39940047 (-) True LOC103023530

Expression Profile