RNA id: XM_022684037.1


Basic Information

Item Value
RNA id XM_022684037.1
length 4174
RNA type mRNA
GC content 0.43
exon number 23
gene id LOC103023303
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36827891 ~ 36836649 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCATAAACCACACTCTTGTGGAAAAAGCTCTTCAAGCACTTGATATCACAGACAGTGGTGTTGTCACTCATGATGACCTAAAGTCAGTCCTGAGCAGTTTCCTTTTCCCAATCAGTGACAACACTTTTCTGAGTCTCTTGAGCAGGTTTGGGCTGAACCCCACAGAACCTGTGGAGTGGAGAATGTTCATTGATCTGTTCAGAGAAAAGGAACAGATGCTAAGTGTTGGAAAAGACCCAGATCCTTCTACGCCTGACTTTTCCAGTATTGAAGAAGTCTTACCAAGGTTACAAGAGCAGATACTTAAGgtttttcctcttctgaagaAAGGTTTCCTGGTATTTGATGAGAACAGAATAGGAGTGGTCAGCAAAGCTGATATGCGGCGAGTTCTCGAGGGTTTGACCTTCAGGCTGACGGATGAGCAGTTCAGAGGGCTGATAGATCTCATATATGTAGGAAACTCAGGAACTATCTGCTACCAGCCCTTGTTGGACTTTTTCCAGCAGCAAAAAACATCTGTGgatGAGAAGCAGTATAGCAAGTTTACAGACCAGACAGACACCCAGTCTCAGCCTTCTACTGCACCTCCAACAGCCACTGCTGCCTGGAATACAGTGGAGGGGATTCTTAAAGAGAAGCTGAATGAGCAACATGACTTGTTTCTGCAGTCTCTAAGCCAGACAGACCCAACTCAGAGCTGCAAAATCCCTATTGAAGCCATGAGgacactgctccagcagtatgggTTACCTCTATCTGACAGACACTTCAATAATCTCTGTGAACCATTCACTGAATCTGGAGAAGTGAACTACAAATTGTTGCTGGTCAGCCTTGGCATCTCCATGAAGAGAGACACCATAAAGTGTGCTAACAAGAGTCCTAGCCCAAGAGAGAGAAATGAGAGTGTTTGTGGAGCTCATGCAGAGACCATGAGAAGACAAGCTGTGGTAAATGTTGTTCTGAGGAAGCTCAGAGACAGGCTGCAGGTGCGTGGGGTCACTCTTGAGCACTGTCTAAAGGCCAATGGCAGAAGTTCCGCAGCAATACTTAGCTTGCAAGACTTTCAGAAGATTCTGGACGAGTGTAGAATTTCCCTGCAGGAATCTCAGTTTCAGACCCTCATCCAGGCTCTTGGTTTCTATGATGGACAGGTCTCTTTTACTGAGTTTGTAGCCAAATATGAAGAGTCCATATCAAAAGACAATAATGAAGAGGAAAGAAGAATACTGAACTATATTGAAGCCAACAGCTTTATGTCTGCTGAGGACTGTTTCAGTCAGCTTGAGAAGAGGATAAAAGAATGTCATGGGGATGTTTTAACAGCGTTTCGTCTGATGGACAAGAACAGAGATGGGCTGGTGAATCAGACTGACTTCCGAGTTCTGCTTGACAGCTTGATGTTTGTCACTAAGGAAAAGGAGTACCAGAGGGTGTTGGAGCTGATGGGATTTAAGCCTGGCTCCAATCTTAACTACACTGAGTTCCTCCACAAGATCCGGTCTaatgagaaaaacaaaatacagccCATCGCTAATATGACAGATGATCAGTTGCAGGAGCATGCATGTGACCAGGTTCATGCCTATTTGGTGGACAGTGCACGCACAGGATGGTCAGAGTTTTCAAAGGCATTCAACCAGTATGGTGAGGCTGGTGAAACCATAATCACCAAAAATGATCTAAAGAATATTCTTTACAAATACTCCTTACCCATCACTCCAAGAGTGTTTGAGAAAATATGGACAAGATATGACAATGATGGAAAAGGACACATCACTGTGACAGAGTTCCTGGATACGCTGAATATTACACCACAAGAGTTTACAAAGCAACATGATGATCCACCGGACTCCAACCAGACCTTGAACACATCTTGCATGACCCCTCTGATGGACACCACTCTGCACAAGCTACAGGACTGGTTAAAACTTAGCTTTGAGGATGTGTGCAGAAGTCTGGTGGCAGCAGACAAGAAGCATGATGGTCATGTTACTGTGTCAGACCTGCTGTCTCTGTTACAAAAACATGGCTTTCGGATAGAAGAGTGTCAGTTATTGCACCTAATCAACAGCATTGGAGTCGATGTCTGTAACAGTAAGCTGTCTTACCTTGACTTTCTGAAGTGTCTTACTGGTCTTGTGGTCAGTAGCAGGCCTGAAGTATCGTCTCAGGTCAGTCAAAATCTGAAAGTCAGGTCTACTACAGCTGGAGAGGATGTAGAAGAGCTCAGCCCTGAGAGAGCTTTACAGAGAGTCAGAGAACTGGTCACCACCTCCTCACTTACTCTCTCCAAGGCTTTTAAAGCATTTGATAAGTCTGAAGATGGCAAACTATCACAGTCCGAGTTTCGGCGGGTGCTCGACCACTTCTGCGTCAGGCTCTCTGATGTGCAGTTCAGGAAGCTTCTTTCTAAGCTGTCAATCAAAGATGGAGAAGAAACCACGGTGGTCTGGAAGGAGtttatgaatacttttgaccTTTGCAATCAAGAGACATCAAAAGAATGGCTGGAGAAAGTCCAAAGGTTACGCTTCCCTAACCAGGCCAATCCTGTGCCAATCAGCGATATTTTGAAACGGATCCAAGATGTAGTCTCTGGCCACCTTTACACCATCACCAAGGAGATGATGGATCTAGATTATGCTAGCATTAATACCATTTCAAAAGAGCACTTTAAGGTCTTCTGTGACCACCACTTCATGAGACTCTCTGCTGATCAGTTTGAAAAGCTATGGAAATTGTTGCCGGTCAATGCCTATGACAACCTAAATTACCGTGAGTTTCTGAAGAAGTTCAGCGGAGAACTAATAGAAAAGGAAAAGCCTGCAGCACCACCTACTCCTGAACATTTAGGCCTATCAGAAAGCTCACCTGCTGTTCTCCTGCAACGACCCAAAACTGCATCCTGCATCCCTGAACGGAGCAAGTCGTTAAGCCCAGAGCAGCTCAAGCGTCCCTCCACTGTATGTGGGAGGCTTTCTGTGGTCCTGTCATCAGACATAGCTGCTGTAGAGCGGAGGCTACGCTTCAAGATCCGCAGCTGCTGGAGGGAGATCCAAAGGAGGTGCAAGGAGGCCGACACGCAGAGAACCGGAGGGATTGAAATAGAGGCTTTCTTAGatATACTGAGGGACCTCCACATTGACGTAACCCAGTCCCAGTTTGAGCAGCTGTCTGAGAAGTATAACCTGAAAAACAAAGGCCGTCTCTCCTACCCAGAATTCCTGCAGAACTTTGTGCTTATGCTTAAACCTAACGCCCCCACCTTCACAGAGAGACGCAGGCTACACCTGCCCAAAACTCCGATGAGTGCAGGGCCTCTCAGTAGGCAGTGTACGGATGCCTTGCTCAGATTGTGTTCTCCAATCCAGCTACGCTGGAAGTCCATCAAGCGAGCGTTTGTGTTTTATGACAAAGAGCGCACAGGAAAGATTCCTCTCCAGGAATTCAGAAAGGTTTTGAGACAGCACAATGTAAATCTCTCAGAGGAAGACTTCTTTCAtcttgcatctttttttgaCAAAAACATCTCAGGAAATATTTCGTACAATGAATTTCTATGCATTTTTCAAAAATGAGGAGCATAACTTTACCTCTCTCTTCTTTAAAGTGTGGCACACAGATTTGTACCGATTGCCTTAATTATTTAGAAAtgggaatatatattttaaattacttattttgtaaGAGTTAATTAACTAGTAAGAAATGTTATTAAGAACAGCCTACTTGAAAGAGAGTCTTACTTAAAGGACTTATCTTAAACTGATAATGATAAAGACCAAACAGAGGGCATTACCACAGCACTTAATCATGCAGGTTCAATAAAACGCAGAGACAtcttaaaggttttttttttaaaagaaattctATGATATAGTTTTGACGTAGATAGATGAATATTAACTCATGATGTAATACAACAATAATATAAACTGTAGAATATGTTTtgaatatttattgaacatatATATTGAATATTCATGTCAGGTCCAAAGTCCCAGTTATGGCTCTATTGCATAATAGTTATTTGTAAGAATTGTCAGTGACACTGACCTTCCACCTCTTTGTagatgtttttttccccaaagcCTCTCCAATTCAGGAGTTTGGACTCAGTGCAGGACATGAGAAACATGTTTACCTCAAATAAAGAGTGGAACATT

Function

GO: NA

KEGG:

id description
K23851 EFCAB6; EF-hand calcium-binding domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285132 lncRNA downstream 5785 36815671 ~ 36822106 (-) True G210107
TU285129 lncRNA downstream 17407 36809311 ~ 36810484 (-) False c24h12orf73
TU285135 lncRNA downstream 22439 36805131 ~ 36805452 (-) True G210110
TU285088 lncRNA downstream 56894 36769669 ~ 36770997 (-) True G210076
TU285085 lncRNA downstream 60340 36765414 ~ 36767551 (-) True G210074
TU285146 lncRNA upstream 34930 36871579 ~ 36871944 (-) True G210120
TU285245 lncRNA upstream 271051 37107700 ~ 37108089 (-) True G210169
TU285249 lncRNA upstream 291045 37127694 ~ 37128205 (-) True G210173
TU285275 lncRNA upstream 328400 37165049 ~ 37167366 (-) False LOC103033395
TU285279 lncRNA upstream 391612 37228261 ~ 37228612 (-) True G210197
XM_007252896.3 mRNA downstream 17395 36809307 ~ 36810496 (-) True c24h12orf73
XM_007252897.3 mRNA downstream 17966 36809307 ~ 36809925 (-) False c24h12orf73
XM_007252895.3 mRNA downstream 23589 36793382 ~ 36804302 (-) True LOC103044642
XM_022684365.1 mRNA downstream 35088 36790029 ~ 36792803 (-) True LOC107197706
XM_022684035.1 mRNA downstream 136567 36689599 ~ 36691324 (-) False LOC111195785
XM_022684046.1 mRNA upstream 115232 36951881 ~ 37003635 (-) False LOC103039285
XM_022684044.1 mRNA upstream 115232 36951881 ~ 37000317 (-) True LOC103039285
XM_022684045.1 mRNA upstream 115232 36951881 ~ 36975557 (-) False LOC103039285
XM_022684366.1 mRNA upstream 167259 37003908 ~ 37038731 (-) True LOC103034997
XM_015605100.2 mRNA upstream 235937 37072586 ~ 37082206 (-) True eef1g
TU285068 other downstream 117148 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2077685 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2190592 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2195573 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2553298 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2690984 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2777069 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2809705 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 3096489 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3524609 40361258 ~ 40363237 (-) True G210991

Expression Profile