RNA id: XM_022684045.1


Basic Information

Item Value
RNA id XM_022684045.1
length 3021
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC103039285
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36951881 ~ 37003635 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTATGTCAGATATCATGGCTGCCACAGACAGGCTGATTTTGACCAGTTACTCCAGGATGAGCTCCAACTGCTCAGACGAGTTTTTCCAGGCCACAAACCATGCGGAACAGACCTTCCGCAAGATGGAGACCTACCTGCAGCACAAGCAGCTGTGTGATGTGCTCTTGATAGCCGGAGATCATAAAATCCCTGCGCACAGGCTTGTCTTAAGCGCTGTTTCTGACTACTTTGCTGCCATGTTCACCAACGATGTCCGAGAAGCGAAACAAGAGGAGATCAAAATGGAAGGTGTCGACCCAGAGGCCCTGAGATCATTAGTTCATTTTGCATACACTGGTGTCCTTGAGCTGAAGGAAGAGACGATCGAGAGCCTATTAGCTGCAGCGTGTCTTCTTCAGCTCTCACAAGTTATTGAGGTCTGCTGCAACTTTCTAATGAAACAGCTACACCCGTCCAACTGCCTGGGGATCCGCTCGTTTGCTGATGCTCAGGGATGCATGGATCTGCTGAACGTGGCCCATAGCTACACCATGGAACACTTTCTAGAGGTCATTCAGAATCAGGAGTTCCTGCTGCTTCCTACCATGGAAATAGTGAAACTACTGGCCAGTGACGACATCAACGTCCCCGATGAAGAGACTATTTTCCAGGCGCTGATGATGTGGGTTCGCCATGATGTGCAACATCGGCAACAAGACCTGGGAGTTCTGCTTGCATACATTCGTCTACCCTTACTGCCACCTCAGCTTCTTGCTGACTTGGagaacaataaaatgttttctgaAGATCTGGAATGCCAAAAGCTACTGATGGAGGCTATGAAGTATCATTTGTTGCCAGAGCGCCGGCCAATGCTACAGAGCCCAAGGACCAAACCACGTAAATCCACTGTTGGGGCACTTTACGCTGTAGGAGGAATGGACGCCTCAAAAGGTTCCACAACAATAGAGAAGTATGACCTTCGCACCAACACATGGATCCAGGTCGGCATCATGAACGGCCGGAGGCTACAGTTCGGTGTGGCAGTTATCGATAACAAGCTCTATGTGGTTGGGGGAAGGGATGGCCTGAAGACGTCCAACATGGTGGAGTGCTACGACCCAATTACTAAAGTGTGGTGCACTATGCCCCCTATGTCAACTCACAGACATGGGCTAGGGATTGCTGTGCTGGAAGGGCCTATGTATGCGGTGGGAGGTCATGATGGATGGAGCTATCTGAACACAGTGGAGAGGTGGGACCCCCAGGCCAGACAGTGGAATTATGTGGCTAGTATGTCCACTCCTCGCAGCACTGTGGGAGTCACTGCTCTTAATGGAAAATTGTTTGCTGTGGGTGGTCGTGATGGGAGCTCCTGCCTGCGGTCGATGGAATGTTTTGATCCCCATACAAACAAATGGAGCATGTGTGCACCAATGGcgaagaggagaggaggggtAGGTGTGGCCACATACAACAGTTTCCTCTATGCAGTCGGTGGCCATGACGCACCCGCTTCAAACCACTGCTCTCGCCTGTCCGATTGTGTGGAGAGGTATGACCCAAAAACAGACACGTGGACCACGGTGTCGTCCCTCAGCGTGCCTCGTGATGCAGTGGGAGTGTGTTTGCTCGGGGACAAACTGTATGCGGTTGGTGGCTACGATGGCCAGTCCTACCTGAACAGCGTGGAGTCCTACGATGCACAGAATAACGAGTGGACAGAGGAGGTCCAGCTGAATATCGGCAGAGCCGGGGCCTGTGTGGTTGTGGTGAAATTGCCTTGAGCGCTGAGGCTTTCGGAGCCGTGCTCTTACAGCAGACACACCAGCAgtagagaacaaaaaaaaaaaagaaaagaaagaaaaactctTGATGTCAACACTCGGAATGTTCCTTCATGTTCATTCCTCTCTCGCTTGGATGACAAGAATGTGAGAGGCCTAATAGTTGAGAGTTGCTACAGTAGACAGAGAAAAACAATGTGATCTATTCATTCACTCCATACCTTACTTTACAGATCAGAATTTTtcatatacagatatatatgaACCAGTCAGAGTTATTACTTCTCATCTCCTGTTTACCTCACTATATACTGCATATTTTGTTTACCTCATCATACAGTTTGAGGTCTGTATTATCATGTGTTACTAACTTTCAATGACATACAATTGAAATTCTCAGTATTTTTAAAGAATGCGACAGCTGCATACTTTAGTTGTTTGTCTTTCATTTCaagtcttttgtggaaaaaaaaactaaacaaacaaatgtaattTCACTCTtgaataatgcatttttaaagacCACTGTGAGAACATCCAGTTGTAAACGTGCCAGCTAAGCTCTTACCTTagagttgttttattctaaaccCTTCTGGAGATCATTCATGCACAGACGTCattaaaaaaaggggaaaaaaatacacttttattgtCAGATTAGATAGAGCACgggacattttttaaacaagctgTCTTTTGGAAGTAGCTGCAAAAACACCAAAGTAATTACCACGTGATAGTAGTCATGACTTTCAACGTTTACAAAATAGTGACTTTACGAATATATCATATTGATATTTCACATAACTGtatatttcttttgtatttaagccatgtatatatttcctgaATCTGTGTTACATGTAATTTATGATCACGTTATTTTTGGGCATGCTACTCCACTTCAATATTTGAATGCCGTTCTGTAATGCTTTCTTCTGctacaaaacataaaactgtTTACAGCACAGGTCagcactgatgattttattagaattttaacatttttcatatgatgtttaatacatttttttctgtccttGCCCATGTAGATGAGCATTTCACATGTAACACTGACCTGAAATTTCTGAATTAGAGTTTAACTTTAGGGAGTCTAATACgtatctattaaataaattttgCAAAGTGAGGTTTTGTAGAAAGTAAGATTCataaattcaatatacttcaattttcattattttgtatagcatgcaaacataaataaaataaacttttgttttctcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285146 lncRNA downstream 79937 36871579 ~ 36871944 (-) True G210120
TU285132 lncRNA downstream 129775 36815671 ~ 36822106 (-) True G210107
TU285129 lncRNA downstream 141397 36809311 ~ 36810484 (-) False c24h12orf73
TU285135 lncRNA downstream 146429 36805131 ~ 36805452 (-) True G210110
TU285088 lncRNA downstream 180884 36769669 ~ 36770997 (-) True G210076
TU285245 lncRNA upstream 132143 37107700 ~ 37108089 (-) True G210169
TU285249 lncRNA upstream 152137 37127694 ~ 37128205 (-) True G210173
TU285275 lncRNA upstream 189492 37165049 ~ 37167366 (-) False LOC103033395
TU285279 lncRNA upstream 252704 37228261 ~ 37228612 (-) True G210197
TU285314 lncRNA upstream 323557 37299114 ~ 37301802 (-) True G210223
XM_022684037.1 mRNA downstream 115232 36827891 ~ 36836649 (-) True LOC103023303
XM_022684040.1 mRNA downstream 123882 36822283 ~ 36827999 (-) False LOC103023613
XM_022684039.1 mRNA downstream 123882 36822283 ~ 36827999 (-) True LOC103023613
XM_007252896.3 mRNA downstream 141385 36809307 ~ 36810496 (-) True c24h12orf73
XM_022684366.1 mRNA upstream 28351 37003908 ~ 37038731 (-) True LOC103034997
XM_015605100.2 mRNA upstream 97029 37072586 ~ 37082206 (-) True eef1g
XM_007246459.3 mRNA upstream 108419 37083976 ~ 37086979 (-) True polr2g
XM_022684047.1 mRNA upstream 124738 37100295 ~ 37106457 (-) False LOC111195788
XM_022684048.1 mRNA upstream 124738 37100295 ~ 37105060 (-) True LOC111195788
TU285068 other downstream 241138 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2201675 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2314582 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2319563 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2677288 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2552076 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2638161 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2670797 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 2957581 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3385701 40361258 ~ 40363237 (-) True G210991

Expression Profile