RNA id: XM_022684090.1


Basic Information

Item Value
RNA id XM_022684090.1
length 2329
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC103030807
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39836297 ~ 39842575 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAATTGTAAATGAATCTGCTGTTTtataactagctagttagctaacaagcAAACGTTACCTCAGTGTTTCCTACACCAAGCAACAGACTGTTCTCACAATGGTCCACCAAGGAAAAGGGTTGGgttattagGTTGCTGATGATTCTGTGTAAACGCAACAAGCCTCAGAGGGGAGGAGGCTTACTGGTTCTACTGTGTACCCAGTACAGTTCCACTGGCACACAGCTGACATGCACTGTTGCAGCTGCTGGAAAATGGTTTGTCAGAATTGCCAGACACAGACAAATGGCAGAGGCTTTGGAGCTACTTCCTTCCTTTATCTCTGTCTGTGAGTGTCCTTGTCAAGAAGAGCTCTACAAGTTTTCAGAAAATGTTGGGTCTTTACATTTCACCTGCTCCTTCCAGGTAGATCAAGGGAGCCAGGATGTGGAATCAAAGATTGAGAGATTTCTTCAAAGAGTCAGTCTAGTTAATTCTCAGGTTGAAATAATTTTTCAAGTAAAGAAGAATGAAATCACACAACAACAAATATTCAGCAGCAAGAGCAGATGTCTGATGGATTATTTTATTGCCAAGGACTGTGCTGCATTTATCCAGAGTACATTCTCTGTGGGCTGTCTCCCTTCCTGTTGCCAGATGCATCTGGTTTTTGGGGAGAAACTCCATCTCTTGCTTCCCTCTGAGGCTGTTGAGGCTGGGTTGTATGGGGAGATAAGTCTCACTTGCCTGGCAACCCTTGGACCTTGCATGAACCACTATCCCAACTGGCCAGCTCGTCTATCGCATATACAcGTGTTAGCATATGGTCCAAGTGGAATTCCCATAATGCGAGTAGAGGAACAGACACAGCTAAGTTTCATCCAGAGCTTGGCAGATCTGCCATTTTGGAGAAAACTAGGTCTGACTGGAGTCTACTGTGCTTATACAGACACTGCACAGGGctctcagttttatgaggtggAGTTTTCTACAGAAGATGAGCACCACCCAGATACTGAGCCTGCACAGAGCCAGGCTGTGAGTGAGGATCCAAAATCTGAAGTCCCTGCTGTGGAGCAAACCATCACTGTTTTACTTCTCATTCAGCACAGCGACCCTTTCCACTCTCAGCTCTTTGACTTTATCTcGAGTGAAGAGATTTTAGAGACGCAGCTGGACAGTGTGCTTTGGTGCAATGCAAAGAAAGTGAGATTGGCCCTGCAGTCTCTACTGGAAAACACCCTCAAGGGATTTCTAAACAGAAAGAAGTTCAGGGAGAAGCTGCAGACTACCATGTCTGTCATTGTGGATTCAGTAAACAGCAttgtgagcagcagcagcaatgcAGAGTTTCGCTCTGCCTGTTTACACAGCATGAAGGTACAGAACACCATTGATCTGCCTGTAGCCTTGCATCAGAAGCTTCAGAGAGTCATAAGTAGCCGGGTTTTATCCAGCTCCCATTGTACTGCAGGAAAGTCTGTGGAGGCAGCTGTCTCTGAGCAGAATGACAGGGAGAATGTTGAAGAGGACTTTTCTGGTACGAGGTCTGAAAGAGAAGCAGGGGAGTCTCCTGTAATCTCAAAGAGATGGTTTTCATGGACCATGGATGAGGATTTGAAATCATCAGAGAGCAGCTGGGCGGGTATGGACACCCAGATGAACCCTCAGTCCTCTTCACAACAATCACTGACACCTGACATAGACTCCCAAAGCATTACTAACCAGACAAATCAAAAGGTTGAGAGGGAGTGGCTCGTTGAACTTGAAAATCTGTCTGATTGGGATTGAAATTTGAAGTCTATtgtacatttagtacatttctGTTCCCACAAATCTGTTAAATttcattatatagttttttactTATGTTACAAATTTATTAGATGTTCTGCAGAATTGTAATTCCAGagattatattttgtttacaaTCTTGCAGTAAATGACCCAGTTTATTGTATTACTTTCAGTACGTGGTCACCATTCTCTGAAGTAAAGCACCCATCAGCTAGTACCACATGATGGCGCCAAAATATCAGGTCCCTTTTGTCATATTGAGGCAATGTGCTGGAGCCAGCTAGAGTCTGATGAATGGGCTAGAAGCGTCTACATTGCTTTGTGTAGAACAAGCACGTTCACACAGttgaacaataacaaaaaaaaactaagcaaaCCAAAGAACAAGTCACCAACAAATATGCAAATCCAATTGTCAGTGATTGCTGTCAGACAAAAATCTTGTATCTCTGTTTTTGCCATCAGTCACATTTTGCCATAATGTTATTCTAACAGGGTTTCTTTAAATGTTATCAAAACGTAatgataacaaataaaatattctttcTCTGA

Function

GO: NA

KEGG:

id description
K24789 TOP6BL; type 2 DNA topoisomerase 6 subunit B-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286125 lncRNA downstream 16394 39816624 ~ 39819903 (-) True G210800
TU286127 lncRNA downstream 16394 39816624 ~ 39819903 (-) False G210800
TU286132 lncRNA downstream 16394 39816624 ~ 39819903 (-) False G210800
TU286136 lncRNA downstream 16394 39816624 ~ 39819903 (-) False G210800
TU286124 lncRNA downstream 22733 39813339 ~ 39813564 (-) True G210799
TU286239 lncRNA upstream 192988 40035563 ~ 40036100 (-) True G210873
TU286234 lncRNA upstream 212148 40054723 ~ 40055218 (-) True G210868
TU286362 lncRNA upstream 229810 40072385 ~ 40074768 (-) True G210934
TU286374 lncRNA upstream 264029 40106604 ~ 40108923 (-) True G210937
TU286387 lncRNA upstream 295301 40137876 ~ 40138308 (-) True G210949
XM_007234338.3 mRNA downstream 526 39825313 ~ 39835771 (-) False slc30a9
XM_007234337.3 mRNA downstream 527 39825313 ~ 39835770 (-) True slc30a9
XM_022684088.1 mRNA downstream 891 39825313 ~ 39835406 (-) False slc30a9
XM_022684080.1 mRNA downstream 40354 39647423 ~ 39795943 (-) False atp8a1
XM_022684078.1 mRNA downstream 40354 39647423 ~ 39795943 (-) False atp8a1
XM_007234335.3 mRNA upstream 2026 39844601 ~ 39879453 (-) True LOC103025209
XM_007234334.3 mRNA upstream 40109 39882684 ~ 39886837 (-) True LOC103024693
XM_007234332.3 mRNA upstream 46922 39889497 ~ 39907791 (-) True LOC103024376
XM_022684123.1 mRNA upstream 68869 39911444 ~ 39921834 (-) True mlkl
XM_022684135.1 mRNA upstream 80623 39923198 ~ 39926645 (-) True LOC111195796
XR_002651822.1 other downstream 40356 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 214797 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 295481 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 3125554 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 5086091 34709771 ~ 34750206 (-) False LOC103045435
TU286210 other upstream 90563 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 518683 40361258 ~ 40363237 (-) True G210991
TU286454 other upstream 530230 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 720288 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 1464371 41306946 ~ 41310735 (-) True LOC103037199

Expression Profile