RNA id: XM_022684173.1


Basic Information

Item Value
RNA id XM_022684173.1
length 1425
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC111195800
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41601106 ~ 41606198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atACTCTGCTGGAAATAACCTGCGTATTTTATCAAGACCTTCTGCCATGTTCTGCTGCAGAGTGTTTACTGAGAGTGTTTACTGAAGAGTGGAGGGATGGGTGTGGCAGACTACAGGGAACTATAGGATGTGGTTGTAGTCATCTAACATTAATGCTGGACGTAAGAGGCTGGAGCTGACTATAAGGTTACTGCAGCAGTGGGATTATAGAGCAGGACAGCGGTGGTTTGGAGGCTGTACAGAGTCAGTTATGCAGGGTATGAGTTTGTATTGTTCTCACTGTAAGACTTGCTCTTAGCTGGATATGGGTAGTGCAGCCTCAGTGAAAAGCAGTACAGGAGACACCAGCACACTTCACTGGGAGTTTCTTCAGAGCAATAAAGTTAGACCCACAGCCCCCACACTGACTCAAGATGTGATTGGGGTCGACATCCAGGGGAAAGGAACTCTCAGGATCTGCATGTTTGAGGACAGAATCAATATCTGCAAGTACTATGACGCTCGGACAGGCCTGTGGCTCCCGATGCCTCTTAACTGGGAGATGAAAATTGATTTTGTTCGCCACAGAATCCAACAAGTCATAAAAGCTCTCCCAGGCCTGGTGGATCAGAAAGAGATCGCTGCAGCTCTCAGACAGTGTAACTATGACCCTGATGAGGTCATCTCCATCTACCTCACCATATTCGGAGACATCCTCTCTGAGCCACATAAACCAACACACTCTTATCCTGATTCAAACTCATTCAGAACTCATTCTGAAAAGGAGAGGGTCATTGAAGAGCTCCAGAAGAAGCTCCAGTCTAAAGAAAAGGAGGCTGAGGATGTCCTGCAGAAAAACAGCTCTCTGTCTCAGGAGTCTCAGCATTTATCTGATGTGGTGCAGAATCTGACCAGCAGAGTGGTCAAGCTGGAGGCAGATAAGCGTGTTGCCAAGGAGAAGCTTCGATCTCTTCTGAGCCATCCCATTGACCCTAATGCCAAAGCTAACCTCACAGTTTCAGTGAATCCTCAGCACCTTCAGCAGGTCAGAGGTTTAACTCAAGGTCTGAGACTCTCCAGTAAAAAGCTGCGCTCCATGGTGTACGACACACTCGCTGACATGCAGAAGCAGCTACAGCAGTTCAGAGCTGAGACTCAGCTTATGATTCAGAGACACCAACAAGAACACAGAGCTGTGCAGGAGCTTCAAGCCCTCTACCAAGGAAGCCTCCGAGAGGAGGGCACTGCATAACAAGCTTCTGGAGCTGCAGGGGAAGATCCGTGTGTTCTGCCGCTGTGGACGGCAGTCAGACTCAGCAGGATCCACAGGCTGCCTGGAGGTCCCTTTGGACCAGGAGCTACTGCTGCTCCAGAAGGGAGGCAAGAGGAAGTTCATCTTTGACAAAGTATTTTCCTCAAATGCTTCTCAGGCAAGAAAACCCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286977 lncRNA downstream 5141 41593372 ~ 41595965 (-) False LOC103022682
TU286833 lncRNA downstream 381663 41159230 ~ 41219443 (-) False LOC103035761
TU286793 lncRNA downstream 689470 40890814 ~ 40911636 (-) True G211242
TU286654 lncRNA downstream 874922 40718320 ~ 40726184 (-) True G211141
TU286653 lncRNA downstream 882904 40715530 ~ 40718202 (-) True G211140
TU287067 lncRNA upstream 247600 41853798 ~ 41860053 (-) False G211450
TU287065 lncRNA upstream 252665 41858863 ~ 41865986 (-) True G211450
TU287068 lncRNA upstream 252665 41858863 ~ 41860053 (-) False G211450
TU287066 lncRNA upstream 254061 41860259 ~ 41865986 (-) False G211450
TU287064 lncRNA upstream 260562 41866760 ~ 41872555 (-) True G211449
XM_015606784.2 mRNA downstream 483 41593331 ~ 41600623 (-) True LOC103022682
XM_007252879.3 mRNA downstream 22592 41473353 ~ 41578514 (-) False dock4
XM_007252878.3 mRNA downstream 22592 41473353 ~ 41578514 (-) True dock4
XM_022684172.1 mRNA downstream 63365 41473353 ~ 41537741 (-) False dock4
XM_022684174.1 mRNA downstream 129157 41324957 ~ 41471949 (-) True immp2l
XM_007252884.3 mRNA upstream 1879 41608077 ~ 41615191 (-) True tmem168
XM_007252883.3 mRNA upstream 10355 41616553 ~ 41625200 (-) True bmt2
XM_015606777.2 mRNA upstream 21625 41627823 ~ 41633902 (-) True LOC103022995
XM_015606783.2 mRNA upstream 31137 41637335 ~ 41652545 (-) False LOC103043124
XM_015606782.2 mRNA upstream 31137 41637335 ~ 41652544 (-) False LOC103043124
TU286910 other downstream 290371 41306946 ~ 41310735 (-) True LOC103037199
TU286524 other downstream 1037278 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 1222753 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 1237869 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 1661059 39933138 ~ 39940047 (-) True LOC103023530
TU287190 other upstream 598938 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 675931 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 1157003 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 1397207 43003405 ~ 43025465 (-) True G211912
TU287749 other upstream 1482824 43089022 ~ 43106949 (-) False LOC103021577

Expression Profile