RNA id: XM_022684323.1


Basic Information

Item Value
RNA id XM_022684323.1
length 4181
RNA type mRNA
GC content 0.43
exon number 4
gene id fgfrl1
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13536489 ~ 13547597 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGCCGAAAGCGCGGTAAGACGAGCCGGATCCgcgctaagctaatggctaactccagCCGCCAGCAgttccatctctccttctctccaacgTTTGCTCCCTGCCGAACAAGATTGCTACTCTCGTGCTCCAGCAGACATCGCCAgcgcgagttcagagactgctgtgtgttcgttttCACGGAGACGTGGTTAACGGACTCCATCCCGGACTCCGCGATTGAGGTGAGCGGCATGCCTAAGCTACAGCGCGGACCGCGACGCCGGCCTCTCGGGCAAATTATATTAACACACATTAAATTTCCTCTTTCTTCTGTTTTATTCGCTGTAGTGCGGCCCCGGTTCACCCAGCCGGCTAAGATGAGGAAGCGGGTGATAGCTCGACCCGTGGGCAGCTCGGTCCGGCTGAAGTGCACGGCCAGCGGGAACCCCAGGCCCGATATCGTGTGGTTAAAGGACAGCAGGCCCCTCACGCCTGAGGAGGTGGGCGAAGGCCGCAAGAAGAAGTGGACCCTCAGCCTGAAGAACCTCACCCCGGAGCACAGCGGCAAATACACCTGCCACGTGTCCAACCGCGCCGGCGAGATCAACGCCACCTACAAAGTGGAAGTCATCCAGCGCACAAACTCCAAGCCCATCCTGACAGGTACCCATCCTGTAAACACCACAGTAGACTACGGTGGCACCACGTCCTTCCAGTGCAAAGTACGCAGTGATGTCAAGCCCGTTATACAGTGGCTCAAGAGGGTAGAGCCTGGAGACGAGAGCAAGTTCAACTCCACCATCGAGGTAGGAGACCACCACTTTGTGGTGCTGCCCACTGGAGAGGTGTGGTCTCGGCCAGACGGCTCCTACCTGAACAAGCTGCTGATCACCCGAGCCAAAGAGGAAGATGCTGGAATGTACATCTGCCTGGGGGCTAACACTATGGGCTACAGCTTCCGCAGTGCCTTTCTGACTGTGCTGCCAGACAACAAACCTTACTTCTCCCCGATCCCTGCCGTCTCATCCCCCGGCCTCCCCTGGCCTGTGATCATCGGCATCCCAGCTGGAGTGGTCTTCATTCTGGGCACCATCCTGCTGTGGTTCTGCCAGTCTAAGAAACACTGTTCCTCAGGAGCTATGGTCTCAGCTCAGGCTCTTCCCAACGGCCACCGGCAGCCTCAGAGAGAGCGACCGCTGCAGGGAGTCGACAAGGACTGCATGGCCTCCATGACCTACGAGGAGTACCtgacccagcagcagcagcaacagcagctccTCCTGGCCCAGAGCGGCCCTAAAGTCTACCCAAAGATCTTTACagacatccacacacacacccactcgcACGTGGACGGCAAAGTTCATCAGCACCAACACATCCACTACCAATGTTAGCCTCAGCCCTGATGGCCAGTCTGCTTTCTTTTGGTTCTATCCCGCCAGTCGTAGCTTCTCTTTTTCCACAGAACACAGTTTGGATCTGCAGAACAGTCGAACTTTGAGCCAAATTTTGTGGGCTTGGACCAAGCTGCACCACTGTCACACAACTCTACATCCAGTCTAAAGGACTACAGGACTAAACAACGACTAAACAAAGACATTTCATCCAAGCTGCTTCACACTAAACTAGAGTCTGACTGACCAGAGTCTCTAAAGTCTTCCATACTGGATGATCCATCAGGTGGAAATGATCAGCCAAGATGAGGCAAAAACATGGAATACACATGAACACGACgaaatcacattaataaaaaaacgtgCATGGACTTAAATCAAGAAAATGCAAGTTTCAAACAGACTTCAAACTTCCAAAAGACTGAGCAACACAGCAAAACAAAAGGAGGTGATTAATATTTGGACGATCCACATATGCACACAAATGCATCAATGAATAAAGTGAATGAATGTACTGTCTCTTCTTCTCACCAGGCATTGTGAGCATCAAGCTTTGCCATCTTTTTAGTCACGCCAACATCCACCTCTTCATTCAGTCAGCTTAAATGCTCACTATGTTTGTGGATGGGGCCAAAAAGGATCCATTTTTATCAGCACCAAATTTCAGTGAAGTGTATTTGTATCACTGGATGCTATTCAGAACGTTTGCAGGTATACAGAATTTTTCACTGACTGTAGATACACCCAAACCAGATTCCCTCAGACAccggtaagtcttttaaagctAGATGATTGCATGAGGATCTATATGTACATGTTGTTCTTGCAGACATCATTCATTTCaagcatttgttttattttattttcagactgcttgaatatacagtatcaaTGGGACTGTCATCTTCGGTACACAAGCTGTCATATCATTTCATTTTGATTGCAAAACTAgcaatatatttaagtatatctctTCTCTTCCACTTgattggaaagaaaaaaatcagaagtGCCTGTTGTCCATAGAGTGATGTCTCTACATGGATATGTATGGATATTATATTTTGTTGGTGATGttttataaagttcagaaaaagGAGAACTCTGAATGTTCTGAGGTACAACTGTCACAGATTCCTGCTTTTGCTCAGGTGGCCCttttctttatatacataaatataaagaatatatatatatttaatcttatgcaaaatttgggcacccatggtggttgtttttgttattttttcttttttcattacttaaaatataaaacaaacagaacGTCTGTATTTAATCAGACATAAAGCACAGCaatttcttttgtcttttatatcataaaaaaaaatccaaataatgAACCTGCGCTGTACAAATATTTGGGCACCCCAAATGctgcaaaaatgtatttctttttatttcatttttataggAATAATCAATACTTAGGCATGTCAgctattagaattagaattctGTATTGTTTCTACAGtatggaatataattaagaaatTACAGTTCAGAGGAACTATTGAGGTCAATATGAAATTAGAAAGACCAAGTAACCTTTCAGATAAATGCTCAttgaataaactcttttttttacaaaaaacccAATATATAATGTGACAAAAAGGAAAGTTTAGCTGAGCCAAGAGCGGTGCACTGTTGTAGAAACCTAATGTTTGAAGTATACTAAAGTACCCAACAACCAGAGAAGTCAGGTGAGTTTGGAAACAGGTGGTGCTGCTGAAATAGAAACTCTTTGGCCTCAATCAGAGTAAAGCTACACTTGGAGACAAAATGAACCTGCATTTGgtgccaactgtgaagcatgggggtggatgttTCATGCTTTGAGGTTGTGCTGATCCGACGCATTCTCAAGCTGTGATTTCTGCCAAACGGGGGTGCCCAAACTCTTGCACAGCTGTTGTAAAAAATAGAGAAACTTTGCTTTAAAATCATTGGTTgaaaatcttgttttttatgtttgattagTTAGTAGCTGCAGACGCTGTCTAATTATCTACTAATTATCAATTAAAGAGTCAACAACAAAATGTGTCATTTGGccaagggtgcccaaacttttgcattagactgtttctttttttttttttttgcctatggacgtattattattattattcttattattatcatgaccaCTATATGGAGACTGTATAAAATGCCTTTGACTGCTTAAGCAACAGCAGGCCTTTTAATTTAGTTAGATTAATTTTTAATCTAGATCTTCATAATTAGACTGAAACGAGTGTGAAAATGATCCCAGCTCAGATTTTACCCTGTGTTTACCCCAACGCTCACAATAATGGGTGAGTGCTGAACAGACTGCAGAGCTTAGCATCCATAGGAATGCACTTAGCCCACATATTTCTTTTCGGTGGTGAGAACTCTGAGGACGCCGGTCCGTGTTGTTTTAGTAAGTAGCCCGAAGTGGAAATCTTGTACGTGTAGTTAATTTATTGGCtagcagtgtgttttttttttcttaaattggGCATTACATCCATGTTGTGaaccaaaaaaagacaaaatcagttaatgttttgtttttcttttcatttgtaGCTGCAATGTAAGCTATGTAGCATATAtcatgtgtaaaatatttatatttgctgtttaaaaaaatacagaaagttAGTAATTAGTTATCTTTGTATGGACAATCTTGTACAGTCTGGCCTCTTTTTATGTGtaagaaatgtttatttgttgtcacgttgaaacatttaaaatcattttatcgTTGCcaataaaatgatgaaaaactt

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0048794 swim bladder development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0051216 cartilage development biological_process
GO:0048565 digestive tract development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0021670 lateral ventricle development biological_process
GO:0021678 third ventricle development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651757.1 lncRNA downstream 214368 13320312 ~ 13322121 (-) True LOC111195723
TU278166 lncRNA downstream 214390 13320346 ~ 13322099 (-) False LOC111195723
XR_002651764.1 lncRNA downstream 237715 13287852 ~ 13298774 (-) True LOC111195727
XR_002651753.1 lncRNA downstream 503361 13024274 ~ 13033128 (-) False LOC111195722
TU278573 lncRNA upstream 33647 13581244 ~ 13683903 (-) True G205327
TU278578 lncRNA upstream 47598 13595195 ~ 13598025 (-) True G205332
TU278592 lncRNA upstream 87127 13634724 ~ 13650827 (-) True G205343
TU278595 lncRNA upstream 90977 13638574 ~ 13641585 (-) False G205345
TU278599 lncRNA upstream 90977 13638574 ~ 13641585 (-) False G205345
XM_022683595.1 mRNA downstream 98316 13382812 ~ 13438173 (-) True LOC103037758
XM_022683600.1 mRNA downstream 180129 13350437 ~ 13356360 (-) True LOC111195721
XM_022683607.1 mRNA downstream 189084 13341821 ~ 13347405 (-) True LOC103034080
XM_022683608.1 mRNA downstream 189097 13341821 ~ 13347392 (-) False LOC103034080
XM_022683604.1 mRNA downstream 227166 13304416 ~ 13309323 (-) True LOC103037424
XM_022683619.1 mRNA upstream 179068 13726665 ~ 13733660 (-) True LOC103037875
XM_022683621.1 mRNA upstream 203816 13751413 ~ 13764223 (-) False atoh8
XM_022683622.1 mRNA upstream 203816 13751413 ~ 13763402 (-) True atoh8
XM_007236477.3 mRNA upstream 217919 13765516 ~ 13767091 (-) True LOC103037229
XM_022683623.1 mRNA upstream 226739 13774336 ~ 13777596 (-) True LOC111195730
TU277652 other downstream 1952415 11583200 ~ 11584074 (-) True G204671
TU277526 other downstream 2891802 10644254 ~ 10644687 (-) True G204584
TU276738 other downstream 5887603 7624083 ~ 7648886 (-) False LOC107197584
TU276577 other downstream 6932011 6603676 ~ 6604478 (-) False jph3
trnai-uau_43 other downstream 7003960 6532437 ~ 6532529 (-) True trnai-uau_43
TU278618 other upstream 186116 13733713 ~ 13739921 (-) True LOC111195729
TU278646 other upstream 225720 13773317 ~ 13777621 (-) True G205375
TU278710 other upstream 427080 13974677 ~ 13978450 (-) True LOC103035169
TU278963 other upstream 1996320 15543917 ~ 15545622 (-) True G205640
TU278995 other upstream 2284053 15831650 ~ 15832094 (-) True G205670

Expression Profile