RNA id: XM_022684343.1


Basic Information

Item Value
RNA id XM_022684343.1
length 2079
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC111195836
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26244248 ~ 26246421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcccgtttatggtatggtttcccCGCTCATTGTTTCTCTGGTATTGACCTGGCTTGTTTTGACTACCCCTGCtgaatcttttaataaaagatttTTATCGTATCTGCACAAGTCTCCTccttgtctggccctgacattgtcatttggcgacacttagaggcgatgcattgaaattacaactaagATTTCCTTTACGCACAGATTGTAATAAgtcattattgggtaaaataaagtgaattaatcagacaattaaacagtaattaaccagacaatttcattggcttactgAAATAATCATTCAACGTGTTTCTGcttagcctagattatataaacatgcatgAAATGTTGCgttggagttgttggagatggcagcgttggcattattggaaGATATTACTAATGGCCGAATTCGTCGAGAGCgcattttccgtgaccattatgattttttggcccatgatgatgactggcttatgAGCCGTTTCAGATTTCCAAGAGCTATCCTCTTGGAACTCTGTGCTGAGTTGGGTCCCGTTTTGGAGAGAGAAACGGCGAGGAGTCGTGCATTGCCAGTTCCTTTACAGATACTGACAACGCTTGGCTTCCTGGCAACTGGCTCGTTCCAAAGAGAACTGGCAGACCGGTCGGGGATGTCCCAGTCATCTTTGAGCCGTGCCATGCCAGCTGTTTTGGATGGGATCATCTGCATGTCAGCTAGGTATATAAGGTTCCCATATGATGTGGTTGACCAGGCAAACATCAAAGCGCAATTTGCAGCGATAGCCGGTTTTCCTAACGTAATCGGAGCGATCGACTGCACACACATTGCTATAAAGGCACCATCTGAGGAAGAATTTTCTTATGTGAATAGAAAGCACTTTCATTCCATAAACGTGCAAATTATCTGTGATGCAAAAATGTGCCTTACTAATGTAGTGGCACGGTGGCCTGGATCAACACATGATTCGTACATCCTAACAAACAGCATGGTTGGGATAAGATTACAAGCTGGCAGAGTGCGTGATGGgtggcttcttgGAGACAGCGGCTACGCGCTCAAGACGTGGCTGATGACCCCCCTTTGCAATCCGCAGACTGACCGGGAGCGGAGATATAAACTGGCGTGGACTGTGTGCCAATGGATGCTGTAGAAATACATAAAAGAATTAAATACATCTCATTAACCCAAACAAGCTATGTCTGTCTTTCTTATAAATAGTAGGGGGTAAATTGCCATAATCAACCAACGTAGCCTACTAACGGGCAGCtattaaaaaaggaataaaataaaaaaaggcaaatagTGTACTTGGAAAATTGCTCAAAGAACTTGAACTCTTACCTTCaccggtatccagggtaacatcAGTGTCTCCCTCACCTGCTGACACCACGCCAGAGAGGGCCACGTCGCCCACAACAGCCACCACCCTTTGCTCAAATGGTGTGAGCTCCTCCACCCCCGGTCCGCTCCCCATCCTCGCAACACTTTCTCGATGGGCAGAAGACCGTTTCTTAACGCCCGACTTAACATCATACCATTTCTATTTAGTTCAGCTACTGTGCGGTGTTCAGAGCCCACTGCATTGACGGCCTGCGCCACACTTTCCCATTCAATCCTTTTACGTTTACTGTTTATGCCGGAGGACAGAGaaccaaataaaatgttttttttttggcctctACCTCTGACTGTAAAACCTCCAGTTCACAATCGGTAACATTCCTTTTCTTTGCCATTTTCGAAATGAGTATTCCAAAGCCTGTTTTCTCTCATTAGCCTATTATACTCTGCTTAATTGAGGGAGGAGACATGACAGGTGTGATGCGCTCGTGCACGtgcgcttgatttcaagttgattgtgatgtactaagagaaaatACGTGGAATTCTGCCTACGTTTGataaatccagatttttttgtgcgtacggaacttttcaggtctgagcgtacggaacattttagtaggaagtccacgcaagtcttagtacatgaggccccaggtcTGCTTTGTCCAGTGTTACGGATGACAGGGATAGACGTTAatgcagaatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282388 lncRNA downstream 28519 26215453 ~ 26215729 (-) True G208048
TU282387 lncRNA downstream 29138 26214899 ~ 26215110 (-) True G208047
TU282381 lncRNA downstream 74442 26163915 ~ 26169806 (-) True G208042
TU282369 lncRNA downstream 87202 26127107 ~ 26157046 (-) True G208030
TU282365 lncRNA downstream 88980 26134586 ~ 26155268 (-) True G208029
TU282411 lncRNA upstream 34026 26280447 ~ 26281036 (-) True G208070
TU282696 lncRNA upstream 115665 26362086 ~ 26362363 (-) True G208307
TU282718 lncRNA upstream 171300 26417721 ~ 26418448 (-) True G208329
TU282738 lncRNA upstream 224802 26471223 ~ 26471582 (-) True G208344
TU282752 lncRNA upstream 262829 26509250 ~ 26514290 (-) True G208356
XM_022684342.1 mRNA downstream 138344 26103487 ~ 26105904 (-) False LOC111195835
XM_022684340.1 mRNA downstream 144421 26096805 ~ 26099827 (-) True LOC111195834
XM_022684393.1 mRNA downstream 149057 26092170 ~ 26095191 (-) True LOC111195867
XM_022683899.1 mRNA downstream 155833 26086651 ~ 26088415 (-) True LOC111195761
XM_022683900.1 mRNA downstream 158607 26083164 ~ 26085641 (-) False LOC111195762
XM_022683916.1 mRNA upstream 367441 26613862 ~ 26640223 (-) True LOC103031232
XM_022684351.1 mRNA upstream 427185 26673606 ~ 26715253 (-) True cep290
XM_022683919.1 mRNA upstream 546341 26792762 ~ 26815459 (-) True kitlg
XM_022684352.1 mRNA upstream 699873 26946294 ~ 26949370 (-) True LOC111195856
XM_022684353.1 mRNA upstream 705268 26951689 ~ 26953473 (-) True LOC111195857
TU282385 other downstream 31407 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 31479 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 251754 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 306216 25919220 ~ 25938032 (-) True LOC111195756
TU282224 other downstream 535938 25648624 ~ 25708310 (-) False G207940
TU282801 other upstream 409022 26655443 ~ 26656184 (-) True G208394
XR_002651797.1 other upstream 899615 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 2012883 28259304 ~ 28268342 (-) False wwp2
TU283796 other upstream 3777540 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 3916036 30162457 ~ 30162907 (-) False G209127

Expression Profile