RNA id: XM_022684356.1


Basic Information

Item Value
RNA id XM_022684356.1
length 4492
RNA type mRNA
GC content 0.54
exon number 36
gene id nup160
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28310866 ~ 28367957 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCAAAAAGTTTTAAGGAGCAGCTGTGTGAGCAAATGCGAAACTACCCGCATCAGTACGACCTGTCCTCATCACAGCACAGTGACAAATATGCTATGCAAAATAGCTGCCGGCAGGCGGCACCATCCAGCAGCGCGCGCATAGTTTTCAAATTGCGCCATATCCGGTTTGAAGGCGCGGGTGAGATGGCGGCGCTGGAGCGGAGCTATACGGAGATTCAGGGCTTCCAGAGGGAGAGGGAGGCTTCATTCCGTACTATCAACGTTACTGTCGGTATAAGTGCGCCCCCTGGCGGAGTGAAGCTGCCGGACAGCGCTGGCGGGTTCTCCTATGAGGAAAGCGGGACGCTGCTGTCCATCACCAGCAACAGGTTCATCTACTGGTCTACGTCTGGAGACACAGTCCAGCTGGTGGAACAGTCTCTGGACACTAACCTCCTGAATAATGCGATCAGACTGAAGTTCCTGCACTGCTCAGTTCTACCCAGAGGAGTCCATATACACGAAACCCTCAACAATGTCATCATCCTCATTGTCACCAACCTGTCTGTGCACAGGCTGGTTTTGCCACACCCCACACGCATGTACCACAGCgaGCTGGTCACAGAGCTGCAGATGCAGTCTGTGTTTACAGATGTGGGGAAGCTGAGTGTTCAGGATGAGTCTCACAGTTTCATTCTTCCCCAGAGCCCCACAGCATCTGCTGCTTGGATTAGCCCGAATGGACATGCACACTTCGCCCTCTCCCCACCCACTGGGGGCATCACTGTGGTTACCTTACCACCCCATGACCAGCAGGGGTCTGCTTCTTTGCTAGAGCTGAAGCAGAGTTCAGTAATGCAAAGATTAGCTGGCTGGATGCCTTCAGCAATCAGGGGGGAGCAGAGTCCGTGTGACTTGGCGGTTAGCCTGGCTGCCTCGTCTCTGGAGGACGACACTTTTATCTTCGCTCTGTGTCAAGATCATAAACTGCGAGTGTGGTCATTCAAGgagcagcagtgtgtgctggtGACGGATCTGCTGGACTATGTGCCTGTGGGCCGCAATGAGTTGCGGTTTGTTCCTGGTCAGGCCCACCGGCTGCGTGTGTGTTTCTCTGGCTCTACAGGACTGTGTGTCTCCGTCTACCTTGCCATACCCAATCGGGGCCAATTCTGTGTGCTGCAGCTGGTGGCTAGTGAAAACAGCCGCTACAGCCTGGAGCACATCTCTACCAGCTTCAGTACACAGGAGACGCTGGTGGACTTTATGTTGACTGCCACTGACATTTGGGGTCTCTGGGTGGATGACGATAATCAGGCCGTGGTGAAGTACATTAACTTTGAGCAtaatgCAGGGGGTCTGTGGAACCAGGTGTTTGTCCAGCCGCCTCCAGAGGAGGAAGTCAATATCGGTCCAGAGCAGGACCCCAGGGAGACGTACTTGGATGTGCTGTTTTCTCCACTGCGCTTCACAGCTGAGGCCATTGTGAAAGCTCTGCAGATTTATAAACGTGGTACAGATCGGTTCGTAGACGTGACGTGGAACGAGCTGAAGATGGAGGTCACACTGGCAGTGGAAAATGAGctacAGAGCAGTGTGACGGAGTTCGAGTTCTCTCAGGAGGATTACCGGATGCTGCAAATGGAGTTTTGGAGTAAGTTTTACGCCTGCTGCCTGCAGTACCAGGAGGCACTGTCCACCCCTCTCGCCCTGCACATCAACCAAGCCACCTCCATGGTCTGCCTGCTCAAGAAGggttTTGTTTCGTTCCTGCTGCCCTGTTTTGCTGTGGATCACCTGTACCTATCTGCTGATGAGTATCTGACATCGGAGGAGGAAACACCTGTGGCTGAAGGAGaCCCTGATCTGGGCAGTGATATCCTGAAGCTGGTGCAGTGTCTGCGGATGGTGAGTGACTGTGTTCAGGGTGAGATGGCGTTCGAGATGGAGAAGgcgctggagctgctgctgtctcCAGAGAGAGCTGCAGAACAGGTGCTGGAGAGCCTGCTCGCCAACGACAGTGATAATGTGATTGAGGACATTACCAATAAATTGCAGAATGTGGGCAATCCCCTGGCTGCCATGGCTGCTCTGCTCAGAGAGCTGGATCTGGAGACTGATGTGGAGATGGGGCCAGAGCCAACAGCTCCCCCTGCAGGTCAGTCTCTGAGTGTGCGGATCAGTCTCTCCCAGCTCTATGGCAGCAGTGTAGCGGTCAGTGTGATTTGCCAGGCAGTGTGTCAGATGGCGCTGACCAGGGCACTGCTGTGCAGAGACCTGCTCATCCTCCAGCACCTCTACCTCCGTCTTGGAGACAATATGCTCCTTGCAGGCAGTGCCCAGTCTCTACAACTGCAACAAGATCTGATCCCCCGCTGCTCTCACCTGCTCTGTTGTTATTACCTGCTGAAGCAGCTCAGCCAAACACTTGCCTCACCTGTGCCAGTCGATACACTAGATGCTAACCTGCAGCACCTTTCTGTGTTGGAGCTTTCGGACTCAGCAGCGCTGGCGCCCAACAGATCAGtgttgaATCCTCAGACGGTGGTGGAGCTGTTTTATCAGAATGTGGGCCGTAAGGTCATCATCTCTCAGCTGTTTGGTCAGAGTGATGCTCGTGCAGCACAGAGTCCGCTGCACTggcctcagctcagctccagtgTGCTCACAGTCCTGGGACAGCTGCTTTGGCCCAGTAACCCCAACTTCATGTTCCCAGAGTGCATGATGGGAAATTGTCAGTACACACAGCTGCAGGAGTATGTGCGTCTGATTCGTCCGTGGTGTCAGGCGAATGTAGGCTCCTGCCGGTTTATCCTGGGTCAGGCGTATCTGGCGAGTGGAGAGGGGCAGAAGgcattgcagtgttttcaggAGGCGGCCCCAGAAGTGGAGAAGGAGGAGTTTTTGATGAAACTGACTGGATCAGAGGAGGAGGCGGGATCTACAGCACCGCGCTTACTTTATTACAACAAGGTTCTTCGACTGCTGGAAGATGTTGGTTTGCCGGAGCTGGTGATTCAGTTGGCTACGTTGGCCATATCAGAGGCGGTGAATGATGAGAGAAGTCAGGCTGCTCTGTGGACACGGATTTTTAAGCACCATCTGGACCTTGGGCACAACAAAGAGGCCTATGAAGCCCTGACACAGAACCCGGACTCCAGCAGGCAGTTGGACTGTCTGCGACAGCTGGTGGTGGTTCTGTGTGAACGCGCTCAGCTTCAGGATCTTGTCCAGTTTCCCTACGTCAACCTGCATGAAGAGGTGGTCAGTATTATTGAGTCTCGTGCTCGGGCAGTGGACCTGATGACCCATAATTACTATGAGCTTCTGTACGCCTTCCACATCAACCGCCACAACTACAGGAAAGctgGTACAGTGATGTTTGAGTATGGTATGCGTTTGGGACGTGAGGTGCGGACACTACGAGGTTTGCAGAAGCAGGTGAATTGTTTCCTCGCCGCTCTGAACTGCCTCCGCCTCATTCGTCCAGAATACGCCTGGATAGTCCAGCCCTCATCCGGACCTGCTTCTGATCGACCTGGAGCTTCACCCAAGCGGACTCATGACGGAGAGCTGGCAGCAGCTCCAGTGAACCGGCAGATAGAGATTCTGGAGCTGATTGATCTGGAGAAAGAGTACATCCTCTCTCGCTGCCGCCTCACTCTCGCCCAGCAACATCCTCCGTCAGCCGCTATAGCAGGCAGTGCCTCAGCAGTGGAGATGGTGGCTCTTCTGGTCCAGGCTGGTCTCTTCGACACAGCGCTCTCTCTGTGCCAGACGTTCAAACTGCCCCTCACTGCTGTCTTTGAGGGTCTGACCTTTAAGTGTGTAAAGCTGCAGTATGGAGGGGAGCAGAGTCAAAACGAAGCGTGGAACTGGTTAGCAGCCAATCAGCTCCCAAGTCTCATCACCACTAAAGAATGCAGCGCTACAGACGAAGCCTGGAGACTGTTAGCTTCATACCTGGAAAAGCATCAATCCCAGAATGCTCAGTACCATCGCTGTGTCATCAATAGGCTGCTGTCACACGGGGTGCCCGTACCTGACTGGCTGGTTAATGCTTataagGAGGTGGACGCTGCAGCTCTTCTGCGTCTGTATCTGAACTACGATCAGCTGGAGCCTGCAGCGGAGCTGGTTCTGGAATATGTGGATGCTCTGCTGGGAAAGGGACACCAGTATTTTGGAATAGAGatgCCACTCTCTGCTACAGCTCCGCTGGTCTGGTTGCCGTACACCTCGATCGACCAGCTGCTCCACAGTCTGAGGGACAGCCAGGCCAACAGCAAGGTTTATGAGAAGCTGAATGTGAAGCTCACAGATTACCACAGACTGGTGGAACAGAGCACTCAACACCGCCTGCAGGCCCACTGAACATACCCTGTCTCAGCACAGTGCTTCACCTCTGTAGATCCACACCTCCTCGCTGGACTTCATTTTTCTATTAATAAGCAGTTTTGTTAACTATTttatatgcaataaaatgtGGTTGTATTAAGAGCAA

Function

GO: NA

KEGG:

id description
K14303 NUP160, NUP120; nuclear pore complex protein Nup160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283205 lncRNA downstream 18655 28290609 ~ 28292211 (-) True G208649
TU283203 lncRNA downstream 23969 28286532 ~ 28286897 (-) True G208647
TU283194 lncRNA downstream 100907 28209395 ~ 28209959 (-) True G208640
TU283037 lncRNA downstream 175524 28135141 ~ 28135342 (-) True G208551
TU283028 lncRNA downstream 1045907 27264576 ~ 27264959 (-) True G208542
TU283222 lncRNA upstream 5134 28373091 ~ 28381368 (-) True G208665
TU283242 lncRNA upstream 50678 28418635 ~ 28421081 (-) True G208683
TU283271 lncRNA upstream 93571 28461528 ~ 28463518 (-) True G208702
XR_002651860.1 lncRNA upstream 123394 28491351 ~ 28492233 (-) True LOC111195846
TU283255 lncRNA upstream 123431 28491388 ~ 28492083 (-) False LOC111195846
XM_022684355.1 mRNA downstream 42497 28216395 ~ 28268369 (-) True wwp2
XM_022683925.1 mRNA downstream 117801 28177140 ~ 28193065 (-) True adat1
XM_022683924.1 mRNA downstream 147513 28156767 ~ 28163353 (-) True tmem231
XM_022684354.1 mRNA downstream 1077276 27026494 ~ 27233590 (-) True LOC103031696
XM_022683917.1 mRNA downstream 1199828 27108299 ~ 27111038 (-) True LOC111195765
XM_007241086.2 mRNA upstream 104564 28472521 ~ 28476854 (-) True rpl27a
XM_007241085.3 mRNA upstream 115534 28483491 ~ 28489434 (-) True psma1
XM_022683940.1 mRNA upstream 234933 28602890 ~ 28622098 (-) True LOC103040620
XM_015603785.2 mRNA upstream 294226 28662183 ~ 28663924 (-) True LOC107197304
XM_022683945.1 mRNA upstream 300773 28668730 ~ 28683502 (-) False LOC103041235
TU283202 other downstream 42524 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 1158566 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 1654682 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 2098025 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 2098097 26212058 ~ 26212769 (-) True G208046
TU283796 other upstream 1656004 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 1794500 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 1794500 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 1833648 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 2730887 31098844 ~ 31099861 (-) True G209224

Expression Profile