RNA id: XM_022684361.1


Basic Information

Item Value
RNA id XM_022684361.1
length 2180
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC103023888
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 30061148 ~ 30110040 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctccagacGTGCAGCACATAAAGAGGAGGGACATCGTGCTGAAGCGGGAGCTGGGCGAGGGGGCCTTCGGGAAAGTATTCCTGGCAGAGTGTTATAACCTCAGCCCCACCAAGGACAAAATGCTGGTGGCTGTCAAGACTCTGAAGGACCCCACCCTGGCAGCCAGGAAGGACTTCCAGAGAGAGGCGGAGCTCCTGACCAACCTGCAGCACGAACACATCGTCAAGTTCTACGGCGTGTGTGTGGACGGTGACCCCCTGATCATGGTGTTCGAGTACATGAAGCACGGAGACCTCAACAAGTTCCTCAGAGCTCACGGTCCTGATGCTATGATCCTGGTTGACGGACAGCCACTGCAGACCAATGGGGAGCTGGGCCTGTCCCAGATGTTGCACATAGCCACTCAGATCGCCGCAGGGATGGTGTACCTGGCATCCCAGCACTTCGTACACAGAGACCTGGCAACCCGTAACTGCCTCGTGGGTAACGGCCTACTGGTCAAGATCGGAGACTTCGGAATGTCCAGAGACATCTACAGCACTGACTACTACCGGgtTGGAGGTCACACGATGTTGCCCATTCGCTGGATGCCACCGGAGAGCATCATGTACAGGAAGTTCACCACAGAGAGCGACGTATGGAGCTTCGGAGTCATCCTCTGGGAAATCTTCACTTATGGCAAGCAGCCGTGGTTCCAGCTGGCCAATAATGAGgtaaTCGAGTGTATAACTCAAGGTCGTGTGCTGGAGAGGCCGAGGCTGTGTCCTAAGGAGGTGTATGACATCATGCTGGGCTGCTGGCAGAGAGAACCTCAGCAGAGGCTCAACATCAAAGACATCCAGAAAATTCTCTTTGCCTTGGGAAAAGCCACACCGGTCTACCTGGACATCCTGGGCTAGAGCGGGTCCGAGCCGGCCCGGCAGTCAGACGGACGGACGCACGtacggacggacggacagacggacggacagacggacggacggacggacgcgTAAACCCAGGAATAACCCAAACGACGCGTACCTTACACACCACTGTCAGACACCGGCGGAGTGGGGACGGACTTAAGTGCCTGCTACACCTTTCCAAATACTGGATAAGAGTCTTTGAAAAgcacttttacattttgtttaccTGCATATACACTTGTACAGTTCTGCTGGATGAAGACGAGAAGTCTCTTGAGgagtttatttcttcttttttttttttggagatttttttcaTAGCATTCTTCTAAAAttcacaaaacaacaaaaaaaaaaaatctaaaaaaacaacCGGAAAAGGATAAAAAAGGAATATTTTGTTCCCTTTCAGTTTCCTGACAGCATCACAGAAGATTATAAACATCTCCCGTGCTTaccctcttctttttttcccattttataactatatataaatatataatatatttttatttatttagcttttttctgCGGATGTCTGCCATGTTTCTTGCTGAGGGTACATCACCTTTTTGAGATAACTGCTTACCGTTGCCAACCCGCAGAAGAAAAAAAGCCTTACTGCGTTTGGGGTTGGCTCCAACTCCCCTCTGACCGCAGAGGAGCGTCCAACAGGGCTTTTAATTCCTATTTAAAGGAGCTTTTTAGCCAATCGAGGAACTTTATGGAACGACGGAAACACCAATCAAGAATCCAAGCAAAggaaaagtttatttaaacaacgaaaaaaatgaatgtatataatgtaaattTCTGTGTCACAAACTACAGTATGGTAACTTATTTCATTTTCCTCTTTAGATGATTTTAGTTCCTTGGCGTGATGTTACAGTGAGTGGATTCTATAAATATTttgataatattttaatgttttttatttttccacacACTCATTGCAATgtatgttgttttattgatttcaaTCCTTTCCATCTCATTCTttactttctttacttttacttttgtctTCTTTTAGGGATTTGTGATAAAACAGTGACTTTAAGAGGACTTTGAAATGAAGGTAGAAAAGCAGTTAGATCGAGTTTCATAGCAGAACAATCGCACTTCTCCAAAAGATGCCATAGTTCCCCTGAAAAATGCTTCAGATGTCATAATCGCTCGTTTCATGTTATAGATCCTTTATACACATTCGTGAAATTTATTCGGACgtcaataaattaaattaaataaatgtataactgACATGTTTA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007417 central nervous system development biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283795 lncRNA downstream 38427 30022099 ~ 30022721 (-) True G209089
TU283760 lncRNA downstream 76844 29522085 ~ 29984304 (-) True G209058
TU283787 lncRNA downstream 175974 29883646 ~ 29885174 (-) True G209082
TU283770 lncRNA downstream 347910 29709123 ~ 29713238 (-) True G209067
XR_002651801.1 lncRNA downstream 413573 29646866 ~ 29647575 (-) True LOC111195775
TU283810 lncRNA upstream 18138 30128178 ~ 30128661 (-) True G209104
TU283828 lncRNA upstream 45034 30155074 ~ 30156513 (-) True G209121
TU283831 lncRNA upstream 49837 30159877 ~ 30160330 (-) True G209124
XR_002651856.1 lncRNA upstream 213522 30323562 ~ 30327730 (-) True LOC111195840
TU283895 lncRNA upstream 327278 30437318 ~ 30437788 (-) False G209166
XM_022683978.1 mRNA downstream 589268 29434479 ~ 29471880 (-) False LOC103042757
XM_022683977.1 mRNA downstream 589268 29434479 ~ 29471880 (-) True LOC103042757
XM_022683975.1 mRNA downstream 903580 29043975 ~ 29157568 (-) False LOC103039163
XM_022683974.1 mRNA downstream 930875 29043975 ~ 29130273 (-) False LOC103039163
XM_022683973.1 mRNA downstream 930875 29043975 ~ 29130273 (-) True LOC103039163
XM_022683985.1 mRNA upstream 58061 30168101 ~ 30195378 (-) False LOC103038627
XM_022683981.1 mRNA upstream 58061 30168101 ~ 30195378 (-) True LOC103038627
XM_022683984.1 mRNA upstream 60214 30170254 ~ 30195378 (-) False LOC103038627
XM_022683982.1 mRNA upstream 60214 30170254 ~ 30195378 (-) False LOC103038627
XM_022683983.1 mRNA upstream 60214 30170254 ~ 30195378 (-) False LOC103038627
TU283796 other downstream 36598 30023961 ~ 30024550 (-) True G209090
TU283202 other downstream 1792806 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 2908848 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 3404964 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 3848307 26212058 ~ 26212841 (-) False G208046
TU283834 other upstream 52417 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 52417 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 91565 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 988804 31098844 ~ 31099861 (-) True G209224
TU283995 other upstream 1163828 31273868 ~ 31274402 (-) True G209256

Expression Profile