RNA id: XM_022684368.1


Basic Information

Item Value
RNA id XM_022684368.1
length 8335
RNA type mRNA
GC content 0.44
exon number 50
gene id LOC103023908
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 38079387 ~ 38109064 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaatgaattaatttattatttatttatttttacagttttccagTGTTCCATTTCTGCTCTTGACAATCAGAATtgcagaaagaaaagaaatcttTACTATATTATCAGATCTTTTTAAATTTTGTGTCTTGTACCAAATGTAGTTTGCATTATACCATGAGATTTCTTTTTACAAGATGAAACAATTATTTAATGTCACACATCCAAAAGGCTTAGTGTCTTTAGTAACTGCTTTAGATTAAATAATGCTTCACACACTCCTTTTGCATATGTAACTCAATAAATATCGCCCATGTGAGTCTAaagtttttcatcattttttgtcTCGTTAATCTTTATCTTCCTTACGAATAGTGTTGCAGGTAAGCACTTCCTTCTGTGTGATGATCTGTGTGACGATGATCTCATAAAACGATCAGGATGTTTGATGCGTATTAAGGaaacacataaaatattttaattaagtgattatttacttttattaattgAAGTACTTCACTTTGGATGATCatcttatattacattattatgctCATACCACTCAACCACCACTACCCAATCCAACTGGATGAGAAACAACGAACTTCACATTATACAGTGTGTAAGTATGCTAATCCAGGCTAGATTTGATGCAGGATTGGCTTGGATATATGCTTCTGTCTTGCTGATTTTTGAAGGTAAGCCCTATTCAGCTGACCCCTACTTGGACAACAAGAGGGACCTTGACTGCATACATATGTATGAATTTCTCCTTATCTGCAACCTTTATTGACAGGTGGATGACAGTCTGCTACTCATCTTCCTTGACCAGCTGCACCAGCCTTTGATCATCTTCATCTGACAGTTTTATcatcataagaaaaaaaatcttagtccCGCTAGCATGTCTCAACGTTACTCCTACAGAAACTCTCCGGGTGATTATCAATCACATGAAGATGCATTTTCCGATTCGTACCAGAGAGACTCGGCCGTTTACAGGGCGAGAGATAGATCAAGATCTCAGGAATCGGTGCATCCTACAGCATCTTCCAGCGGAGCTGCGGACTCTACTGTTCTTGTTCCAGGAAaggctctttcttttcttcataGCTGTGGACTGGACGCAAGTGACCTCTCAATGCTTGCAGATCTTCCTGAGCATCTCATCACCGTCGAGACACTCCCTCAACTACTTTTACAGATAAAAGAACGAAAATCATCCGACACTTCCTCATCTAGGGCCAGCGCAACACAACCTGTCATCGATACATCATCTCATGCCGTGGCGAGTAGCAGCTATGGAGACGTCATTGAGTATCCAGTGGATCAATCTACACATTCAACTTTTCCTCTCCCACCAGAGCAAGTTCAATGCTGGCAAGACCGCTGGGGGAACCCTCGAAAAACTGGGTTTGTGGCGAGCACTAGTGCTACTGCCACATCCACCAGCCATCAAGTGACCAATGTTCGCGATTATGGCCACTCCAGTGAAGGAACCCTTTATTATGATGAACAGCCTTACTCCTCTGCAACCTCACAGACATCGTCAACTGCTTCACACTCTTATGATGAGTACAGCAGTGGAAACACGCAAAATTATGAGCCTTTGCATCATGTTTCATCAGACACTGTTTTTAAAGTGCCTACTTGGAGGGAGGCATCAGCCTTCAATGGCGTACTTCCTACAAGATTTCCTTACACGTGCGTTCTGTGCAAAATTACTGTCCATACTGAAAAGgactgGTCTGCGCACATTAAAGGTTCCCAGCATGCCAACAGTCAGCGCCGACTTGTTAAACGGTTTCCAAAGTGGAATCGCAACAATGACTCGGCGACAAGgaTTGAGTCAGTACATCAGCCCAGATCCAAAGAAGGTAAGAAGgactgGTCTGCGCACATTAAAGGTTCCCAGCATGCCAACAGTCAGCGCCGACTTGTTAAACGGTTTCCAAAGTGGAATCGCAACAATGACTCGGCGACAAGgaTTGAGTCAGTACATCAGCCCAGATCCAAAGAAGATCCAGGTTATAATGTGCCTACGAGGAAGGAGGCATCAGACTTCTATGGCAGAAATCCCCCAATATATCCTTACCCATGTGTTCTGTGTAATGTTACTGCTGCTTCGGAAATGGAGTGGAGAGTGCATGTTAAGAGTGTTTCACATGCTAGCGGTCAGCTCAAGCTTTTGAAAAAATACCCAAGCTGGGATCAGAGTTTTGAATCTTCTAGAAGGAATGATGTTCCGGTAACAACTGTGACAACAGTGACAACAGAGACCACACCGGTCAAACCCATTGTGAAAAGAGACCCTGTTCATAAGGTACCAACCCTTAAGGAGGCATCAAACTTCCGTGGCAGAGCTCCTTCAGTTTTTCCTTCCACATGTGTTCTTTGTGACTTTACTGTCCTTTCTAAAAAGGAATGGGGAGTGCATGCTCGAAGTGCTCAGCATGCTAACAGTCAGCTGGAGCTTGTGGAAAgGTATCCAGAGTGGGATCAGAAGATTGTCTCTGCCAGGAGGAATGAGAGCAAGGTGCCAGCAGACCAAACCACAGAGAAAAAAGAAAAGccaaaaaagaagcaaaagaagGAGGACAAGTCAAAACCATCAGTTACCTGTCATGGGAAAGTGGTCACCGTTAAATTTGGAGCCAGTAAAGTGGAAGAAAGTTACTTGACAAAATTGCTTGGCCAGTTTGGAAAAATTGTGAAAGTCATGATGTTCCCAACACTGGCTTTGGTGGAAATGGGATCAAAGGAACAGTCAGATGATATAGTGAAATATTTCACTGATAATCCTTTAGCAGTTCAAGAAAAACCAGTGGAATTTTCTGTCTCTACAGCTTTCAGTGTACTTCAGAATAACCGAGTTGTGTGCTTCGCCCCTTTACCTGCTGGAGACGGTATCAGTTCCGAGTTGTTGGCCACTGCCAAACGTTTTGGATCTGTAAAAAACTCCTCGTTCCTGCCAAGCCGGGGGTATGTGGAAATGATCAGTGTATCCGAAGCACAGAAGTTGGTTGACCATTATAACGGCAGGCCACTTAAATTAAAAGGAACCGCAATTCACGTCACCTTGTCCTCTGAATATGAAACACTTGACTCATTAATCGATGATGCCCAGTCACAGTCTAGCCCAAGAAGACGCAGTAGACATAGGGACAGTCCTAGCCCTAAGAGAAGACGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAGAGAAGGCGCTCTTCAGAGAAGACCCGCTCTTCAGAGAAGACCCGCTCTTCAGAGAAGACCCGCTCTTCTAGGAGATCCCGATCAAAAGAGCGAGATAGACCGCGAAAATCCACAGACAGCACAAAAACCTCTTCAAAGAAGTCATCAGTTTCCTCAGGTTCTTCTGCTAAAGATGAATCCAAAAAGTCAAGTGAGGATACTAAAGCCAAGATAACTGCCAGCACTGATGACACTGCATCCGTACAATCAGACAGTGATGTTGAAGGGCTAGAAGTTATTGCAGATGATGGAGAAGAACTGCAGCATGATGATCATGAGCCCACAGATGACGAGAAGATGGACCAAGACCAGAAAACTGGAGAAGCTGCTCACCTAAATAATAAGCCATCCAGTACCCCAGTAAAAGTGAAGGATTCAACCAGTCACAGCCAGAAGTCTGACATTTCAGCTACATCAGGTAGTACTAAAAAGGATCAAGCTGCAGGTCAAGCATGTGAAGCCCTTGAAGAAGAGGAGGAGGATCCTGACTTCCCGTACAACCTTGATAACTGCATCACTTTAGATGAACTTGAGGAGGAAGCATTATCAGATGGTGAACAGAATTCTTCAGTGAAGAAGAACCCAGagGGAACACCAGAGGAAATTACCAAAACTGTAAATAGCCCAACTTATCCCACCTTGTCTCACTCTGAGGATAGCAAACAACCAGAATCACCGGAAGACAGAAATATTAGCAAAACAGGTGCTGAAATCAAGAGCACAGAAGTCATAGAAACTGTAAATCTGCCAAGCCCTACTTCCTTAATGGACTCTGAGGACAGCAAACAACCAGAATCTCAAGAAGACAAAAGCATCTGCACTACGGCTGCTGAGATCAAAAACTCAGTGGTAACTGAAACTGTAATTTGTACAACTGCTGCTTCCTTGACGGAGTCTGAGGATAGCAAACCAGAAATACAACCAGTATCACCAGAAGACAAAATTACCAGCAGTACAACTGATGAGACCAAGAGTTTAGAGGATGCATCAGTTAAAGATACAGCTGATGAGATTGTAGAGCAACacgaagaagaaaaagacaCTGATGATATAAAGAAAACCTTTGGGAAAGTACTTTACATCAGAAATCTTCCAAAGTCTGAGGACTACACAGATTCAGATTTTATTAATGTTGCAAAAAGATACGGAGCAGTAAAGCACTACTATTTAATTCGCAATGGTAACAAGGGATTTGTTGAGATGATGCATTCCTCTGATGCCGAAAGAATTGCAGCTGATGCAAACAATCAAGATGTTGCATTCCGTGGTAACGTCTTGAAGATTAAAGTGTCTGAAAAGTACAGCACTTTGCCAGCAACAGGGTTTAATGTTGACAATGTTGattctgaggaggaggaggatgatggcAGTGGAACAGCAAACTCTAAGGAGTCCACTGATGAGAACCAGGGTGTTACAGAAGCAGAAGCTTTAACTGaaccaaacaaaccaaatgAGCCAGTGGGAACTGAGTTTATCCGTCCTGTAGTTGGCTACTTCTGCAACCTGTGCAATGTCATCTATGCCAGTGAAGAGGAGGCAAAAGATGATCACTGTAGGAGCTCATTACATCATGAGAAAGTGAAGGAGCACAAGAAGAACAGTGCCATGTCCCAGAAGCTGACGCCTGATGGTGGTCAGAAAGGCTTTGCTGTTGGCCGTGGGCTCTTGGCTGCCGCAGaaactttaaattataacatggTTGAATCCAATCCCGATCCCTACAGCTCCACTTCTCAACACATTGGTGGAATGGTGGGCTTGGGAGGAGGGGACAGACAGGACCATGGCTCTCAGCTCCCCAGCAGAGTGGGAAGCCACCTTAGCAATACCATGAAACTGTTTGCCAGTCTTGGTCTCTCACCTGCCGACTTGGATGCATTGGCACAGATTCCAGAGGAAAACATCAGTGTGGAGACACTTCCCCATCTCATCATGCAGCTTAAAAATCGGAAAAATCTATCTGGTGAACTGCCGTCACTATCCTCAGAAACTTCCTATAGAGAAGGCCGTGATGACTGGGGGGACATGCAGGGAGGACGTCTGGACCGATCCTCGGCCCACAGTCAGAGCCGTACTTCCCAGGGCAGTTTTGGATATAGTTCCATGCAAGACCTCTCTACTCGTGGAAATGATATGCATGAAtatggtggtagtagtagtagcagcagcatcGCCAGAGACTGCCAGTATTCTGATCTTTCCACTGACCACTATCATGGTCTTGGCATGGGTTCGTCTTCAAGATCTGACGACCTCTTTATGCAGCGAAGGATGGGAGCTCCCTCTCAGGGCAAAATCCAGGATTTCTTGGGAGTCATGCCACAAATGTTTCCTCATGTGTGTGCCCTTTGTGACTTTGATGTGCATTCCACCATGgAATGGAATCAACACACAAATGGAATGCGGCATGCCGAAAACAGGAAACTCCTCCTGCAGTTGTACCCGGATTGGGATCCACATATGTCATCCGAACGAATGTGCGGGTCCTTCTCCTTTGACTCAAAGGGCTGGTCTGAGGGGTTACTTGGGGCTGGTCCGTCTAGTGGTGCGAGACAGAGAACGGGAATGAATTCTAACTGGGGATTGGATTCTGGTATGGGTATGCCAAGCAAAATGCAGTCGTTTCCTATGACACCAAAGGTAAGAAGCAGAGTGGTAGTGGTCAAATATAATCGGAAGCCAATGTTGTCCAACCTGTTTGCTCTGGCCCATCCATTTGGAACCATCCGTGAACATCTTGTACTCATGAACAAGGCTTTTCTTGAGTTTAAAACACATGAGGAGGCTCTGGCAATGGATAATTATTATCGGAAAAAGCCAGCCACTTTACATGGGAATGAAGTGCATATCTACATATCCAAGGAACTGTTGGTGATTGAGAAAGATGACCGAGCAGAccgagacagagacagagacaataaaaatgtaaagacaGGGACCAGTCCTGTGGTGTTCCTTTCTAATTTGCCAAGGGACAGTGAGAAGAAAATGGAGTTACTCACAATAGCTGGTCGATTTGGCACTgttgaaaaacatattttcttaaATGATGAGGCATTTGTACAGATGAGCAGTGCAGATGATGCAGATATGTTGGTGAGGTACTACACTGTCAATCCATTAAAAATTGCTGGGAGAAACATCCGTCTGAATATCTGCGCAAAGTACAAGAGTTTAAGAGTTCCACCTTGGAAGGCTGACCAAGAAAGACAGAATCGAGATGAGGGAAGCCGGAAGAGCAGTAGCAAAGCAAGTCACAAAACCTCGTCCAGCTCTCCGAAGACCACAAGATCCAAATCTAAGGATCGCTCAGCTGAAACCGAAGCAGATCAAAACCCCACAGAGGAGCACAAAGACACAGATGACCAGGATGATGTGGAGCAGGCTGAGGCTGATCATGAGAATGCTCCAGAGAATTTGAGTGAACTGgaAGGACTTGGAGAATCTGACTTCCCTGATAATATGGATGAGTTTGTGACTCTGGATGAGCTAGCAGAGGAGGAAGATGCTGAAATGCACGAGTCTAAATCCAGGGATAAAAGCTCCTCAGggAGATCAAAGCAGAGCCGTGAACTAAAAGTCGTCAATGTGGTTGGATTTAGGCGTGGCTATAATTATCTTGATGAGATTCTGTCTTTGGCCAAGCCTTTTGGGAAAGTGGTGCGACATCTGATCCTGAATGTGAGGCCTGAGgcCTTTCTTGAGCTTGCTAGTGAACAGGAAGCCAGAGCAATGGTTCGTTTCTACAATGGAAATGTTACACCATCTGTGTGTGGAAAAGCAGTGAAAATCTATCATTCTCATGTCTACCCAACCATCCAGATTGGCAAAGTAATTTATGTTGGACACATTCCGGCCTTTAAAACATCAGATGCATCCCTACTGAAAATTGCAGAGCCGTTTGGCAAAATCAAACGCTACGTTTTAATAAGGGGACGTGGCGAGTGTTTAATTGAGATGGAGAGGATTGAGGATGCAGAGAGATTTGTTGAGGCGGCCAAAGAAAATCCACCAACGTTTCAAGGCAAACCACTAGTTGTCAATATTAGCAGGAAATACACACAACTCAAACATGGAGGCAGACCTCCAGCCCCAGAAACAGAAGACAAACGACCATCCAAGAGAGATCGCTCTGACGAAGAAACAGCAGCCGAGGTCAGCAAAACTAACAGCAGTAAGGAAGAAGAGCCACCAACCAAGAAGGTCAAAGAGGGAACATCCTGTACAGATAATGTGGAGGGTGTACCAGCAGAGGAGAAGCAGCAGGAAAATGAAAATCAAGCTGAAACTAGCGAGAGTGAAGCTGAAACGAAAATAAAGAACACAGAGGAAAATAGCAGTGATGCAGCTGAAGCTCAGAACATGGAGAGCACATCGCAGAATGACGATTCTGATGCTACTGTTGTGCCTTCCGGTGTACCTTCTAAGAATGAGGAAAACAGTGAAGGTCTTACTGTTCCTGTGCAGTCTGTGAAAAAAACTACCCTAGACAGTCTGGGGCCATATGAACCTGATGTCCCAGTGGGTGCAGAGTTTGTGAAGATGGGATATTATTGCAGAGTCTGCTTCCTTTTTTACTCAAATGAAGACACCGCTAAGAAGGTCCACTGCAGCAGCCAAGCACACTACAACAAACTTAAGaaacacttgGAAAAGGAGAAGGCAAAAGCACAAAGAGAAAATATGACCAGAGAGTAACACTGGGAAGAACTGAAGCTATAGGAGATGATGTCCTTGGTACTATACAGTATTTGATAGTGCATGAGCTGTTAGTGCAGTATACTgatataatgtatattatacTGGTATAATGTATTTTCAGTAAGCTGATTCATTTGCcatattttttcccccttttttttatcttactaGATCCTAGAACACATTCATCTGCTGTTACTTTCTGTCTTGCCATATTAAAAGTATTCCTTCAACTATTTGCTGGTTGTGACTGATTCAGCACTACAGACATACAATAAAACTTTCATTATGGTCTGTCCCTTAAA

Function

GO: NA

KEGG:

id description
K13213 MATR3; matrin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285598 lncRNA downstream 44918 38025424 ~ 38034469 (-) True G210445
TU285500 lncRNA downstream 222014 37857038 ~ 37857373 (-) True G210372
TU285493 lncRNA downstream 253567 37825219 ~ 37825820 (-) True G210365
TU285470 lncRNA downstream 395885 37677456 ~ 37683502 (-) True G210347
TU285455 lncRNA downstream 432518 37646192 ~ 37646869 (-) True G210339
TU285601 lncRNA upstream 13431 38122495 ~ 38124887 (-) True G210448
TU285607 lncRNA upstream 109211 38218275 ~ 38218728 (-) True G210453
TU285612 lncRNA upstream 162561 38271625 ~ 38271862 (-) True G210457
TU285638 lncRNA upstream 240895 38349959 ~ 38372198 (-) True G210477
TU285671 lncRNA upstream 411099 38520163 ~ 38520494 (-) True G210506
XM_022684058.1 mRNA downstream 176 38076129 ~ 38079211 (-) True LOC103022549
XM_022684055.1 mRNA downstream 3919 38050238 ~ 38075468 (-) True LOC103024433
XM_007246428.3 mRNA downstream 30905 38044021 ~ 38048482 (-) True thoc3
XM_007246434.3 mRNA downstream 302671 37694053 ~ 37776716 (-) False glra1
XM_007246433.3 mRNA downstream 302671 37694053 ~ 37776716 (-) True glra1
XM_022684057.1 mRNA upstream 2981 38112045 ~ 38128787 (-) False LOC103036455
XM_022684056.1 mRNA upstream 2981 38112045 ~ 38128786 (-) True LOC103036455
XM_015605093.2 mRNA upstream 23828 38132892 ~ 38134329 (-) True LOC103038351
XM_022684062.1 mRNA upstream 38759 38147823 ~ 38256668 (-) False htr4
XM_022684059.1 mRNA upstream 38759 38147823 ~ 38256667 (-) True htr4
TU285068 other downstream 1368644 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 3329181 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 3442088 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 3447069 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 3804794 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 1418569 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 1504654 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 1537290 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 1824074 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 2252194 40361258 ~ 40363237 (-) True G210991

Expression Profile