RNA id: XR_002651764.1


Basic Information

Item Value
RNA id XR_002651764.1
length 2020
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC111195727
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13287852 ~ 13298774 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATCGTTTATGTGATCGACAAGGAGCCTTTGCAATGAATGaagctgtttttgtgtgtcAGTTGAAAATATAGGCAATGTACGACGATGGAAAATCTAATTATTTCTTTGCAAAACCTAATtaggcattaaaaaaaaggttaacgCCAGCGCCTGAAACcgtttttgtttaataatcccATTACTGACGGCTCATCATGTATAAAATGGCGCAGAAGGACACAAACTTTCCACTTGTTAAAGTGATTCTCCTAGAAAAAGGCGAGGCCAGCTCTACTGTAGCCCATTTCTTAGGATATGAACGCGATAGGAGACGGAATAAGATACATGGAAACGCTAGCTGAGCCTGTCTGTGCTGCGAGTGGATGATTGATGATGAAGAGGGCCAAGGCCgagcgcgcgcacacacacacacggctgaATGGAGCCGGGCCTACATGCGAGTGTATTGAAGCCAGCAGCCCAGGGGAAGGTGCTCTGTTGTCCCCTAATCCGGTTAGCCGTCGAGCCACCAGCCATCTGAGGCACCGGCAGTAGAGGACGAAGAAGGAATGGGTGGACGTGGAAAGGAAAGATGCGACGAGACTAGAGGAAAGGAGAGGAGAGCAAAATGGATGGGGGTTTTGGATGGGGAAAAAAACTTGCTTAACCCCtgctgagagagacagaataagaAAACAATaactgaaagaaagacagaaagaaagagagagagagagagaacgaggagACATTTTGTTTCACAGGGGTAGTGTTTCATGTTCAGATTTCAGttctcttaaataaaaaaataagatgaagCTCCTCCTGAAGAGTAAAGAGACATACACACTGAAATTGTTGGAATGAGGTAAACGCCAAAAATGATGAACTGAACTGTAGGTTGCTCTACCACGAGATACAatcaaaaacaatatatatattttgatctATCAAAATTGTAAAGTGAGCAACAAGCTGTGACCAgtaaaaagacacaaaaaaatctgtttttggaaAGTATTCTCTGAGTAGCTCAATATTCATGCTTTATCCCTCTTTCAGAGCTGTTGTTGTAAGTACTATAATCAAAGGCCCTTGAGAAACTGCATAGAGAATTTCTTTCTGCAGAGCCTTATGCAGTAATTACAAAAGAGGCATACTTTAGAGACTTTCTAGAGACTTTCTGTAGGCtaattatgtaatataatataattagataattatataacaataataatgctaatgcatTGAACTGACTatataagattatttttttaaccaaagaGTCTTAAGACCTTTAAAAGTATTTCACAGTTgcacatatttataatttttttttatgagattGTCCAATCCAGTCCACAATGAATCTACTTTTTCCAGTCTTCAGCTTTGTAGTTCTGCAAATCTTTCAGTGTGAAATTCCCAGCACTGTGTGAGAACGTGTGTTTGTCAATGGCCGGCCAAAGGGGCTCCATACGTGGCCTCCACACAATGCCATCTGCTCTCTGCCTCCATGCACCTCATGCAGTACAGACACAGCATAAGTCAAAAGCGCAATTAGTAGGGCCATCATCTCCCACCAGGGCTGCCAAGGGCCTTGACAAGGTTTCCTGCAGCCCAGCATTTGTTCCTGACCTGGGGAGAGAGCAGGAGCTGGAGATGCCTTGCTCAGCAGGCACATTCTCAGCAGTCTTTTTCACATTCTCCCCCCTTTTCTTATTAGCTCTGGTGGACAGTTCAAAGATTTGAGAGGCCACCTGTTGAGGCGATCATAGCACATCCTTTTTCAAAAATCATGTGTGCATGTTTAATTGCGCTTGCTGGTGTCATTTTGATGCATTTGTTATGTAATTGCATGTGCCAATCATGCATGAATGCAGATtgcagatatatatatttatatactgcaCATCTTTGCCATTGTGCAGTAATAACAGGTTAATATGTGAACAATTCCTCATTTAACTTTTGTGTGTGATTAGACAGACTGTTTGTGAATACCTTTGTTATGAGGTACAATAAAATCATTAACAAGTT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0030900 forebrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651755.1 lncRNA downstream 254724 13024274 ~ 13033128 (-) False LOC111195722
XR_002651753.1 lncRNA downstream 254724 13024274 ~ 13033128 (-) False LOC111195722
XR_002651756.1 lncRNA downstream 254724 13024274 ~ 13033128 (-) False LOC111195722
XR_002651754.1 lncRNA downstream 254724 13024274 ~ 13033128 (-) False LOC111195722
TU278060 lncRNA downstream 254739 13024268 ~ 13033113 (-) False LOC111195722
XR_002651757.1 lncRNA upstream 21538 13320312 ~ 13322121 (-) True LOC111195723
TU278166 lncRNA upstream 21572 13320346 ~ 13322099 (-) False LOC111195723
TU278573 lncRNA upstream 282470 13581244 ~ 13683903 (-) True G205327
TU278578 lncRNA upstream 296421 13595195 ~ 13598025 (-) True G205332
TU278592 lncRNA upstream 335950 13634724 ~ 13650827 (-) True G205343
XM_007234029.3 mRNA downstream 25356 13259303 ~ 13262496 (-) True phox2b
XM_022683612.1 mRNA downstream 386456 12893678 ~ 12901396 (-) True LOC103033266
XM_007234173.3 mRNA downstream 759273 12522775 ~ 12528579 (-) True sqstm1
XM_022683576.1 mRNA downstream 825099 12446726 ~ 12462753 (-) True ptcd3
XM_007234178.3 mRNA downstream 871916 12408735 ~ 12415936 (-) True mxd3
XM_022683604.1 mRNA upstream 5642 13304416 ~ 13309323 (-) True LOC103037424
XM_022683607.1 mRNA upstream 43047 13341821 ~ 13347405 (-) True LOC103034080
XM_022683608.1 mRNA upstream 43047 13341821 ~ 13347392 (-) False LOC103034080
XM_022683600.1 mRNA upstream 51663 13350437 ~ 13356360 (-) True LOC111195721
XM_022683595.1 mRNA upstream 84038 13382812 ~ 13438173 (-) True LOC103037758
TU277652 other downstream 1703778 11583200 ~ 11584074 (-) True G204671
TU277526 other downstream 2643165 10644254 ~ 10644687 (-) True G204584
TU276738 other downstream 5638966 7624083 ~ 7648886 (-) False LOC107197584
TU276577 other downstream 6683374 6603676 ~ 6604478 (-) False jph3
trnai-uau_43 other downstream 6755323 6532437 ~ 6532529 (-) True trnai-uau_43
TU278618 other upstream 434939 13733713 ~ 13739921 (-) True LOC111195729
TU278646 other upstream 474543 13773317 ~ 13777621 (-) True G205375
TU278710 other upstream 675903 13974677 ~ 13978450 (-) True LOC103035169
TU278963 other upstream 2245143 15543917 ~ 15545622 (-) True G205640
TU278995 other upstream 2532876 15831650 ~ 15832094 (-) True G205670

Expression Profile