RNA id: XR_002651802.1


Basic Information

Item Value
RNA id XR_002651802.1
length 447
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id LOC111195778
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 32703448 ~ 32704069 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGTTAGGTTGAGTATTTGAGGTAATTGTGGTGTCACAATGATTGTGAAGGTTTGAAGCAAGGAACAGATGGATCAAGCAGTTTAAGTACATCTTTTTAAATTTAGATTACCCTATTAATCGGTTCAGTTCTTACTcattatctatataatattttatatataactttTGAATATTTGATGCTAATTGAAATCTCTAGAATTGTGACTTGCTCTATatttgtctttgttttagcATTGCAACTTGGAAAGTAAAGAGATTGTGTATTGTAATTCCTTTGGAGAGTCAAAGGAGAAATGTGAAACCATCAGAGACACCTGGGAACTGTTTGCAAAGAGGAGAGATATTCTTGGTCCATGGACAGTCAAAACCTTACCACATTCAACACAGCTGGATTCCGTGTCATGTGGAGTTTTCACCATAATGTTTGCAGAATGTGTTCTTGAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651803.1 lncRNA downstream 1978 32700061 ~ 32701470 (-) True LOC111195779
TU284193 lncRNA downstream 63546 32638824 ~ 32639902 (-) False gar1
TU284081 lncRNA downstream 957454 31745585 ~ 31745994 (-) True G209329
TU284056 lncRNA downstream 1184172 31519032 ~ 31519276 (-) True G209304
TU284053 lncRNA downstream 1187251 31515959 ~ 31516197 (-) True G209301
TU284183 lncRNA upstream 101230 32805299 ~ 32807680 (-) False G209406
TU284181 lncRNA upstream 102726 32806795 ~ 32807680 (-) True G209406
TU284230 lncRNA upstream 124793 32828862 ~ 32829063 (-) True G209433
TU284237 lncRNA upstream 181621 32885690 ~ 32886052 (-) True G209440
TU284249 lncRNA upstream 248958 32953027 ~ 32953517 (-) True G209452
XM_007245533.3 mRNA downstream 63519 32629294 ~ 32639929 (-) True gar1
XM_022684003.1 mRNA downstream 76872 32614920 ~ 32626576 (-) False LOC111195776
XM_022684004.1 mRNA downstream 77349 32614920 ~ 32626099 (-) True LOC111195776
XM_007245534.2 mRNA downstream 93540 32602209 ~ 32609908 (-) True LOC103043395
XM_007245535.3 mRNA downstream 102437 32592697 ~ 32601011 (-) True LOC103043705
XM_022684011.1 mRNA upstream 1096033 33800102 ~ 33812322 (-) False grhpr
XM_022684009.1 mRNA upstream 1096033 33800102 ~ 33810499 (-) True grhpr
XM_022684363.1 mRNA upstream 1136918 33840987 ~ 33844951 (-) True mrpl18
XM_022684346.1 mRNA upstream 1149000 33853069 ~ 33854406 (-) True LOC111195843
XM_007245527.3 mRNA upstream 1205040 33909109 ~ 34001611 (-) True pdgfc
TU284055 other downstream 1185556 31517433 ~ 31517892 (-) True G209303
TU283995 other downstream 1429046 31273868 ~ 31274402 (-) True G209256
TU283958 other downstream 1603587 31098844 ~ 31099861 (-) True G209224
TU283818 other downstream 2496798 30201605 ~ 30206650 (-) False LOC103038932
TU283837 other downstream 2540475 30162457 ~ 30162973 (-) True G209127
TU284258 other upstream 251546 32955615 ~ 32956085 (-) True G209458
TU284339 other upstream 898030 33602099 ~ 33604989 (-) True G209529
TU284514 other upstream 1466698 34170767 ~ 34212849 (-) True G209640
TU284515 other upstream 1466698 34170767 ~ 34212849 (-) False G209640
TU284540 other upstream 1530849 34234918 ~ 34274593 (-) True G209660

Expression Profile